RNA–Protein interactions for RNA: ENST00000458707.1

VPS50-208, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 1,898 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-208ENST00000458707 SFTA2Q6UW10 78 aa6.32□□□□□ -1.4
VPS50-208ENST00000458707 LINC01600Q96MT4 127 aa6.32□□□□□ -1.4
VPS50-208ENST00000458707 LINC00527Q9UJ94 153 aa6.32□□□□□ -1.4
VPS50-208ENST00000458707 A0A0B4J2C4 111 aa6.32□□□□□ -1.4
VPS50-208ENST00000458707 TMEM223A0PJW6 202 aa6.32□□□□□ -1.4
VPS50-208ENST00000458707 M0R2P5 195 aa6.32□□□□□ -1.4
VPS50-208ENST00000458707 LEPROTO15243 131 aa6.32□□□□□ -1.4
VPS50-208ENST00000458707 IGHG2P01859 326 aa6.32□□□□□ -1.4
VPS50-208ENST00000458707 MALP21145 153 aa6.32□□□□□ -1.4
VPS50-208ENST00000458707 RHOHQ15669 191 aa6.32□□□□□ -1.4
VPS50-208ENST00000458707 ANKRD29Q8N6D5 301 aa6.32□□□□□ -1.4
VPS50-208ENST00000458707 C9orf85Q96MD7 179 aa6.32□□□□□ -1.4
VPS50-208ENST00000458707 RHPN1-AS1Q9BWJ2 59 aa6.32□□□□□ -1.4
VPS50-208ENST00000458707 JPT2Q9H910 190 aa6.32□□□□□ -1.4
VPS50-208ENST00000458707 FBN3Q75N90 2809 aa6.32□□□□□ -1.4
VPS50-208ENST00000458707 NOTCH2Q04721 2471 aa6.32□□□□□ -1.4
VPS50-208ENST00000458707 A0A0J9YX75 114 aa6.31□□□□□ -1.4
VPS50-208ENST00000458707 TINCRA0A1B0GVN0 87 aa6.31□□□□□ -1.4
VPS50-208ENST00000458707 EIF4EBP3O60516 100 aaPredicted RBP6.31□□□□□ -1.4
VPS50-208ENST00000458707 IGHV3-33P01772 117 aa6.31□□□□□ -1.4
VPS50-208ENST00000458707 P0DMU3 169 aa6.31□□□□□ -1.4
VPS50-208ENST00000458707 FAM231AP0DMU4 169 aa6.31□□□□□ -1.4
VPS50-208ENST00000458707 FAM231CP0DMU5 169 aa6.31□□□□□ -1.4
VPS50-208ENST00000458707 LGALS3P17931 250 aaKnown RBP6.31□□□□□ -1.4
VPS50-208ENST00000458707 TMEM263Q8WUH6 116 aaKnown RBP6.31□□□□□ -1.4
VPS50-208ENST00000458707 ODF3Q96PU9 254 aa6.31□□□□□ -1.4
VPS50-208ENST00000458707 BPESC1Q9GZL8 116 aa6.31□□□□□ -1.4
VPS50-208ENST00000458707 FBN2P35556 2912 aa6.31□□□□□ -1.4
VPS50-208ENST00000458707 ITPR3Q14573 2671 aa6.31□□□□□ -1.4
VPS50-208ENST00000458707 ZFHX3Q15911 3703 aa6.31□□□□□ -1.4
VPS50-208ENST00000458707 NACAE9PAV3 2078 aa6.31□□□□□ -1.4
VPS50-208ENST00000458707 A0A087WWL8 130 aa6.3□□□□□ -1.4
VPS50-208ENST00000458707 TRAV4A0A0B4J268 109 aa6.3□□□□□ -1.4
VPS50-208ENST00000458707 K7EMT4 169 aa6.3□□□□□ -1.4
VPS50-208ENST00000458707 M0QY20 66 aa6.3□□□□□ -1.4
VPS50-208ENST00000458707 RPL11P62913 178 aaKnown RBP6.3□□□□□ -1.4
VPS50-208ENST00000458707 RNF152Q8N8N0 203 aa6.3□□□□□ -1.4
VPS50-208ENST00000458707 DCANP1Q8TF63 244 aa6.3□□□□□ -1.4
VPS50-208ENST00000458707 DAZ1Q9NQZ3 744 aaKnown RBP6.3□□□□□ -1.4
VPS50-208ENST00000458707 CREBBPQ92793 2442 aa6.3□□□□□ -1.4
VPS50-208ENST00000458707 IGHV3-16A0A0C4DH30 117 aa6.3□□□□□ -1.4
VPS50-208ENST00000458707 F5H697 171 aa6.3□□□□□ -1.4
VPS50-208ENST00000458707 SLC25A20O43772 301 aa6.3□□□□□ -1.4
VPS50-208ENST00000458707 IGLV1-40P01703 118 aa6.3□□□□□ -1.4
VPS50-208ENST00000458707 KLRB1Q12918 225 aa6.3□□□□□ -1.4
VPS50-208ENST00000458707 COL6A6A6NMZ7 2263 aa6.3□□□□□ -1.4
VPS50-208ENST00000458707 IGHV3-11P01762 117 aa6.29□□□□□ -1.4
VPS50-208ENST00000458707 SCGB1C2P0DMR2 95 aa6.29□□□□□ -1.4
VPS50-208ENST00000458707 HERVK_113P63121 156 aa6.29□□□□□ -1.4
VPS50-208ENST00000458707 C3orf22Q8N5N4 141 aa6.29□□□□□ -1.4
VPS50-208ENST00000458707 LINC00526Q96FQ7 95 aa6.29□□□□□ -1.4
VPS50-208ENST00000458707 HIVEP3Q5T1R4 2406 aa6.29□□□□□ -1.4
VPS50-208ENST00000458707 CFAP46Q8IYW2 2715 aa6.28□□□□□ -1.4
VPS50-208ENST00000458707 TRAV16A0A0A6YYK6 109 aaPredicted RBP6.28□□□□□ -1.4
VPS50-208ENST00000458707 TRAV12-3A0A0B4J271 114 aa6.28□□□□□ -1.4
VPS50-208ENST00000458707 UQCRQO14949 82 aa6.28□□□□□ -1.4
VPS50-208ENST00000458707 ZNF22P17026 224 aaPredicted RBP6.28□□□□□ -1.4
VPS50-208ENST00000458707 TRPT1Q86TN4 253 aaKnown RBP6.28□□□□□ -1.4
VPS50-208ENST00000458707 C20orf203Q8NBC4 194 aa6.28□□□□□ -1.4
VPS50-208ENST00000458707 V9GYY9 64 aa6.28□□□□□ -1.4
VPS50-208ENST00000458707 RELNP78509 3460 aa6.28□□□□□ -1.4
VPS50-208ENST00000458707 IGKV3-7A0A075B6H7 116 aa6.28□□□□□ -1.4
VPS50-208ENST00000458707 A6NDX4 124 aa6.28□□□□□ -1.4
VPS50-208ENST00000458707 CFHR3Q02985 330 aa6.28□□□□□ -1.4
VPS50-208ENST00000458707 MUSTN1Q8IVN3 82 aa6.28□□□□□ -1.4
VPS50-208ENST00000458707 ZNF256Q9Y2P7 627 aaPredicted RBP6.28□□□□□ -1.4
VPS50-208ENST00000458707 SVEP1Q4LDE5 3571 aa6.27□□□□□ -1.41
VPS50-208ENST00000458707 TRBV30A0A0K0K1B3 111 aa6.27□□□□□ -1.41
VPS50-208ENST00000458707 I3L3M4 83 aa6.27□□□□□ -1.41
VPS50-208ENST00000458707 ATP5G1P05496 136 aa6.27□□□□□ -1.41
VPS50-208ENST00000458707 EDN2P20800 178 aa6.27□□□□□ -1.41
VPS50-208ENST00000458707 ZNF56Q15929 161 aa6.27□□□□□ -1.41
VPS50-208ENST00000458707 FAM74A4Q5TZK3 123 aa6.27□□□□□ -1.41
VPS50-208ENST00000458707 Q5XG85 94 aa6.27□□□□□ -1.41
VPS50-208ENST00000458707 DEFB104AQ8WTQ1 72 aa6.27□□□□□ -1.41
VPS50-208ENST00000458707 OPRPNQ99935 248 aaPredicted RBP6.27□□□□□ -1.41
VPS50-208ENST00000458707 PRORYQ9H606 182 aa6.27□□□□□ -1.41
VPS50-208ENST00000458707 EDA2RQ9HAV5 297 aa6.27□□□□□ -1.41
VPS50-208ENST00000458707 ZNF580Q9UK33 172 aa6.27□□□□□ -1.41
VPS50-208ENST00000458707 NBASA2RRP1 2371 aa6.26□□□□□ -1.41
VPS50-208ENST00000458707 IGLV4-3A0A075B6K6 122 aa6.26□□□□□ -1.41
VPS50-208ENST00000458707 IGHV3OR16-10A0A075B7F0 116 aa6.26□□□□□ -1.41
VPS50-208ENST00000458707 A0A0J9YXY3 114 aa6.26□□□□□ -1.41
VPS50-208ENST00000458707 TRBV7-7A0A0K0K1E9 115 aa6.26□□□□□ -1.41
VPS50-208ENST00000458707 RPL13AP40429 203 aaKnown RBP6.26□□□□□ -1.41
VPS50-208ENST00000458707 ATXN8Q156A1 80 aa6.26□□□□□ -1.41
VPS50-208ENST00000458707 BRD3OSQ6XYD6 125 aa6.26□□□□□ -1.41
VPS50-208ENST00000458707 IMUPQ9GZP8 106 aa6.26□□□□□ -1.41
VPS50-208ENST00000458707 PYGO1Q9Y3Y4 419 aa6.26□□□□□ -1.41
VPS50-208ENST00000458707 DOPEY2Q9Y3R5 2298 aa6.26□□□□□ -1.41
VPS50-208ENST00000458707 TRAV2A0A0B4J234 112 aa6.26□□□□□ -1.41
VPS50-208ENST00000458707 LINC01620Q4KN68 170 aa6.26□□□□□ -1.41
VPS50-208ENST00000458707 Q8N1Y9 231 aa6.26□□□□□ -1.41
VPS50-208ENST00000458707 LITAFQ99732 161 aa6.26□□□□□ -1.41
VPS50-208ENST00000458707 IGHV1OR15-1A0A075B7D0 117 aa6.25□□□□□ -1.41
VPS50-208ENST00000458707 A0A0J9YXV3 536 aa6.25□□□□□ -1.41
VPS50-208ENST00000458707 H3BUX3 64 aa6.25□□□□□ -1.41
VPS50-208ENST00000458707 BLCAPP62952 87 aa6.25□□□□□ -1.41
VPS50-208ENST00000458707 MRPS36P82909 103 aaKnown RBP6.25□□□□□ -1.41
VPS50-208ENST00000458707 C6orf226Q5I0X4 101 aa6.25□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 82.1 ms