RNA–Protein interactions for RNA: ENST00000465425.1

SYNE4-204, Transcript of spectrin repeat containing nuclear envelope family member 4, humanhuman

TSL 2

Gene SYNE4, Length 2,339 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4-204ENST00000465425 C10orf126Q8N4M7 172 aa13.35□□□□□ -0.27
SYNE4-204ENST00000465425 SPXQ9BT56 116 aa13.35□□□□□ -0.27
SYNE4-204ENST00000465425 CRYBA4P53673 196 aa13.35□□□□□ -0.27
SYNE4-204ENST00000465425 CEMP1Q6PRD7 247 aaPredicted RBP13.35□□□□□ -0.27
SYNE4-204ENST00000465425 TIMM21Q9BVV7 248 aa13.34□□□□□ -0.27
SYNE4-204ENST00000465425 PRO1854Q9UHT4 67 aa13.34□□□□□ -0.27
SYNE4-204ENST00000465425 TMEM238C9JI98 176 aa13.34□□□□□ -0.27
SYNE4-204ENST00000465425 HIST2H2BDQ6DRA6 164 aa13.34□□□□□ -0.27
SYNE4-204ENST00000465425 PTH2Q96A98 100 aa13.34□□□□□ -0.27
SYNE4-204ENST00000465425 MRPS36P82909 103 aaKnown RBP13.33□□□□□ -0.28
SYNE4-204ENST00000465425 Q6ZSN1 163 aa13.33□□□□□ -0.28
SYNE4-204ENST00000465425 RNASE13Q5GAN3 156 aaKnown RBP13.33□□□□□ -0.28
SYNE4-204ENST00000465425 C11orf72Q8NBR9 251 aa13.33□□□□□ -0.28
SYNE4-204ENST00000465425 Q9UF83 564 aa13.33□□□□□ -0.28
SYNE4-204ENST00000465425 A4D1N5 150 aa13.32□□□□□ -0.28
SYNE4-204ENST00000465425 IGHV3-30-3P0DP02 117 aa13.32□□□□□ -0.28
SYNE4-204ENST00000465425 LINC00467Q9BRT7 94 aa13.32□□□□□ -0.28
SYNE4-204ENST00000465425 SPANXA1Q9NS26 97 aa13.32□□□□□ -0.28
SYNE4-204ENST00000465425 TSSC4Q9Y5U2 329 aaPredicted RBP13.32□□□□□ -0.28
SYNE4-204ENST00000465425 TRBV20-1A0A075B6N2 111 aa13.31□□□□□ -0.28
SYNE4-204ENST00000465425 SCGB1C2P0DMR2 95 aa13.31□□□□□ -0.28
SYNE4-204ENST00000465425 ZNF418Q8TF45 676 aaPredicted RBP13.31□□□□□ -0.28
SYNE4-204ENST00000465425 FAM104AQ969W3 186 aa13.31□□□□□ -0.28
SYNE4-204ENST00000465425 IGHV3-53P01767 116 aa13.3□□□□□ -0.28
SYNE4-204ENST00000465425 TMEM86BQ8N661 226 aa13.3□□□□□ -0.28
SYNE4-204ENST00000465425 DNAJC30Q96LL9 226 aa13.3□□□□□ -0.28
SYNE4-204ENST00000465425 CHCHD7Q9BUK0 85 aa13.3□□□□□ -0.28
SYNE4-204ENST00000465425 UBE2D4Q9Y2X8 147 aa13.3□□□□□ -0.28
SYNE4-204ENST00000465425 IGKV2D-29A0A075B6S2 120 aaPredicted RBP13.3□□□□□ -0.28
SYNE4-204ENST00000465425 IGKV2-29A2NJV5 120 aaPredicted RBP13.3□□□□□ -0.28
SYNE4-204ENST00000465425 Q6ZSV7 163 aa13.3□□□□□ -0.28
SYNE4-204ENST00000465425 XCL2Q9UBD3 114 aa13.3□□□□□ -0.28
SYNE4-204ENST00000465425 IGHV3-38A0A0C4DH36 116 aa13.29□□□□□ -0.28
SYNE4-204ENST00000465425 GAGE12HA6NDE8 117 aa13.29□□□□□ -0.28
SYNE4-204ENST00000465425 MUSTN1Q8IVN3 82 aa13.29□□□□□ -0.28
SYNE4-204ENST00000465425 STHQ8IWL8 128 aa13.29□□□□□ -0.28
SYNE4-204ENST00000465425 A0A0J9YXY3 114 aa13.29□□□□□ -0.28
SYNE4-204ENST00000465425 TCL1BO95988 128 aa13.29□□□□□ -0.28
SYNE4-204ENST00000465425 BEAN1Q3B7T3 259 aa13.29□□□□□ -0.28
SYNE4-204ENST00000465425 C1QTNF4Q9BXJ3 329 aa13.29□□□□□ -0.28
SYNE4-204ENST00000465425 IGHV3OR16-12A0A075B7B8 117 aa13.28□□□□□ -0.28
SYNE4-204ENST00000465425 TRAV8-3A0A0A6YYJ7 113 aa13.28□□□□□ -0.28
SYNE4-204ENST00000465425 NACAE9PAV3 2078 aa13.28□□□□□ -0.28
SYNE4-204ENST00000465425 IGHV1-58A0A0C4DH39 117 aa13.28□□□□□ -0.28
SYNE4-204ENST00000465425 TINCRA0A1B0GVN0 87 aa13.28□□□□□ -0.28
SYNE4-204ENST00000465425 ADARB2-AS1A8MUL3 147 aa13.28□□□□□ -0.28
SYNE4-204ENST00000465425 INSL3P51460 131 aa13.28□□□□□ -0.28
SYNE4-204ENST00000465425 C11orf44Q8N8P7 122 aa13.28□□□□□ -0.28
SYNE4-204ENST00000465425 SIGMAR1Q99720 223 aa13.28□□□□□ -0.28
SYNE4-204ENST00000465425 TRAV16A0A0A6YYK6 109 aaPredicted RBP13.27□□□□□ -0.28
SYNE4-204ENST00000465425 A0A1W2PRX2 142 aa13.27□□□□□ -0.28
SYNE4-204ENST00000465425 SMCPP49901 116 aaPredicted RBP13.27□□□□□ -0.28
SYNE4-204ENST00000465425 ODF3L2Q3SX64 289 aa13.27□□□□□ -0.28
SYNE4-204ENST00000465425 TEX29Q8N6K0 151 aa13.27□□□□□ -0.28
SYNE4-204ENST00000465425 ATP6V0E2Q8NHE4 81 aa13.27□□□□□ -0.28
SYNE4-204ENST00000465425 TLN2Q9Y4G6 2542 aa13.27□□□□□ -0.29
SYNE4-204ENST00000465425 A0A0B4J2C4 111 aa13.27□□□□□ -0.29
SYNE4-204ENST00000465425 RS1O15537 224 aa13.27□□□□□ -0.29
SYNE4-204ENST00000465425 KRTAP1-3Q8IUG1 177 aa13.27□□□□□ -0.29
SYNE4-204ENST00000465425 GTSF1LQ9H1H1 148 aa13.27□□□□□ -0.29
SYNE4-204ENST00000465425 TRAV25A0A0B4J276 109 aa13.26□□□□□ -0.29
SYNE4-204ENST00000465425 DNAJC9-AS1A6NH13 148 aa13.26□□□□□ -0.29
SYNE4-204ENST00000465425 FOXI1Q12951 378 aa13.26□□□□□ -0.29
SYNE4-204ENST00000465425 Q6ZUT4 128 aa13.26□□□□□ -0.29
SYNE4-204ENST00000465425 GEMIN7Q9H840 131 aaKnown RBP13.26□□□□□ -0.29
SYNE4-204ENST00000465425 ERG28Q9UKR5 140 aa13.26□□□□□ -0.29
SYNE4-204ENST00000465425 ZNF469Q96JG9 3925 aaPredicted RBP13.26□□□□□ -0.29
SYNE4-204ENST00000465425 AZU1P20160 251 aa13.25□□□□□ -0.29
SYNE4-204ENST00000465425 TMEM263Q8WUH6 116 aaKnown RBP13.25□□□□□ -0.29
SYNE4-204ENST00000465425 CLUHP3Q96NS8 147 aa13.25□□□□□ -0.29
SYNE4-204ENST00000465425 NDUFA12Q9UI09 145 aa13.25□□□□□ -0.29
SYNE4-204ENST00000465425 H7C2G1 150 aa13.25□□□□□ -0.29
SYNE4-204ENST00000465425 IGHV3-33P01772 117 aa13.24□□□□□ -0.29
SYNE4-204ENST00000465425 DGAT2L7PQ6IED9 249 aa13.24□□□□□ -0.29
SYNE4-204ENST00000465425 VSIG2Q96IQ7 327 aa13.24□□□□□ -0.29
SYNE4-204ENST00000465425 SPATA25Q9BR10 227 aa13.24□□□□□ -0.29
SYNE4-204ENST00000465425 PRSS2P07478 247 aa13.24□□□□□ -0.29
SYNE4-204ENST00000465425 SPINK8P0C7L1 97 aa13.24□□□□□ -0.29
SYNE4-204ENST00000465425 Q1RN00 199 aa13.24□□□□□ -0.29
SYNE4-204ENST00000465425 CHD6Q8TD26 2715 aa13.23□□□□□ -0.29
SYNE4-204ENST00000465425 TRGV1A0A0A0MS02 117 aa13.23□□□□□ -0.29
SYNE4-204ENST00000465425 CCL24O00175 119 aa13.23□□□□□ -0.29
SYNE4-204ENST00000465425 APCP25054 2843 aa13.23□□□□□ -0.29
SYNE4-204ENST00000465425 EPG5Q9HCE0 2579 aa13.23□□□□□ -0.29
SYNE4-204ENST00000465425 WFDC11Q8NEX6 87 aa13.22□□□□□ -0.29
SYNE4-204ENST00000465425 AKAP9Q99996 3911 aa13.22□□□□□ -0.29
SYNE4-204ENST00000465425 EIF4EBP3O60516 100 aaPredicted RBP13.22□□□□□ -0.29
SYNE4-204ENST00000465425 FHL3Q13643 280 aa13.22□□□□□ -0.29
SYNE4-204ENST00000465425 C1orf158Q8N1D5 194 aa13.22□□□□□ -0.29
SYNE4-204ENST00000465425 SONP18583 2426 aaKnown RBP13.21□□□□□ -0.29
SYNE4-204ENST00000465425 SMAGPQ0VAQ4 97 aa13.21□□□□□ -0.29
SYNE4-204ENST00000465425 TEN1Q86WV5 123 aa13.21□□□□□ -0.29
SYNE4-204ENST00000465425 LITAFQ99732 161 aa13.21□□□□□ -0.29
SYNE4-204ENST00000465425 A8MZ25 164 aa13.2□□□□□ -0.3
SYNE4-204ENST00000465425 SPANXDQ9BXN6 97 aa13.19□□□□□ -0.3
SYNE4-204ENST00000465425 SPANXCQ9NY87 97 aa13.19□□□□□ -0.3
SYNE4-204ENST00000465425 PPDPFLQ8WWR9 84 aa13.19□□□□□ -0.3
SYNE4-204ENST00000465425 ITPR3Q14573 2671 aa13.19□□□□□ -0.3
SYNE4-204ENST00000465425 CDKN2A-AS1Q9UH64 79 aa13.18□□□□□ -0.3
SYNE4-204ENST00000465425 WNK1Q9H4A3 2382 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms