RNA–Protein interactions for RNA: ENST00000470167.1

COL3A1-205, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2

Gene COL3A1, Length 628 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-205ENST00000470167 LEPROTO15243 131 aa3.6□□□□□ -1.83
COL3A1-205ENST00000470167 PROP1O75360 226 aa3.6□□□□□ -1.83
COL3A1-205ENST00000470167 P0C879 139 aa3.6□□□□□ -1.83
COL3A1-205ENST00000470167 ZNF32P17041 273 aa3.6□□□□□ -1.83
COL3A1-205ENST00000470167 EDDM3BP56851 147 aa3.6□□□□□ -1.83
COL3A1-205ENST00000470167 C9orf116Q5BN46 136 aaPredicted RBP3.6□□□□□ -1.83
COL3A1-205ENST00000470167 DEFB106AQ8N104 65 aa3.6□□□□□ -1.83
COL3A1-205ENST00000470167 FAM218AQ96MZ4 157 aa3.6□□□□□ -1.83
COL3A1-205ENST00000470167 LINC00846Q9NV44 126 aa3.6□□□□□ -1.83
COL3A1-205ENST00000470167 SPTAN1Q13813 2472 aaKnown RBP3.6□□□□□ -1.83
COL3A1-205ENST00000470167 TRBV6-6A0A0A6YYG2 114 aa3.59□□□□□ -1.83
COL3A1-205ENST00000470167 FSHBP01225 129 aa3.59□□□□□ -1.83
COL3A1-205ENST00000470167 DEFA4P12838 97 aa3.59□□□□□ -1.83
COL3A1-205ENST00000470167 RPL27AP46776 148 aaKnown RBP3.59□□□□□ -1.83
COL3A1-205ENST00000470167 BSPH1Q075Z2 132 aa3.59□□□□□ -1.83
COL3A1-205ENST00000470167 LCE5AQ5TCM9 118 aa3.59□□□□□ -1.83
COL3A1-205ENST00000470167 AMELXQ99217 191 aa3.59□□□□□ -1.83
COL3A1-205ENST00000470167 SNURFQ9Y675 71 aa3.59□□□□□ -1.83
COL3A1-205ENST00000470167 DYSFO75923 2080 aa3.59□□□□□ -1.83
COL3A1-205ENST00000470167 RIF1Q5UIP0 2472 aaKnown RBP3.59□□□□□ -1.84
COL3A1-205ENST00000470167 DOCK7Q96N67 2140 aa3.58□□□□□ -1.84
COL3A1-205ENST00000470167 IGLV2-18A0A075B6J9 118 aa3.58□□□□□ -1.84
COL3A1-205ENST00000470167 TRBV6-8A0A0A6YYG3 113 aa3.58□□□□□ -1.84
COL3A1-205ENST00000470167 IGKV3D-20A0A0C4DH25 116 aa3.58□□□□□ -1.84
COL3A1-205ENST00000470167 IGHV3-16A0A0C4DH30 117 aa3.58□□□□□ -1.84
COL3A1-205ENST00000470167 LOC101927531A0A1B0GV80 90 aa3.58□□□□□ -1.84
COL3A1-205ENST00000470167 A8MU10 97 aa3.58□□□□□ -1.84
COL3A1-205ENST00000470167 ZNHIT1O43257 154 aa3.58□□□□□ -1.84
COL3A1-205ENST00000470167 PSCAO43653 123 aa3.58□□□□□ -1.84
COL3A1-205ENST00000470167 IGKV1-39P01597 117 aa3.58□□□□□ -1.84
COL3A1-205ENST00000470167 SLPIP03973 132 aa3.58□□□□□ -1.84
COL3A1-205ENST00000470167 IGKV1D-39P04432 117 aa3.58□□□□□ -1.84
COL3A1-205ENST00000470167 SPTSSBQ8NFR3 76 aa3.58□□□□□ -1.84
COL3A1-205ENST00000470167 TMEM254Q8TBM7 123 aa3.58□□□□□ -1.84
COL3A1-205ENST00000470167 KIF25-AS1Q9Y6Z4 181 aa3.58□□□□□ -1.84
COL3A1-205ENST00000470167 IGKV6D-21A0A0A0MT36 114 aa3.57□□□□□ -1.84
COL3A1-205ENST00000470167 I3L3M4 83 aa3.57□□□□□ -1.84
COL3A1-205ENST00000470167 NDUFA3O95167 84 aa3.57□□□□□ -1.84
COL3A1-205ENST00000470167 IGLV2-11P01706 119 aa3.57□□□□□ -1.84
COL3A1-205ENST00000470167 IGHV3-43DP0DP04 118 aa3.57□□□□□ -1.84
COL3A1-205ENST00000470167 MOBPQ13875 183 aa3.57□□□□□ -1.84
COL3A1-205ENST00000470167 ZNF833PQ6ZTB9 187 aa3.57□□□□□ -1.84
COL3A1-205ENST00000470167 SND1-IT1Q9HBX3 110 aa3.57□□□□□ -1.84
COL3A1-205ENST00000470167 XAGE1AQ9HD64 81 aa3.57□□□□□ -1.84
COL3A1-205ENST00000470167 CDC42SE2Q9NRR3 84 aa3.57□□□□□ -1.84
COL3A1-205ENST00000470167 WDR87Q6ZQQ6 2873 aa3.57□□□□□ -1.84
COL3A1-205ENST00000470167 ABCA2Q9BZC7 2435 aa3.56□□□□□ -1.84
COL3A1-205ENST00000470167 CNOT1A5YKK6 2376 aaKnown RBP3.56□□□□□ -1.84
COL3A1-205ENST00000470167 FAM186AA6NE01 2351 aa3.56□□□□□ -1.84
COL3A1-205ENST00000470167 IGKV6-21A0A0C4DH24 114 aa3.56□□□□□ -1.84
COL3A1-205ENST00000470167 IGKV6D-41A0A0C4DH26 115 aa3.56□□□□□ -1.84
COL3A1-205ENST00000470167 CHKB-CPT1BH3BT56 60 aa3.56□□□□□ -1.84
COL3A1-205ENST00000470167 K7EQD1 137 aa3.56□□□□□ -1.84
COL3A1-205ENST00000470167 ATP6V0E1O15342 81 aa3.56□□□□□ -1.84
COL3A1-205ENST00000470167 LY6G6DO95868 133 aa3.56□□□□□ -1.84
COL3A1-205ENST00000470167 IGLV1-51P01701 117 aa3.56□□□□□ -1.84
COL3A1-205ENST00000470167 TRGV3P03979 118 aa3.56□□□□□ -1.84
COL3A1-205ENST00000470167 ARMS2P0C7Q2 107 aa3.56□□□□□ -1.84
COL3A1-205ENST00000470167 BAALC-AS2P0C853 105 aa3.56□□□□□ -1.84
COL3A1-205ENST00000470167 CCL5P13501 91 aa3.56□□□□□ -1.84
COL3A1-205ENST00000470167 GNLYP22749 145 aa3.56□□□□□ -1.84
COL3A1-205ENST00000470167 RPL36AP83881 106 aaKnown RBP3.56□□□□□ -1.84
COL3A1-205ENST00000470167 C2orf83Q53S99 150 aa3.56□□□□□ -1.84
COL3A1-205ENST00000470167 FAM104AQ969W3 186 aa3.56□□□□□ -1.84
COL3A1-205ENST00000470167 RETNLBQ9BQ08 111 aa3.56□□□□□ -1.84
COL3A1-205ENST00000470167 MSRB1Q9NZV6 116 aa3.56□□□□□ -1.84
COL3A1-205ENST00000470167 SPTBN2O15020 2390 aa3.56□□□□□ -1.84
COL3A1-205ENST00000470167 POLQO75417 2590 aa3.56□□□□□ -1.84
COL3A1-205ENST00000470167 H3BSH0 61 aa3.55□□□□□ -1.84
COL3A1-205ENST00000470167 BRWD1-AS2P59051 145 aa3.55□□□□□ -1.84
COL3A1-205ENST00000470167 NANOS2P60321 138 aaKnown RBP3.55□□□□□ -1.84
COL3A1-205ENST00000470167 IGLV3-21P80748 117 aaPredicted RBP3.55□□□□□ -1.84
COL3A1-205ENST00000470167 REG3AQ06141 175 aa3.55□□□□□ -1.84
COL3A1-205ENST00000470167 DAZAP2Q15038 168 aaPredicted RBP3.55□□□□□ -1.84
COL3A1-205ENST00000470167 LINC00322Q6ZN03 302 aaPredicted RBP3.55□□□□□ -1.84
COL3A1-205ENST00000470167 MUSTN1Q8IVN3 82 aa3.55□□□□□ -1.84
COL3A1-205ENST00000470167 SCGB3A1Q96QR1 104 aa3.55□□□□□ -1.84
COL3A1-205ENST00000470167 B9D2Q9BPU9 175 aa3.55□□□□□ -1.84
COL3A1-205ENST00000470167 TMEM14CQ9P0S9 112 aa3.55□□□□□ -1.84
COL3A1-205ENST00000470167 CELA1Q9UNI1 258 aa3.55□□□□□ -1.84
COL3A1-205ENST00000470167 FRYQ5TBA9 3013 aa3.55□□□□□ -1.84
COL3A1-205ENST00000470167 NAV3Q8IVL0 2385 aa3.55□□□□□ -1.84
COL3A1-205ENST00000470167 IGLV3-16A0A075B6K0 115 aa3.54□□□□□ -1.84
COL3A1-205ENST00000470167 IGHV3OR16-12A0A075B7B8 117 aa3.54□□□□□ -1.84
COL3A1-205ENST00000470167 IGHV1OR15-1A0A075B7D0 117 aa3.54□□□□□ -1.84
COL3A1-205ENST00000470167 IGLV9-49A0A0B4J1Y8 123 aa3.54□□□□□ -1.84
COL3A1-205ENST00000470167 LY6G6EA0A0G2JKS1 128 aa3.54□□□□□ -1.84
COL3A1-205ENST00000470167 PATE4P0C8F1 98 aa3.54□□□□□ -1.84
COL3A1-205ENST00000470167 KRTAP15-1Q3LI76 137 aa3.54□□□□□ -1.84
COL3A1-205ENST00000470167 TMEM61Q8N0U2 210 aa3.54□□□□□ -1.84
COL3A1-205ENST00000470167 C14orf178Q8N769 122 aaPredicted RBP3.54□□□□□ -1.84
COL3A1-205ENST00000470167 Q8N814 137 aa3.54□□□□□ -1.84
COL3A1-205ENST00000470167 C1orf64Q8NEQ6 169 aa3.54□□□□□ -1.84
COL3A1-205ENST00000470167 CCL28Q9NRJ3 127 aa3.54□□□□□ -1.84
COL3A1-205ENST00000470167 C11orf21Q9P2W6 132 aa3.54□□□□□ -1.84
COL3A1-205ENST00000470167 XIRP2A4UGR9 3374 aa3.54□□□□□ -1.84
COL3A1-205ENST00000470167 UBR5O95071 2799 aaPredicted RBP3.54□□□□□ -1.84
COL3A1-205ENST00000470167 MYO9BQ13459 2157 aa3.53□□□□□ -1.84
COL3A1-205ENST00000470167 A0A0J9YXY3 114 aa3.53□□□□□ -1.84
COL3A1-205ENST00000470167 LCE6AA0A183 80 aa3.53□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 73 ms