RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 CD28P10747 220 aa8.28□□□□□ -1.08
USP4-205ENST00000431357 MRPS36P82909 103 aaKnown RBP8.28□□□□□ -1.08
USP4-205ENST00000431357 ZNF415Q09FC8 603 aa8.28□□□□□ -1.08
USP4-205ENST00000431357 MRPL23Q16540 153 aaKnown RBP8.28□□□□□ -1.08
USP4-205ENST00000431357 ASH1LQ9NR48 2969 aaKnown RBP8.28□□□□□ -1.08
USP4-205ENST00000431357 KNCNA6PVL3 124 aa8.27□□□□□ -1.08
USP4-205ENST00000431357 H3BMM0 161 aa8.27□□□□□ -1.08
USP4-205ENST00000431357 RBMY1A1P0DJD3 496 aaKnown RBP8.27□□□□□ -1.08
USP4-205ENST00000431357 RBMY1CP0DJD4 496 aa8.27□□□□□ -1.08
USP4-205ENST00000431357 DEFB131AP59861 70 aa8.27□□□□□ -1.08
USP4-205ENST00000431357 RBMY1FQ15415 496 aaKnown RBP8.27□□□□□ -1.08
USP4-205ENST00000431357 SFTA2Q6UW10 78 aa8.27□□□□□ -1.08
USP4-205ENST00000431357 PEMTQ9UBM1 199 aa8.27□□□□□ -1.08
USP4-205ENST00000431357 IGHV3-33P01772 117 aa8.27□□□□□ -1.09
USP4-205ENST00000431357 RPS28P62857 69 aaKnown RBP8.27□□□□□ -1.09
USP4-205ENST00000431357 OR13C6PQ8NH95 151 aa8.27□□□□□ -1.09
USP4-205ENST00000431357 TMEM263Q8WUH6 116 aaKnown RBP8.27□□□□□ -1.09
USP4-205ENST00000431357 DUX3Q96PT4 197 aa8.27□□□□□ -1.09
USP4-205ENST00000431357 LINC00467Q9BRT7 94 aa8.27□□□□□ -1.09
USP4-205ENST00000431357 A0A0J9YXY3 114 aa8.26□□□□□ -1.09
USP4-205ENST00000431357 MUSTN1Q8IVN3 82 aa8.26□□□□□ -1.09
USP4-205ENST00000431357 TIMM21Q9BVV7 248 aa8.26□□□□□ -1.09
USP4-205ENST00000431357 IGHV3-30-3P0DP02 117 aa8.26□□□□□ -1.09
USP4-205ENST00000431357 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP8.26□□□□□ -1.095e-7■■■■□ 22.8
USP4-205ENST00000431357 IGHV1-58A0A0C4DH39 117 aa8.25□□□□□ -1.09
USP4-205ENST00000431357 TINCRA0A1B0GVN0 87 aa8.25□□□□□ -1.09
USP4-205ENST00000431357 J3KT08 172 aa8.25□□□□□ -1.09
USP4-205ENST00000431357 Q8N2B8 174 aa8.25□□□□□ -1.09
USP4-205ENST00000431357 MRAPQ8TCY5 172 aa8.25□□□□□ -1.09
USP4-205ENST00000431357 CARD19Q96LW7 228 aa8.25□□□□□ -1.09
USP4-205ENST00000431357 IGHV3-64A0A075B6Q5 118 aa8.24□□□□□ -1.09
USP4-205ENST00000431357 HTN1P15515 57 aa8.24□□□□□ -1.09
USP4-205ENST00000431357 SLURP1P55000 103 aa8.24□□□□□ -1.09
USP4-205ENST00000431357 IGHV3-73A0A0B4J1V6 119 aa8.24□□□□□ -1.09
USP4-205ENST00000431357 FAM104AQ969W3 186 aa8.24□□□□□ -1.09
USP4-205ENST00000431357 RBMY1BA6NDE4 496 aaKnown RBP8.23□□□□□ -1.09
USP4-205ENST00000431357 RBMY1EA6NEQ0 496 aaKnown RBP8.23□□□□□ -1.09
USP4-205ENST00000431357 RBMY1DP0C7P1 496 aaKnown RBP8.23□□□□□ -1.09
USP4-205ENST00000431357 IGHV4-31P0DP07 118 aa8.23□□□□□ -1.09
USP4-205ENST00000431357 PROK1P58294 105 aa8.23□□□□□ -1.09
USP4-205ENST00000431357 CHCHD7Q9BUK0 85 aa8.23□□□□□ -1.09
USP4-205ENST00000431357 BEX4Q9NWD9 120 aaPredicted RBP8.23□□□□□ -1.09
USP4-205ENST00000431357 SPTBN4Q9H254 2564 aa8.23□□□□□ -1.09
USP4-205ENST00000431357 IGHV3-53P01767 116 aa8.23□□□□□ -1.09
USP4-205ENST00000431357 BEAN1Q3B7T3 259 aa8.23□□□□□ -1.09
USP4-205ENST00000431357 C4orf3Q8WVX3 66 aa8.23□□□□□ -1.09
USP4-205ENST00000431357 UBE2D4Q9Y2X8 147 aa8.23□□□□□ -1.09
USP4-205ENST00000431357 NCOR2Q9Y618 2525 aa8.23□□□□□ -1.09
USP4-205ENST00000431357 ZFHX3Q15911 3703 aa8.22□□□□□ -1.09
USP4-205ENST00000431357 SLC25A20O43772 301 aa8.22□□□□□ -1.09
USP4-205ENST00000431357 EIF4EBP3O60516 100 aaPredicted RBP8.22□□□□□ -1.09
USP4-205ENST00000431357 ATXN8Q156A1 80 aa8.22□□□□□ -1.09
USP4-205ENST00000431357 TMEM61Q8N0U2 210 aa8.22□□□□□ -1.09
USP4-205ENST00000431357 LINC01587Q99440 93 aa8.22□□□□□ -1.09
USP4-205ENST00000431357 MAP6D1Q9H9H5 199 aa8.22□□□□□ -1.09
USP4-205ENST00000431357 TRBV30A0A0K0K1B3 111 aa8.21□□□□□ -1.09
USP4-205ENST00000431357 F8WDY8 70 aa8.21□□□□□ -1.09
USP4-205ENST00000431357 RS1O15537 224 aa8.21□□□□□ -1.09
USP4-205ENST00000431357 INSP01308 110 aa8.21□□□□□ -1.09
USP4-205ENST00000431357 MAPK1IP1LQ8NDC0 245 aa8.21□□□□□ -1.09
USP4-205ENST00000431357 DYNLRB2Q8TF09 96 aa8.21□□□□□ -1.09
USP4-205ENST00000431357 VSIG2Q96IQ7 327 aa8.21□□□□□ -1.09
USP4-205ENST00000431357 LINC01600Q96MT4 127 aa8.21□□□□□ -1.09
USP4-205ENST00000431357 LITAFQ99732 161 aa8.21□□□□□ -1.09
USP4-205ENST00000431357 NDUFA12Q9UI09 145 aa8.21□□□□□ -1.09
USP4-205ENST00000431357 Q1RN00 199 aa8.21□□□□□ -1.1
USP4-205ENST00000431357 DEFB136Q30KP8 78 aa8.21□□□□□ -1.1
USP4-205ENST00000431357 ANKRD29Q8N6D5 301 aa8.21□□□□□ -1.1
USP4-205ENST00000431357 C11orf72Q8NBR9 251 aa8.21□□□□□ -1.1
USP4-205ENST00000431357 CHD8Q9HCK8 2581 aa8.2□□□□□ -1.1
USP4-205ENST00000431357 TIMM17BO60830 172 aa8.2□□□□□ -1.1
USP4-205ENST00000431357 CEMP1Q6PRD7 247 aaPredicted RBP8.2□□□□□ -1.1
USP4-205ENST00000431357 Q6ZSN1 163 aa8.2□□□□□ -1.1
USP4-205ENST00000431357 C18orf65Q6ZTR6 163 aa8.2□□□□□ -1.1
USP4-205ENST00000431357 PIEZO1Q92508 2521 aa8.2□□□□□ -1.1
USP4-205ENST00000431357 DOPEY1Q5JWR5 2465 aa8.2□□□□□ -1.1
USP4-205ENST00000431357 TRAV8-3A0A0A6YYJ7 113 aa8.2□□□□□ -1.1
USP4-205ENST00000431357 C9JAW5 83 aa8.2□□□□□ -1.1
USP4-205ENST00000431357 TIRAPP58753 221 aa8.2□□□□□ -1.1
USP4-205ENST00000431357 MIAQ16674 131 aa8.2□□□□□ -1.1
USP4-205ENST00000431357 ITPR1Q14643 2758 aa8.2□□□□□ -1.1
USP4-205ENST00000431357 DOPEY2Q9Y3R5 2298 aa8.19□□□□□ -1.1
USP4-205ENST00000431357 TRAV4A0A0B4J268 109 aa8.19□□□□□ -1.1
USP4-205ENST00000431357 H7C2G1 150 aa8.19□□□□□ -1.1
USP4-205ENST00000431357 DEFB114Q30KQ6 69 aa8.19□□□□□ -1.1
USP4-205ENST00000431357 CSPG4Q6UVK1 2322 aa8.19□□□□□ -1.1
USP4-205ENST00000431357 IGKV2D-29A0A075B6S2 120 aaPredicted RBP8.18□□□□□ -1.1
USP4-205ENST00000431357 IGKV2-29A2NJV5 120 aaPredicted RBP8.18□□□□□ -1.1
USP4-205ENST00000431357 PRSS2P07478 247 aa8.18□□□□□ -1.1
USP4-205ENST00000431357 LINC01620Q4KN68 170 aa8.18□□□□□ -1.1
USP4-205ENST00000431357 IGLV5-45A0A087WSX0 123 aa8.18□□□□□ -1.1
USP4-205ENST00000431357 ADARB2-AS1A8MUL3 147 aa8.18□□□□□ -1.1
USP4-205ENST00000431357 PRM2P04554 102 aa8.17□□□□□ -1.1
USP4-205ENST00000431357 COX6CP09669 75 aa8.17□□□□□ -1.1
USP4-205ENST00000431357 RNASE13Q5GAN3 156 aaKnown RBP8.17□□□□□ -1.1
USP4-205ENST00000431357 FAM19A5Q7Z5A7 132 aaPredicted RBP8.17□□□□□ -1.1
USP4-205ENST00000431357 TMEM86BQ8N661 226 aa8.17□□□□□ -1.1
USP4-205ENST00000431357 SPG11Q96JI7 2443 aa8.17□□□□□ -1.1
USP4-205ENST00000431357 TRBV10-2A0A0K0K1G8 114 aa8.17□□□□□ -1.1
USP4-205ENST00000431357 LINC00694P0DN24 101 aa8.17□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 71.4 ms