RNA–Protein interactions for RNA: ENST00000463818.1

SF3A1-205, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 583 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-205ENST00000463818 FAM74A3Q4VXF1 159 aa12.23□□□□□ -0.45
SF3A1-205ENST00000463818 CT83Q5H943 113 aa12.23□□□□□ -0.45
SF3A1-205ENST00000463818 LINC01551Q86U37 167 aa12.23□□□□□ -0.45
SF3A1-205ENST00000463818 DPH3P1Q9H4G8 78 aa12.23□□□□□ -0.45
SF3A1-205ENST00000463818 RPP21Q9H633 154 aaKnown RBP12.23□□□□□ -0.45
SF3A1-205ENST00000463818 NIT2Q9NQR4 276 aa12.23□□□□□ -0.45
SF3A1-205ENST00000463818 C9JQL5 133 aa12.22□□□□□ -0.45
SF3A1-205ENST00000463818 J3QL48 77 aa12.22□□□□□ -0.45
SF3A1-205ENST00000463818 DEFB104AQ8WTQ1 72 aa12.22□□□□□ -0.45
SF3A1-205ENST00000463818 RNASE7Q9H1E1 156 aaKnown RBP12.22□□□□□ -0.45
SF3A1-205ENST00000463818 ZNF727A8MUV8 499 aa12.21□□□□□ -0.45
SF3A1-205ENST00000463818 SRSF3P84103 164 aaKnown RBP12.21□□□□□ -0.45
SF3A1-205ENST00000463818 REG3AQ06141 175 aa12.21□□□□□ -0.45
SF3A1-205ENST00000463818 TWIST1Q15672 202 aa12.21□□□□□ -0.45
SF3A1-205ENST00000463818 DGAT2L7PQ6IED9 249 aa12.21□□□□□ -0.45
SF3A1-205ENST00000463818 C20orf203Q8NBC4 194 aa12.21□□□□□ -0.45
SF3A1-205ENST00000463818 TMEM243Q9BU79 118 aa12.21□□□□□ -0.45
SF3A1-205ENST00000463818 PEA15Q15121 130 aa12.2□□□□□ -0.46
SF3A1-205ENST00000463818 IGLV4-60A0A075B6I1 120 aa12.19□□□□□ -0.46
SF3A1-205ENST00000463818 IGLV10-54A0A075B6I4 117 aa12.19□□□□□ -0.46
SF3A1-205ENST00000463818 A0A1B0GUV1 79 aa12.19□□□□□ -0.46
SF3A1-205ENST00000463818 CEBPGP53567 150 aa12.19□□□□□ -0.46
SF3A1-205ENST00000463818 FOXA3P55318 350 aaPredicted RBP12.19□□□□□ -0.46
SF3A1-205ENST00000463818 CLLU1Q5K131 121 aa12.19□□□□□ -0.46
SF3A1-205ENST00000463818 IFITM2Q01629 132 aa12.18□□□□□ -0.46
SF3A1-205ENST00000463818 C9orf163Q8N9P6 203 aa12.18□□□□□ -0.46
SF3A1-205ENST00000463818 GTSF1Q8WW33 167 aa12.18□□□□□ -0.46
SF3A1-205ENST00000463818 PGLYRP4Q96LB8 373 aa12.18□□□□□ -0.46
SF3A1-205ENST00000463818 GFRA4Q9GZZ7 299 aa12.18□□□□□ -0.46
SF3A1-205ENST00000463818 OSTCQ9NRP0 149 aa12.18□□□□□ -0.46
SF3A1-205ENST00000463818 TRAV8-4A0A0B4J246 113 aa12.17□□□□□ -0.46
SF3A1-205ENST00000463818 KRTAP29-1A8MX34 341 aaPredicted RBP12.17□□□□□ -0.46
SF3A1-205ENST00000463818 KRTAP10-4P60372 401 aaPredicted RBP12.17□□□□□ -0.46
SF3A1-205ENST00000463818 COTL1Q14019 142 aa12.17□□□□□ -0.46
SF3A1-205ENST00000463818 GATD1Q8NB37 220 aa12.17□□□□□ -0.46
SF3A1-205ENST00000463818 CLRN3Q8NCR9 226 aa12.17□□□□□ -0.46
SF3A1-205ENST00000463818 FAM231BA6NCW3 169 aa12.16□□□□□ -0.46
SF3A1-205ENST00000463818 AMTP48728 403 aa12.16□□□□□ -0.46
SF3A1-205ENST00000463818 RAB14P61106 215 aa12.16□□□□□ -0.46
SF3A1-205ENST00000463818 TMEM241Q24JQ0 296 aa12.16□□□□□ -0.46
SF3A1-205ENST00000463818 NAT8Q9UHE5 227 aa12.16□□□□□ -0.46
SF3A1-205ENST00000463818 TRAV26-2A0A0B4J265 109 aa12.15□□□□□ -0.46
SF3A1-205ENST00000463818 A8MWL6 223 aa12.15□□□□□ -0.46
SF3A1-205ENST00000463818 UBE2L6O14933 153 aa12.15□□□□□ -0.46
SF3A1-205ENST00000463818 GATCO43716 136 aaKnown RBP12.15□□□□□ -0.46
SF3A1-205ENST00000463818 RPL23P62829 140 aaKnown RBP12.15□□□□□ -0.46
SF3A1-205ENST00000463818 ISOC2Q96AB3 205 aa12.15□□□□□ -0.46
SF3A1-205ENST00000463818 SDIM1Q6ZPB5 146 aa12.13□□□□□ -0.47
SF3A1-205ENST00000463818 TSKUQ8WUA8 353 aa12.13□□□□□ -0.47
SF3A1-205ENST00000463818 V9GYV3 84 aa12.13□□□□□ -0.47
SF3A1-205ENST00000463818 hDV102S1A0JD36 115 aa12.12□□□□□ -0.47
SF3A1-205ENST00000463818 SMIM15Q7Z3B0 74 aa12.12□□□□□ -0.47
SF3A1-205ENST00000463818 RPL39LQ96EH5 51 aaKnown RBP12.12□□□□□ -0.47
SF3A1-205ENST00000463818 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP12.12□□□□□ -0.47
SF3A1-205ENST00000463818 PANO1I0J062 215 aa12.11□□□□□ -0.47
SF3A1-205ENST00000463818 CNBPP62633 177 aaKnown RBP12.1□□□□□ -0.47
SF3A1-205ENST00000463818 SLPIP03973 132 aa12.09□□□□□ -0.47
SF3A1-205ENST00000463818 RPL37AP61513 92 aaKnown RBP12.09□□□□□ -0.47
SF3A1-205ENST00000463818 AP5S1Q9NUS5 200 aa12.09□□□□□ -0.47
SF3A1-205ENST00000463818 LRP1Q07954 4544 aaKnown RBP12.08□□□□□ -0.48
SF3A1-205ENST00000463818 IGKV3OR2-268A0A0C4DH90 116 aa12.08□□□□□ -0.48
SF3A1-205ENST00000463818 HIGD1CA8MV81 97 aa12.08□□□□□ -0.48
SF3A1-205ENST00000463818 ADIRFQ15847 76 aa12.08□□□□□ -0.48
SF3A1-205ENST00000463818 GAGE12HA6NDE8 117 aa12.07□□□□□ -0.48
SF3A1-205ENST00000463818 NCR2O95944 276 aa12.07□□□□□ -0.48
SF3A1-205ENST00000463818 AMMECR1LQ6DCA0 310 aa12.07□□□□□ -0.48
SF3A1-205ENST00000463818 IGKV2D-29A0A075B6S2 120 aaPredicted RBP12.06□□□□□ -0.48
SF3A1-205ENST00000463818 TRAV16A0A0A6YYK6 109 aaPredicted RBP12.06□□□□□ -0.48
SF3A1-205ENST00000463818 IGKV2-29A2NJV5 120 aaPredicted RBP12.06□□□□□ -0.48
SF3A1-205ENST00000463818 SDHAF1A6NFY7 115 aa12.06□□□□□ -0.48
SF3A1-205ENST00000463818 RNASEKQ6P5S7 137 aaKnown RBP12.06□□□□□ -0.48
SF3A1-205ENST00000463818 UQCC3Q6UW78 93 aa12.06□□□□□ -0.48
SF3A1-205ENST00000463818 DPH3Q96FX2 82 aa12.06□□□□□ -0.48
SF3A1-205ENST00000463818 IGHV3-64A0A075B6Q5 118 aa12.05□□□□□ -0.48
SF3A1-205ENST00000463818 A0A1B0GUT8 65 aa12.05□□□□□ -0.48
SF3A1-205ENST00000463818 SMIM27A0A1W2PRY6 76 aa12.05□□□□□ -0.48
SF3A1-205ENST00000463818 H7C423 109 aa12.05□□□□□ -0.48
SF3A1-205ENST00000463818 OXTP01178 125 aa12.05□□□□□ -0.48
SF3A1-205ENST00000463818 APCSP02743 223 aa12.05□□□□□ -0.48
SF3A1-205ENST00000463818 PMCHP20382 165 aa12.05□□□□□ -0.48
SF3A1-205ENST00000463818 PNRC1Q12796 327 aaPredicted RBP12.05□□□□□ -0.48
SF3A1-205ENST00000463818 CFAP161Q6P656 301 aa12.05□□□□□ -0.48
SF3A1-205ENST00000463818 FAT3Q8TDW7 4589 aa12.04□□□□□ -0.48
SF3A1-205ENST00000463818 FGF6P10767 208 aa12.04□□□□□ -0.48
SF3A1-205ENST00000463818 NUP35Q8NFH5 326 aa12.04□□□□□ -0.48
SF3A1-205ENST00000463818 BORCS7Q96B45 105 aa12.04□□□□□ -0.48
SF3A1-205ENST00000463818 TRBV6-5A0A0K0K1A5 114 aa12.03□□□□□ -0.48
SF3A1-205ENST00000463818 I3L3M4 83 aa12.03□□□□□ -0.48
SF3A1-205ENST00000463818 GAS8-AS1O95177 125 aa12.03□□□□□ -0.48
SF3A1-205ENST00000463818 CIRBPQ14011 172 aaKnown RBP12.03□□□□□ -0.48
SF3A1-205ENST00000463818 C15orf56Q8N910 161 aa12.03□□□□□ -0.48
SF3A1-205ENST00000463818 CHCHD10Q8WYQ3 142 aaPredicted RBP12.03□□□□□ -0.48
SF3A1-205ENST00000463818 TMEM191AQ9H0A3 160 aa12.03□□□□□ -0.48
SF3A1-205ENST00000463818 NAT8BQ9UHF3 227 aa12.03□□□□□ -0.48
SF3A1-205ENST00000463818 HNRNPA3P51991 378 aaKnown RBP12.02□□□□□ -0.49
SF3A1-205ENST00000463818 ST20Q9HBF5 79 aa12.01□□□□□ -0.49
SF3A1-205ENST00000463818 CHTF8P0CG12 524 aa12□□□□□ -0.49
SF3A1-205ENST00000463818 HIGD2BQ4VC39 106 aa12□□□□□ -0.49
SF3A1-205ENST00000463818 RNF185Q96GF1 192 aa12□□□□□ -0.49
SF3A1-205ENST00000463818 A0A087WYN8 130 aa11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms