RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 P01737 135 aa10.26□□□□□ -0.77
COL7A1-204ENST00000462475 SLPIP03973 132 aa10.26□□□□□ -0.77
COL7A1-204ENST00000462475 MT1HL1P0DM35 61 aa10.26□□□□□ -0.77
COL7A1-204ENST00000462475 RPS20P60866 119 aaKnown RBP10.26□□□□□ -0.77
COL7A1-204ENST00000462475 CACNG7P62955 275 aa10.26□□□□□ -0.77
COL7A1-204ENST00000462475 RASL11AQ6T310 242 aa10.26□□□□□ -0.77
COL7A1-204ENST00000462475 COMMD7Q86VX2 200 aa10.26□□□□□ -0.77
COL7A1-204ENST00000462475 A0A1B0GUV1 79 aa10.25□□□□□ -0.77
COL7A1-204ENST00000462475 RAB19A4D1S5 217 aa10.25□□□□□ -0.77
COL7A1-204ENST00000462475 CHTF8P0CG12 524 aa10.25□□□□□ -0.77
COL7A1-204ENST00000462475 S100A1P23297 94 aa10.25□□□□□ -0.77
COL7A1-204ENST00000462475 IGHV3-64A0A075B6Q5 118 aa10.24□□□□□ -0.77
COL7A1-204ENST00000462475 PGLYRP4Q96LB8 373 aa10.24□□□□□ -0.77
COL7A1-204ENST00000462475 TNXBP22105 4242 aa10.23□□□□□ -0.77
COL7A1-204ENST00000462475 TRBV20OR9-2A0A075B6H5 130 aa10.23□□□□□ -0.77
COL7A1-204ENST00000462475 A0A087WYN8 130 aa10.23□□□□□ -0.77
COL7A1-204ENST00000462475 TRAV1-1A0A0B4J248 108 aa10.23□□□□□ -0.77
COL7A1-204ENST00000462475 TRGC1P0CF51 173 aa10.23□□□□□ -0.77
COL7A1-204ENST00000462475 GNG4P50150 75 aa10.23□□□□□ -0.77
COL7A1-204ENST00000462475 LYZL1Q6UWQ5 148 aa10.23□□□□□ -0.77
COL7A1-204ENST00000462475 DPH3P1Q9H4G8 78 aa10.23□□□□□ -0.77
COL7A1-204ENST00000462475 NIT2Q9NQR4 276 aa10.23□□□□□ -0.77
COL7A1-204ENST00000462475 AP5S1Q9NUS5 200 aa10.23□□□□□ -0.77
COL7A1-204ENST00000462475 F2Z2F3 143 aa10.22□□□□□ -0.77
COL7A1-204ENST00000462475 UBE2L6O14933 153 aa10.22□□□□□ -0.77
COL7A1-204ENST00000462475 C15orf56Q8N910 161 aa10.22□□□□□ -0.77
COL7A1-204ENST00000462475 SPACA4Q8TDM5 124 aa10.22□□□□□ -0.77
COL7A1-204ENST00000462475 SMIM12Q96EX1 92 aa10.22□□□□□ -0.77
COL7A1-204ENST00000462475 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.21□□□□□ -0.77
COL7A1-204ENST00000462475 XKRY2A2RUG3 117 aa10.21□□□□□ -0.77
COL7A1-204ENST00000462475 IFNA1P01562 189 aa10.21□□□□□ -0.77
COL7A1-204ENST00000462475 NTF3P20783 257 aa10.21□□□□□ -0.77
COL7A1-204ENST00000462475 AMTP48728 403 aa10.21□□□□□ -0.77
COL7A1-204ENST00000462475 COTL1Q14019 142 aa10.21□□□□□ -0.77
COL7A1-204ENST00000462475 WDR73Q6P4I2 378 aa10.21□□□□□ -0.77
COL7A1-204ENST00000462475 Q6ZRU5 148 aa10.21□□□□□ -0.77
COL7A1-204ENST00000462475 LYPD6BQ8NI32 183 aa10.21□□□□□ -0.77
COL7A1-204ENST00000462475 CTRLP40313 264 aa10.2□□□□□ -0.78
COL7A1-204ENST00000462475 MEF2BQ02080 365 aaPredicted RBP10.2□□□□□ -0.78
COL7A1-204ENST00000462475 DPH3Q96FX2 82 aa10.2□□□□□ -0.78
COL7A1-204ENST00000462475 RNF185Q96GF1 192 aa10.2□□□□□ -0.78
COL7A1-204ENST00000462475 IGKV3OR2-268A0A0C4DH90 116 aa10.19□□□□□ -0.78
COL7A1-204ENST00000462475 GAGE12HA6NDE8 117 aa10.19□□□□□ -0.78
COL7A1-204ENST00000462475 PDE6DO43924 150 aa10.19□□□□□ -0.78
COL7A1-204ENST00000462475 TRAV26-2A0A0B4J265 109 aa10.18□□□□□ -0.78
COL7A1-204ENST00000462475 TEX46H3BTG2 121 aa10.18□□□□□ -0.78
COL7A1-204ENST00000462475 UQCC3Q6UW78 93 aa10.18□□□□□ -0.78
COL7A1-204ENST00000462475 PLAC8Q9NZF1 115 aa10.18□□□□□ -0.78
COL7A1-204ENST00000462475 LRP2P98164 4655 aa10.18□□□□□ -0.78
COL7A1-204ENST00000462475 PHOX2AO14813 284 aa10.17□□□□□ -0.78
COL7A1-204ENST00000462475 HIGD2BQ4VC39 106 aa10.17□□□□□ -0.78
COL7A1-204ENST00000462475 GATD1Q8NB37 220 aa10.17□□□□□ -0.78
COL7A1-204ENST00000462475 NUDT10Q8NFP7 164 aa10.17□□□□□ -0.78
COL7A1-204ENST00000462475 NUDT11Q96G61 164 aa10.17□□□□□ -0.78
COL7A1-204ENST00000462475 CNFNQ9BYD5 112 aa10.17□□□□□ -0.78
COL7A1-204ENST00000462475 BCL2P10415 239 aa10.16□□□□□ -0.78
COL7A1-204ENST00000462475 COX6A2Q02221 97 aa10.16□□□□□ -0.78
COL7A1-204ENST00000462475 TWIST1Q15672 202 aa10.16□□□□□ -0.78
COL7A1-204ENST00000462475 BIN3Q9NQY0 253 aa10.16□□□□□ -0.78
COL7A1-204ENST00000462475 RPL39LQ96EH5 51 aaKnown RBP10.15□□□□□ -0.78
COL7A1-204ENST00000462475 RNASE7Q9H1E1 156 aaKnown RBP10.15□□□□□ -0.78
COL7A1-204ENST00000462475 RPP21Q9H633 154 aaKnown RBP10.15□□□□□ -0.78
COL7A1-204ENST00000462475 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.14□□□□□ -0.79
COL7A1-204ENST00000462475 IGKV2-29A2NJV5 120 aaPredicted RBP10.14□□□□□ -0.79
COL7A1-204ENST00000462475 RPS10P46783 165 aaKnown RBP10.14□□□□□ -0.79
COL7A1-204ENST00000462475 CFAP161Q6P656 301 aa10.14□□□□□ -0.79
COL7A1-204ENST00000462475 PRSS3P2Q8NHM4 247 aa10.14□□□□□ -0.79
COL7A1-204ENST00000462475 CHCHD10Q8WYQ3 142 aaPredicted RBP10.14□□□□□ -0.79
COL7A1-204ENST00000462475 IGKV2-24A0A0C4DH68 120 aa10.13□□□□□ -0.79
COL7A1-204ENST00000462475 K7EN84 100 aa10.13□□□□□ -0.79
COL7A1-204ENST00000462475 NDUFS6O75380 124 aaKnown RBP10.13□□□□□ -0.79
COL7A1-204ENST00000462475 FOXA3P55318 350 aaPredicted RBP10.13□□□□□ -0.79
COL7A1-204ENST00000462475 MAJINQ3KP22 176 aa10.13□□□□□ -0.79
COL7A1-204ENST00000462475 AMMECR1LQ6DCA0 310 aa10.13□□□□□ -0.79
COL7A1-204ENST00000462475 RNASEKQ6P5S7 137 aaKnown RBP10.13□□□□□ -0.79
COL7A1-204ENST00000462475 C7orf33Q8WU49 177 aa10.13□□□□□ -0.79
COL7A1-204ENST00000462475 GTSF1Q8WW33 167 aa10.13□□□□□ -0.79
COL7A1-204ENST00000462475 FAM210AQ96ND0 272 aa10.13□□□□□ -0.79
COL7A1-204ENST00000462475 APCSP02743 223 aa10.12□□□□□ -0.79
COL7A1-204ENST00000462475 FGF6P10767 208 aa10.12□□□□□ -0.79
COL7A1-204ENST00000462475 PEA15Q15121 130 aa10.12□□□□□ -0.79
COL7A1-204ENST00000462475 GVQW2A0A096LPI5 108 aaPredicted RBP10.11□□□□□ -0.79
COL7A1-204ENST00000462475 NCR2O95944 276 aa10.11□□□□□ -0.79
COL7A1-204ENST00000462475 PRR3P79522 188 aaKnown RBP10.11□□□□□ -0.79
COL7A1-204ENST00000462475 FOXI1Q12951 378 aa10.11□□□□□ -0.79
COL7A1-204ENST00000462475 OCC1Q8TAD7 63 aa10.11□□□□□ -0.79
COL7A1-204ENST00000462475 SMDT1Q9H4I9 107 aa10.11□□□□□ -0.79
COL7A1-204ENST00000462475 A0A096LNI7 61 aa10.1□□□□□ -0.79
COL7A1-204ENST00000462475 TMEM218A2RU14 115 aa10.1□□□□□ -0.79
COL7A1-204ENST00000462475 SDHAF1A6NFY7 115 aa10.1□□□□□ -0.79
COL7A1-204ENST00000462475 SRSF3P84103 164 aaKnown RBP10.1□□□□□ -0.79
COL7A1-204ENST00000462475 STPG4Q8N801 248 aa10.1□□□□□ -0.79
COL7A1-204ENST00000462475 EIF5A2Q9GZV4 153 aaKnown RBP10.1□□□□□ -0.79
COL7A1-204ENST00000462475 RNF213Q63HN8 5207 aa10.09□□□□□ -0.79
COL7A1-204ENST00000462475 H7C423 109 aa10.09□□□□□ -0.79
COL7A1-204ENST00000462475 XCL1P47992 114 aa10.08□□□□□ -0.8
COL7A1-204ENST00000462475 SMIM15Q7Z3B0 74 aa10.08□□□□□ -0.8
COL7A1-204ENST00000462475 FAM231BA6NCW3 169 aa10.07□□□□□ -0.8
COL7A1-204ENST00000462475 GAS8-AS1O95177 125 aa10.07□□□□□ -0.8
COL7A1-204ENST00000462475 TAGLN2P37802 199 aaKnown RBP10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms