RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 C11orf72Q8NBR9 251 aa13.87□□□□□ -0.19
VIM-203ENST00000469543 M0R2P5 195 aa13.86□□□□□ -0.19
VIM-203ENST00000469543 APOMO95445 188 aa13.86□□□□□ -0.19
VIM-203ENST00000469543 ADARB2-AS1A8MUL3 147 aa13.86□□□□□ -0.19
VIM-203ENST00000469543 AMELXQ99217 191 aa13.86□□□□□ -0.19
VIM-203ENST00000469543 WFDC2Q14508 124 aa13.85□□□□□ -0.19
VIM-203ENST00000469543 SPXQ9BT56 116 aa13.85□□□□□ -0.19
VIM-203ENST00000469543 VCX2Q9H322 139 aa13.85□□□□□ -0.19
VIM-203ENST00000469543 TNFRSF18Q9Y5U5 241 aa13.85□□□□□ -0.19
VIM-203ENST00000469543 IGKV2D-29A0A075B6S2 120 aaPredicted RBP13.85□□□□□ -0.19
VIM-203ENST00000469543 IGKV2-29A2NJV5 120 aaPredicted RBP13.85□□□□□ -0.19
VIM-203ENST00000469543 WFDC10AQ9H1F0 79 aa13.85□□□□□ -0.19
VIM-203ENST00000469543 PGPEP1Q9NXJ5 209 aa13.85□□□□□ -0.19
VIM-203ENST00000469543 LINC01549A6NIU2 74 aa13.84□□□□□ -0.19
VIM-203ENST00000469543 J3QQQ9 107 aa13.84□□□□□ -0.19
VIM-203ENST00000469543 OTOGQ6ZRI0 2925 aa13.84□□□□□ -0.19
VIM-203ENST00000469543 A8MTW9 85 aa13.84□□□□□ -0.19
VIM-203ENST00000469543 CCL24O00175 119 aa13.84□□□□□ -0.19
VIM-203ENST00000469543 RPL24P83731 157 aaKnown RBP13.84□□□□□ -0.19
VIM-203ENST00000469543 RHOHQ15669 191 aa13.84□□□□□ -0.19
VIM-203ENST00000469543 OR5A1Q8NGJ0 315 aa13.84□□□□□ -0.19
VIM-203ENST00000469543 A8MZ25 164 aa13.83□□□□□ -0.2
VIM-203ENST00000469543 HERVK_113P61574 105 aa13.83□□□□□ -0.2
VIM-203ENST00000469543 RRN3P1Q2M238 152 aa13.83□□□□□ -0.2
VIM-203ENST00000469543 K7ERU9 68 aa13.82□□□□□ -0.2
VIM-203ENST00000469543 ZNF22P17026 224 aaPredicted RBP13.82□□□□□ -0.2
VIM-203ENST00000469543 PAPPA-AS1Q5QFB9 102 aa13.82□□□□□ -0.2
VIM-203ENST00000469543 TRAV8-3A0A0A6YYJ7 113 aa13.82□□□□□ -0.2
VIM-203ENST00000469543 ZNF415Q09FC8 603 aa13.81□□□□□ -0.2
VIM-203ENST00000469543 C1orf158Q8N1D5 194 aa13.81□□□□□ -0.2
VIM-203ENST00000469543 A0A1B0GWB2 263 aa13.81□□□□□ -0.2
VIM-203ENST00000469543 TMEM223A0PJW6 202 aa13.81□□□□□ -0.2
VIM-203ENST00000469543 A8MWV9 139 aa13.81□□□□□ -0.2
VIM-203ENST00000469543 RHODO00212 210 aa13.81□□□□□ -0.2
VIM-203ENST00000469543 IGHV3-53P01767 116 aa13.81□□□□□ -0.2
VIM-203ENST00000469543 TEX48A0A1B0GUV7 120 aa13.8□□□□□ -0.2
VIM-203ENST00000469543 KRTAP1-1Q07627 177 aa13.8□□□□□ -0.2
VIM-203ENST00000469543 SH2D6Q7Z4S9 175 aa13.8□□□□□ -0.2
VIM-203ENST00000469543 NFE4Q86UQ8 179 aa13.8□□□□□ -0.2
VIM-203ENST00000469543 YAE1D1Q9NRH1 226 aa13.8□□□□□ -0.2
VIM-203ENST00000469543 LGALS3P17931 250 aaKnown RBP13.8□□□□□ -0.2
VIM-203ENST00000469543 STHQ8IWL8 128 aa13.8□□□□□ -0.2
VIM-203ENST00000469543 SMR3AQ99954 134 aa13.8□□□□□ -0.2
VIM-203ENST00000469543 PLA2G2AP14555 144 aa13.79□□□□□ -0.2
VIM-203ENST00000469543 LINC01006Q8NI28 216 aa13.79□□□□□ -0.2
VIM-203ENST00000469543 TENM1Q9UKZ4 2725 aa13.79□□□□□ -0.2
VIM-203ENST00000469543 INSP01308 110 aa13.79□□□□□ -0.2
VIM-203ENST00000469543 CHCHD7Q9BUK0 85 aa13.79□□□□□ -0.2
VIM-203ENST00000469543 IGHV3-30P01768 117 aa13.78□□□□□ -0.2
VIM-203ENST00000469543 IGHV3-30-5P0DP03 117 aa13.78□□□□□ -0.2
VIM-203ENST00000469543 SLC25A29Q8N8R3 303 aa13.78□□□□□ -0.2
VIM-203ENST00000469543 LINC00467Q9BRT7 94 aa13.78□□□□□ -0.2
VIM-203ENST00000469543 TRGV1A0A0A0MS02 117 aa13.77□□□□□ -0.2
VIM-203ENST00000469543 TRAV2A0A0B4J234 112 aa13.77□□□□□ -0.2
VIM-203ENST00000469543 LOC107984156A0A0G2JMH3 177 aa13.77□□□□□ -0.2
VIM-203ENST00000469543 G3V4G9 280 aa13.77□□□□□ -0.2
VIM-203ENST00000469543 UBE2D1P51668 147 aa13.77□□□□□ -0.2
VIM-203ENST00000469543 ARL17AQ8IVW1 177 aa13.77□□□□□ -0.2
VIM-203ENST00000469543 FHL3Q13643 280 aa13.77□□□□□ -0.21
VIM-203ENST00000469543 ETDBQ3ZM63 59 aa13.77□□□□□ -0.21
VIM-203ENST00000469543 TSPAN13O95857 204 aa13.77□□□□□ -0.21
VIM-203ENST00000469543 C10orf126Q8N4M7 172 aa13.77□□□□□ -0.21
VIM-203ENST00000469543 CFC1BP0CG36 223 aa13.76□□□□□ -0.21
VIM-203ENST00000469543 CFC1P0CG37 223 aa13.76□□□□□ -0.21
VIM-203ENST00000469543 Q6ZTI0 123 aa13.76□□□□□ -0.21
VIM-203ENST00000469543 NDUFA11Q86Y39 141 aa13.76□□□□□ -0.21
VIM-203ENST00000469543 TMEM86BQ8N661 226 aa13.75□□□□□ -0.21
VIM-203ENST00000469543 UBE2D4Q9Y2X8 147 aa13.75□□□□□ -0.21
VIM-203ENST00000469543 Q6ZUT4 128 aa13.75□□□□□ -0.21
VIM-203ENST00000469543 KMT2BQ9UMN6 2715 aaPredicted RBP13.74□□□□□ -0.21
VIM-203ENST00000469543 EIF4EBP3O60516 100 aaPredicted RBP13.74□□□□□ -0.21
VIM-203ENST00000469543 NDUFA7O95182 113 aa13.74□□□□□ -0.21
VIM-203ENST00000469543 IGHV3-30-3P0DP02 117 aa13.74□□□□□ -0.21
VIM-203ENST00000469543 LEPROTO15243 131 aa13.73□□□□□ -0.21
VIM-203ENST00000469543 RPL35AP18077 110 aaKnown RBP13.73□□□□□ -0.21
VIM-203ENST00000469543 INSL3P51460 131 aa13.73□□□□□ -0.21
VIM-203ENST00000469543 BEAN1Q3B7T3 259 aa13.73□□□□□ -0.21
VIM-203ENST00000469543 A4D1N5 150 aa13.72□□□□□ -0.21
VIM-203ENST00000469543 H7C2G1 150 aa13.72□□□□□ -0.21
VIM-203ENST00000469543 SPINK8P0C7L1 97 aa13.72□□□□□ -0.21
VIM-203ENST00000469543 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP13.72□□□□□ -0.21
VIM-203ENST00000469543 EDA2RQ9HAV5 297 aa13.72□□□□□ -0.21
VIM-203ENST00000469543 TMEM238LA0A1B0GVL6 79 aa13.72□□□□□ -0.21
VIM-203ENST00000469543 A6NJY4 79 aa13.72□□□□□ -0.21
VIM-203ENST00000469543 GIG44P09565 113 aaPredicted RBP13.72□□□□□ -0.21
VIM-203ENST00000469543 PYGO1Q9Y3Y4 419 aa13.72□□□□□ -0.21
VIM-203ENST00000469543 LINC00694P0DN24 101 aa13.71□□□□□ -0.21
VIM-203ENST00000469543 PSMB2P49721 201 aa13.71□□□□□ -0.21
VIM-203ENST00000469543 MRPS36P82909 103 aaKnown RBP13.71□□□□□ -0.21
VIM-203ENST00000469543 GAGE13Q4V321 117 aa13.71□□□□□ -0.21
VIM-203ENST00000469543 MUSTN1Q8IVN3 82 aa13.71□□□□□ -0.21
VIM-203ENST00000469543 RS1O15537 224 aa13.71□□□□□ -0.22
VIM-203ENST00000469543 NPC2P61916 151 aa13.71□□□□□ -0.22
VIM-203ENST00000469543 NOP10Q9NPE3 64 aaKnown RBP13.71□□□□□ -0.22
VIM-203ENST00000469543 PRO0461Q9UI25 63 aa13.71□□□□□ -0.22
VIM-203ENST00000469543 TIMM21Q9BVV7 248 aa13.7□□□□□ -0.22
VIM-203ENST00000469543 SPANXB1Q9NS25 103 aaPredicted RBP13.7□□□□□ -0.22
VIM-203ENST00000469543 F8W1H4 67 aa13.69□□□□□ -0.22
VIM-203ENST00000469543 COTL1Q14019 142 aa13.69□□□□□ -0.22
VIM-203ENST00000469543 ADAMTSL4-AS1Q5T5F5 129 aa13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 76.9 ms