RNA–Protein interactions for RNA: ENST00000460333.5

VPS13D-202, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 4,910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-202ENST00000460333 HTN3P15516 51 aa4.72□□□□□ -1.65
VPS13D-202ENST00000460333 PDE6GP18545 87 aa4.72□□□□□ -1.65
VPS13D-202ENST00000460333 HIST2H2BCQ6DN03 193 aa4.72□□□□□ -1.65
VPS13D-202ENST00000460333 A0A1W2PPR1 153 aa4.72□□□□□ -1.65
VPS13D-202ENST00000460333 F5H768 121 aa4.72□□□□□ -1.65
VPS13D-202ENST00000460333 LINC00526Q96FQ7 95 aa4.72□□□□□ -1.65
VPS13D-202ENST00000460333 MRPS12O15235 138 aaKnown RBP4.72□□□□□ -1.65
VPS13D-202ENST00000460333 NDUFC1O43677 76 aa4.72□□□□□ -1.65
VPS13D-202ENST00000460333 INSL3P51460 131 aa4.72□□□□□ -1.65
VPS13D-202ENST00000460333 RPL18AQ02543 176 aaKnown RBP4.72□□□□□ -1.65
VPS13D-202ENST00000460333 BRK1Q8WUW1 75 aa4.72□□□□□ -1.65
VPS13D-202ENST00000460333 URB1-AS1Q96HZ7 61 aa4.72□□□□□ -1.65
VPS13D-202ENST00000460333 ABCA12Q86UK0 2595 aa4.71□□□□□ -1.65
VPS13D-202ENST00000460333 TRGV1A0A0A0MS02 117 aa4.71□□□□□ -1.65
VPS13D-202ENST00000460333 IGHV3-30P01768 117 aa4.71□□□□□ -1.66
VPS13D-202ENST00000460333 IGHV3-30-5P0DP03 117 aa4.71□□□□□ -1.66
VPS13D-202ENST00000460333 MRPS36P82909 103 aaKnown RBP4.71□□□□□ -1.66
VPS13D-202ENST00000460333 Q8N6K4 173 aa4.71□□□□□ -1.66
VPS13D-202ENST00000460333 DAND5Q8N907 189 aa4.71□□□□□ -1.66
VPS13D-202ENST00000460333 WFDC11Q8NEX6 87 aa4.71□□□□□ -1.66
VPS13D-202ENST00000460333 VPREB3Q9UKI3 123 aa4.71□□□□□ -1.66
VPS13D-202ENST00000460333 RS1O15537 224 aa4.71□□□□□ -1.66
VPS13D-202ENST00000460333 LINC00694P0DN24 101 aa4.71□□□□□ -1.66
VPS13D-202ENST00000460333 C5orf56Q8N8D9 126 aa4.71□□□□□ -1.66
VPS13D-202ENST00000460333 INAFM1C9JVW0 142 aa4.71□□□□□ -1.66
VPS13D-202ENST00000460333 SHISA2Q6UWI4 295 aa4.71□□□□□ -1.66
VPS13D-202ENST00000460333 DOPEY1Q5JWR5 2465 aa4.71□□□□□ -1.66
VPS13D-202ENST00000460333 IGHV7-4-1A0A0J9YVY3 117 aa4.7□□□□□ -1.66
VPS13D-202ENST00000460333 RNF185Q96GF1 192 aa4.7□□□□□ -1.66
VPS13D-202ENST00000460333 PRRC2AP48634 2157 aaKnown RBP4.7□□□□□ -1.66
VPS13D-202ENST00000460333 TNCP24821 2201 aa4.7□□□□□ -1.66
VPS13D-202ENST00000460333 GNRH2O43555 120 aa4.7□□□□□ -1.66
VPS13D-202ENST00000460333 TRIAP1O43715 76 aa4.7□□□□□ -1.66
VPS13D-202ENST00000460333 TIMM17BO60830 172 aa4.7□□□□□ -1.66
VPS13D-202ENST00000460333 IGHV3-30-3P0DP02 117 aa4.7□□□□□ -1.66
VPS13D-202ENST00000460333 SND1-IT1Q9HBX3 110 aa4.7□□□□□ -1.66
VPS13D-202ENST00000460333 BUB3O43684 328 aa4.7□□□□□ -1.66
VPS13D-202ENST00000460333 UBE2D3P61077 147 aa4.7□□□□□ -1.66
VPS13D-202ENST00000460333 UBE2D2P62837 147 aa4.7□□□□□ -1.66
VPS13D-202ENST00000460333 TMEM61Q8N0U2 210 aa4.7□□□□□ -1.66
VPS13D-202ENST00000460333 C20orf203Q8NBC4 194 aa4.7□□□□□ -1.66
VPS13D-202ENST00000460333 C20orf173Q96LM9 149 aa4.7□□□□□ -1.66
VPS13D-202ENST00000460333 MRPL36Q9P0J6 103 aaKnown RBP4.7□□□□□ -1.66
VPS13D-202ENST00000460333 DSCAML1Q8TD84 2053 aa4.7□□□□□ -1.66
VPS13D-202ENST00000460333 TMEM223A0PJW6 202 aa4.7□□□□□ -1.66
VPS13D-202ENST00000460333 G3V318 75 aa4.7□□□□□ -1.66
VPS13D-202ENST00000460333 DEFB112Q30KQ8 113 aa4.7□□□□□ -1.66
VPS13D-202ENST00000460333 MTORP42345 2549 aa4.7□□□□□ -1.66
VPS13D-202ENST00000460333 CLPSL1A2RUU4 121 aa4.69□□□□□ -1.66
VPS13D-202ENST00000460333 F8WEM9 126 aa4.69□□□□□ -1.66
VPS13D-202ENST00000460333 TMEM256-PLSCR3K7ERE1 68 aa4.69□□□□□ -1.66
VPS13D-202ENST00000460333 LST1O00453 97 aa4.69□□□□□ -1.66
VPS13D-202ENST00000460333 IGHV4-38-2P0DP08 117 aa4.69□□□□□ -1.66
VPS13D-202ENST00000460333 PFN2P35080 140 aa4.69□□□□□ -1.66
VPS13D-202ENST00000460333 FANCD2OSQ96PS1 177 aa4.69□□□□□ -1.66
VPS13D-202ENST00000460333 CSDC2Q9Y534 153 aaKnown RBP4.69□□□□□ -1.66
VPS13D-202ENST00000460333 C2CD3Q4AC94 2353 aa4.69□□□□□ -1.66
VPS13D-202ENST00000460333 A0A0J9YX75 114 aa4.69□□□□□ -1.66
VPS13D-202ENST00000460333 UBE2D1P51668 147 aa4.69□□□□□ -1.66
VPS13D-202ENST00000460333 RPL39P62891 51 aaKnown RBP4.69□□□□□ -1.66
VPS13D-202ENST00000460333 DAZ2Q13117 558 aaKnown RBP4.69□□□□□ -1.66
VPS13D-202ENST00000460333 DAZ4Q86SG3 579 aaKnown RBP4.69□□□□□ -1.66
VPS13D-202ENST00000460333 NFE4Q86UQ8 179 aa4.69□□□□□ -1.66
VPS13D-202ENST00000460333 RNF152Q8N8N0 203 aa4.69□□□□□ -1.66
VPS13D-202ENST00000460333 DAZ3Q9NR90 486 aaKnown RBP4.69□□□□□ -1.66
VPS13D-202ENST00000460333 VCANP13611 3396 aa4.69□□□□□ -1.66
VPS13D-202ENST00000460333 ELANEP08246 267 aa4.69□□□□□ -1.66
VPS13D-202ENST00000460333 CTSGP08311 255 aa4.69□□□□□ -1.66
VPS13D-202ENST00000460333 HIST2H2BDQ6DRA6 164 aa4.69□□□□□ -1.66
VPS13D-202ENST00000460333 POLQO75417 2590 aa4.69□□□□□ -1.66
VPS13D-202ENST00000460333 PRRC2CQ9Y520 2896 aaKnown RBP4.69□□□□□ -1.66
VPS13D-202ENST00000460333 SPINK13Q1W4C9 94 aa4.69□□□□□ -1.66
VPS13D-202ENST00000460333 KLK9Q9UKQ9 250 aa4.69□□□□□ -1.66
VPS13D-202ENST00000460333 A6NDX4 124 aa4.68□□□□□ -1.66
VPS13D-202ENST00000460333 LY6G6DO95868 133 aa4.68□□□□□ -1.66
VPS13D-202ENST00000460333 IGLV2-11P01706 119 aa4.68□□□□□ -1.66
VPS13D-202ENST00000460333 Q6JHZ5 121 aa4.68□□□□□ -1.66
VPS13D-202ENST00000460333 HHLA3Q9XRX5 114 aa4.68□□□□□ -1.66
VPS13D-202ENST00000460333 MRPL55Q7Z7F7 128 aaKnown RBP4.68□□□□□ -1.66
VPS13D-202ENST00000460333 ZNRF2Q8NHG8 242 aa4.68□□□□□ -1.66
VPS13D-202ENST00000460333 IL17DQ8TAD2 202 aa4.68□□□□□ -1.66
VPS13D-202ENST00000460333 TMEM263Q8WUH6 116 aaKnown RBP4.68□□□□□ -1.66
VPS13D-202ENST00000460333 CDIP1Q9H305 208 aa4.68□□□□□ -1.66
VPS13D-202ENST00000460333 MYO9AB2RTY4 2548 aa4.68□□□□□ -1.66
VPS13D-202ENST00000460333 TMEM89A2RUT3 159 aa4.68□□□□□ -1.66
VPS13D-202ENST00000460333 C9orf66Q5T8R8 295 aa4.68□□□□□ -1.66
VPS13D-202ENST00000460333 OPRPNQ99935 248 aaPredicted RBP4.68□□□□□ -1.66
VPS13D-202ENST00000460333 SMIM26A0A096LP01 95 aa4.68□□□□□ -1.66
VPS13D-202ENST00000460333 C20orf197Q8N268 126 aa4.68□□□□□ -1.66
VPS13D-202ENST00000460333 CNFNQ9BYD5 112 aa4.68□□□□□ -1.66
VPS13D-202ENST00000460333 ZNF80P51504 273 aaPredicted RBP4.67□□□□□ -1.66
VPS13D-202ENST00000460333 C1orf195Q5TG92 126 aa4.67□□□□□ -1.66
VPS13D-202ENST00000460333 AJUBAQ96IF1 538 aa4.67□□□□□ -1.66
VPS13D-202ENST00000460333 BBC3Q96PG8 261 aaPredicted RBP4.67□□□□□ -1.66
VPS13D-202ENST00000460333 UPK3BQ9BT76 320 aa4.67□□□□□ -1.66
VPS13D-202ENST00000460333 SERP1Q9Y6X1 66 aa4.67□□□□□ -1.66
VPS13D-202ENST00000460333 USP34Q70CQ2 3546 aa4.67□□□□□ -1.66
VPS13D-202ENST00000460333 PRAC2D3DTV9 90 aa4.67□□□□□ -1.66
VPS13D-202ENST00000460333 IGF1P05019 195 aa4.67□□□□□ -1.66
VPS13D-202ENST00000460333 CRIP1P50238 77 aa4.67□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 80.1 ms