RNA–Protein interactions for RNA: ENST00000471752.1

USP48-207, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 445 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-207ENST00000471752 MED9Q9NWA0 146 aa5.16□□□□□ -1.58
USP48-207ENST00000471752 CRPP02741 224 aa5.15□□□□□ -1.59
USP48-207ENST00000471752 GNG4P50150 75 aa5.15□□□□□ -1.59
USP48-207ENST00000471752 REG3AQ06141 175 aa5.15□□□□□ -1.59
USP48-207ENST00000471752 MIAQ16674 131 aa5.15□□□□□ -1.59
USP48-207ENST00000471752 KCNIP4Q6PIL6 250 aa5.15□□□□□ -1.59
USP48-207ENST00000471752 GTSF1Q8WW33 167 aa5.15□□□□□ -1.59
USP48-207ENST00000471752 AP1S3Q96PC3 154 aa5.15□□□□□ -1.59
USP48-207ENST00000471752 TRBV25-1A0A075B6N4 114 aa5.14□□□□□ -1.59
USP48-207ENST00000471752 IGHV1-24A0A0C4DH33 117 aa5.14□□□□□ -1.59
USP48-207ENST00000471752 IFNA1P01562 189 aa5.14□□□□□ -1.59
USP48-207ENST00000471752 P01737 135 aa5.14□□□□□ -1.59
USP48-207ENST00000471752 SMIM17P0DL12 118 aa5.14□□□□□ -1.59
USP48-207ENST00000471752 MT1HL1P0DM35 61 aa5.14□□□□□ -1.59
USP48-207ENST00000471752 MEF2BQ02080 365 aaPredicted RBP5.14□□□□□ -1.59
USP48-207ENST00000471752 RASL11AQ6T310 242 aa5.14□□□□□ -1.59
USP48-207ENST00000471752 Q6ZNX1 250 aa5.14□□□□□ -1.59
USP48-207ENST00000471752 C9orf62Q8N4C0 152 aa5.14□□□□□ -1.59
USP48-207ENST00000471752 MANBALQ9NQG1 85 aa5.14□□□□□ -1.59
USP48-207ENST00000471752 IGKV2D-29A0A075B6S2 120 aaPredicted RBP5.13□□□□□ -1.59
USP48-207ENST00000471752 IGKV3OR2-268A0A0C4DH90 116 aa5.13□□□□□ -1.59
USP48-207ENST00000471752 hDV102S1A0JD36 115 aa5.13□□□□□ -1.59
USP48-207ENST00000471752 IGKV2-29A2NJV5 120 aaPredicted RBP5.13□□□□□ -1.59
USP48-207ENST00000471752 BCL2P10415 239 aa5.13□□□□□ -1.59
USP48-207ENST00000471752 RPL37AP61513 92 aaKnown RBP5.13□□□□□ -1.59
USP48-207ENST00000471752 C15orf56Q8N910 161 aa5.13□□□□□ -1.59
USP48-207ENST00000471752 NIT2Q9NQR4 276 aa5.13□□□□□ -1.59
USP48-207ENST00000471752 KRTAP4-8A0A0G2JLE6 195 aa5.12□□□□□ -1.59
USP48-207ENST00000471752 FAM231BA6NCW3 169 aa5.12□□□□□ -1.59
USP48-207ENST00000471752 GAGE12HA6NDE8 117 aa5.12□□□□□ -1.59
USP48-207ENST00000471752 RPS20P60866 119 aaKnown RBP5.12□□□□□ -1.59
USP48-207ENST00000471752 CACNG7P62955 275 aa5.12□□□□□ -1.59
USP48-207ENST00000471752 TWIST1Q15672 202 aa5.12□□□□□ -1.59
USP48-207ENST00000471752 HIGD2BQ4VC39 106 aa5.12□□□□□ -1.59
USP48-207ENST00000471752 DGAT2L7PQ6IED9 249 aa5.12□□□□□ -1.59
USP48-207ENST00000471752 LINC00526Q96FQ7 95 aa5.12□□□□□ -1.59
USP48-207ENST00000471752 TMEM243Q9BU79 118 aa5.12□□□□□ -1.59
USP48-207ENST00000471752 DPH3P1Q9H4G8 78 aa5.12□□□□□ -1.59
USP48-207ENST00000471752 A0A087WYN8 130 aa5.11□□□□□ -1.59
USP48-207ENST00000471752 A0A1B0GUV1 79 aa5.11□□□□□ -1.59
USP48-207ENST00000471752 CTRLP40313 264 aa5.11□□□□□ -1.59
USP48-207ENST00000471752 CNBPP62633 177 aaKnown RBP5.11□□□□□ -1.59
USP48-207ENST00000471752 EIF5AP63241 154 aaKnown RBP5.11□□□□□ -1.59
USP48-207ENST00000471752 CIRBPQ14011 172 aaKnown RBP5.11□□□□□ -1.59
USP48-207ENST00000471752 C14orf177Q52M58 125 aa5.11□□□□□ -1.59
USP48-207ENST00000471752 ALKAL2Q6UX46 152 aa5.11□□□□□ -1.59
USP48-207ENST00000471752 TCTE3Q8IZS6 198 aa5.11□□□□□ -1.59
USP48-207ENST00000471752 PRSS3P2Q8NHM4 247 aa5.11□□□□□ -1.59
USP48-207ENST00000471752 PGLYRP4Q96LB8 373 aa5.11□□□□□ -1.59
USP48-207ENST00000471752 hCG_2014768A0A024R1R8 64 aa5.1□□□□□ -1.59
USP48-207ENST00000471752 F2Z2F3 143 aa5.1□□□□□ -1.59
USP48-207ENST00000471752 PDE6DO43924 150 aa5.1□□□□□ -1.59
USP48-207ENST00000471752 OXTP01178 125 aa5.1□□□□□ -1.59
USP48-207ENST00000471752 AMTP48728 403 aa5.1□□□□□ -1.59
USP48-207ENST00000471752 COX6A2Q02221 97 aa5.1□□□□□ -1.59
USP48-207ENST00000471752 TMEM97Q5BJF2 176 aa5.1□□□□□ -1.59
USP48-207ENST00000471752 SLC51BQ86UW2 128 aa5.1□□□□□ -1.59
USP48-207ENST00000471752 CNFNQ9BYD5 112 aa5.1□□□□□ -1.59
USP48-207ENST00000471752 RPP21Q9H633 154 aaKnown RBP5.1□□□□□ -1.59
USP48-207ENST00000471752 SMKR1H3BMG3 65 aa5.09□□□□□ -1.59
USP48-207ENST00000471752 H7C1H1 209 aa5.09□□□□□ -1.59
USP48-207ENST00000471752 RPS10P46783 165 aaKnown RBP5.09□□□□□ -1.59
USP48-207ENST00000471752 CEBPGP53567 150 aa5.09□□□□□ -1.59
USP48-207ENST00000471752 COTL1Q14019 142 aa5.09□□□□□ -1.59
USP48-207ENST00000471752 WDR73Q6P4I2 378 aa5.09□□□□□ -1.59
USP48-207ENST00000471752 CHCHD10Q8WYQ3 142 aaPredicted RBP5.09□□□□□ -1.59
USP48-207ENST00000471752 DPH3Q96FX2 82 aa5.09□□□□□ -1.59
USP48-207ENST00000471752 RNF185Q96GF1 192 aa5.09□□□□□ -1.59
USP48-207ENST00000471752 TRAV8-4A0A0B4J246 113 aa5.08□□□□□ -1.6
USP48-207ENST00000471752 A0A1B0GVG6 124 aa5.08□□□□□ -1.6
USP48-207ENST00000471752 SDHAF1A6NFY7 115 aa5.08□□□□□ -1.6
USP48-207ENST00000471752 TEX46H3BTG2 121 aa5.08□□□□□ -1.6
USP48-207ENST00000471752 GATCO43716 136 aaKnown RBP5.08□□□□□ -1.6
USP48-207ENST00000471752 TSHBP01222 138 aa5.08□□□□□ -1.6
USP48-207ENST00000471752 TRGC1P0CF51 173 aa5.08□□□□□ -1.6
USP48-207ENST00000471752 FGF6P10767 208 aa5.08□□□□□ -1.6
USP48-207ENST00000471752 FOXI1Q12951 378 aa5.08□□□□□ -1.6
USP48-207ENST00000471752 SREK1IP1Q8N9Q2 155 aaPredicted RBP5.08□□□□□ -1.6
USP48-207ENST00000471752 CLRN3Q8NCR9 226 aa5.08□□□□□ -1.6
USP48-207ENST00000471752 LYPD6BQ8NI32 183 aa5.08□□□□□ -1.6
USP48-207ENST00000471752 SPACA4Q8TDM5 124 aa5.08□□□□□ -1.6
USP48-207ENST00000471752 LPAP08519 4548 aa5.08□□□□□ -1.6
USP48-207ENST00000471752 IGHV3-64A0A075B6Q5 118 aa5.07□□□□□ -1.6
USP48-207ENST00000471752 IGKV2-24A0A0C4DH68 120 aa5.07□□□□□ -1.6
USP48-207ENST00000471752 C9JQL5 133 aa5.07□□□□□ -1.6
USP48-207ENST00000471752 PHOX2AO14813 284 aa5.07□□□□□ -1.6
USP48-207ENST00000471752 UBE2L6O14933 153 aa5.07□□□□□ -1.6
USP48-207ENST00000471752 EIF4EBP3O60516 100 aaPredicted RBP5.07□□□□□ -1.6
USP48-207ENST00000471752 PKIAP61925 76 aa5.07□□□□□ -1.6
USP48-207ENST00000471752 RNASEKQ6P5S7 137 aaKnown RBP5.07□□□□□ -1.6
USP48-207ENST00000471752 SMIM12Q96EX1 92 aa5.07□□□□□ -1.6
USP48-207ENST00000471752 TMEM242Q9NWH2 141 aa5.07□□□□□ -1.6
USP48-207ENST00000471752 A0A096LNI7 61 aa5.06□□□□□ -1.6
USP48-207ENST00000471752 XKRY2A2RUG3 117 aa5.06□□□□□ -1.6
USP48-207ENST00000471752 NCR2O95944 276 aa5.06□□□□□ -1.6
USP48-207ENST00000471752 ESDP10768 282 aa5.06□□□□□ -1.6
USP48-207ENST00000471752 XCL1P47992 114 aa5.06□□□□□ -1.6
USP48-207ENST00000471752 POLR2KP53803 58 aaKnown RBP5.06□□□□□ -1.6
USP48-207ENST00000471752 SRSF3P84103 164 aaKnown RBP5.06□□□□□ -1.6
USP48-207ENST00000471752 MAJINQ3KP22 176 aa5.06□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 1012.1 ms