RNA–Protein interactions for RNA: ENST00000430711.5

COL28A1-202, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 5

Gene COL28A1, Length 2,323 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-202ENST00000430711 IGHV4OR15-8A0A075B7B6 117 aa5.27□□□□□ -1.57
COL28A1-202ENST00000430711 A0A087WW49 117 aa5.27□□□□□ -1.57
COL28A1-202ENST00000430711 H7C2G1 150 aa5.27□□□□□ -1.57
COL28A1-202ENST00000430711 ATP5J2P56134 94 aa5.27□□□□□ -1.57
COL28A1-202ENST00000430711 SRSF9Q13242 221 aaKnown RBP eCLIP5.27□□□□□ -1.57
COL28A1-202ENST00000430711 TRAV8-3A0A0A6YYJ7 113 aa5.26□□□□□ -1.57
COL28A1-202ENST00000430711 A0A0J9YX75 114 aa5.26□□□□□ -1.57
COL28A1-202ENST00000430711 UBE2D3P61077 147 aa5.26□□□□□ -1.57
COL28A1-202ENST00000430711 UBE2D2P62837 147 aa5.26□□□□□ -1.57
COL28A1-202ENST00000430711 SCGB2A2Q13296 93 aa5.26□□□□□ -1.57
COL28A1-202ENST00000430711 ZNF876PQ49A33 203 aa5.26□□□□□ -1.57
COL28A1-202ENST00000430711 TRPT1Q86TN4 253 aaKnown RBP5.26□□□□□ -1.57
COL28A1-202ENST00000430711 C10orf126Q8N4M7 172 aa5.26□□□□□ -1.57
COL28A1-202ENST00000430711 RAX2Q96IS3 184 aa5.26□□□□□ -1.57
COL28A1-202ENST00000430711 F8W1H4 67 aa5.26□□□□□ -1.57
COL28A1-202ENST00000430711 LGALS9O00182 355 aa5.26□□□□□ -1.57
COL28A1-202ENST00000430711 MSMBP08118 114 aa5.26□□□□□ -1.57
COL28A1-202ENST00000430711 PMVKQ15126 192 aa5.26□□□□□ -1.57
COL28A1-202ENST00000430711 CR1P17927 2039 aa5.26□□□□□ -1.57
COL28A1-202ENST00000430711 TRBV27A0A0K0K1C4 114 aa5.25□□□□□ -1.57
COL28A1-202ENST00000430711 LINC01619G3V211 115 aa5.25□□□□□ -1.57
COL28A1-202ENST00000430711 MT-ATP8P03928 68 aa5.25□□□□□ -1.57
COL28A1-202ENST00000430711 ZNF22P17026 224 aaPredicted RBP5.25□□□□□ -1.57
COL28A1-202ENST00000430711 NPC2P61916 151 aa5.25□□□□□ -1.57
COL28A1-202ENST00000430711 SYT8Q8NBV8 401 aa5.25□□□□□ -1.57
COL28A1-202ENST00000430711 USMG5Q96IX5 58 aa5.25□□□□□ -1.57
COL28A1-202ENST00000430711 SIGMAR1Q99720 223 aa5.25□□□□□ -1.57
COL28A1-202ENST00000430711 SPATA25Q9BR10 227 aa5.25□□□□□ -1.57
COL28A1-202ENST00000430711 PIMREGQ9BSJ6 248 aa5.25□□□□□ -1.57
COL28A1-202ENST00000430711 IGLV4-3A0A075B6K6 122 aa5.25□□□□□ -1.57
COL28A1-202ENST00000430711 IGHV3-38A0A0C4DH36 116 aa5.25□□□□□ -1.57
COL28A1-202ENST00000430711 A4D1N5 150 aa5.25□□□□□ -1.57
COL28A1-202ENST00000430711 J3QQQ9 107 aa5.25□□□□□ -1.57
COL28A1-202ENST00000430711 K7EQG2 157 aa5.25□□□□□ -1.57
COL28A1-202ENST00000430711 MED14OSP0DP75 135 aa5.25□□□□□ -1.57
COL28A1-202ENST00000430711 SLURP1P55000 103 aa5.25□□□□□ -1.57
COL28A1-202ENST00000430711 XGP55808 180 aa5.25□□□□□ -1.57
COL28A1-202ENST00000430711 FOXI1Q12951 378 aa5.24□□□□□ -1.57
COL28A1-202ENST00000430711 ADAMTSL4-AS1Q5T5F5 129 aa5.24□□□□□ -1.57
COL28A1-202ENST00000430711 SLC25A29Q8N8R3 303 aa5.24□□□□□ -1.57
COL28A1-202ENST00000430711 TRAV2A0A0B4J234 112 aa5.24□□□□□ -1.57
COL28A1-202ENST00000430711 TMEM223A0PJW6 202 aa5.24□□□□□ -1.57
COL28A1-202ENST00000430711 NDUFS8O00217 210 aa5.24□□□□□ -1.57
COL28A1-202ENST00000430711 VCYO14598 125 aa5.24□□□□□ -1.57
COL28A1-202ENST00000430711 BRI3O95415 125 aa5.24□□□□□ -1.57
COL28A1-202ENST00000430711 KRTAP10-9P60411 292 aa5.24□□□□□ -1.57
COL28A1-202ENST00000430711 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP5.24□□□□□ -1.57
COL28A1-202ENST00000430711 BEX4Q9NWD9 120 aaPredicted RBP5.24□□□□□ -1.57
COL28A1-202ENST00000430711 IGHV1OR15-1A0A075B7D0 117 aa5.23□□□□□ -1.57
COL28A1-202ENST00000430711 A0A096LNT2 108 aa5.23□□□□□ -1.57
COL28A1-202ENST00000430711 HOXD3P31249 432 aaPredicted RBP5.23□□□□□ -1.57
COL28A1-202ENST00000430711 MUSTN1Q8IVN3 82 aa5.23□□□□□ -1.57
COL28A1-202ENST00000430711 DAND5Q8N907 189 aa5.23□□□□□ -1.57
COL28A1-202ENST00000430711 ATP6V0BQ99437 205 aa5.23□□□□□ -1.57
COL28A1-202ENST00000430711 LITAFQ99732 161 aa5.23□□□□□ -1.57
COL28A1-202ENST00000430711 SPXQ9BT56 116 aa5.23□□□□□ -1.57
COL28A1-202ENST00000430711 C1QTNF4Q9BXJ3 329 aa5.23□□□□□ -1.57
COL28A1-202ENST00000430711 NBEAL2Q6ZNJ1 2754 aa5.23□□□□□ -1.57
COL28A1-202ENST00000430711 CCDC168Q8NDH2 2452 aa5.23□□□□□ -1.57
COL28A1-202ENST00000430711 IGKV2D-29A0A075B6S2 120 aaPredicted RBP5.23□□□□□ -1.57
COL28A1-202ENST00000430711 IGKV2-29A2NJV5 120 aaPredicted RBP5.23□□□□□ -1.57
COL28A1-202ENST00000430711 NDUFA7O95182 113 aa5.23□□□□□ -1.57
COL28A1-202ENST00000430711 ANKRD29Q8N6D5 301 aa5.23□□□□□ -1.57
COL28A1-202ENST00000430711 C20orf203Q8NBC4 194 aa5.23□□□□□ -1.57
COL28A1-202ENST00000430711 DLX4Q92988 240 aaPredicted RBP5.23□□□□□ -1.57
COL28A1-202ENST00000430711 TIMM17AQ99595 171 aa5.23□□□□□ -1.57
COL28A1-202ENST00000430711 VWFP04275 2813 aa5.22□□□□□ -1.57
COL28A1-202ENST00000430711 TRBV6-5A0A0K0K1A5 114 aa5.22□□□□□ -1.57
COL28A1-202ENST00000430711 RHODO00212 210 aa5.22□□□□□ -1.57
COL28A1-202ENST00000430711 GATA3P23771 443 aa5.22□□□□□ -1.57
COL28A1-202ENST00000430711 TMEM263Q8WUH6 116 aaKnown RBP5.22□□□□□ -1.57
COL28A1-202ENST00000430711 MTORP42345 2549 aa5.22□□□□□ -1.57
COL28A1-202ENST00000430711 FLNAP21333 2647 aaKnown RBP5.22□□□□□ -1.57
COL28A1-202ENST00000430711 H3BUA1 57 aa5.22□□□□□ -1.57
COL28A1-202ENST00000430711 CD28P10747 220 aa5.22□□□□□ -1.57
COL28A1-202ENST00000430711 RPL32P62910 135 aaKnown RBP5.22□□□□□ -1.57
COL28A1-202ENST00000430711 NSUN5P1Q3KNT7 163 aa5.22□□□□□ -1.57
COL28A1-202ENST00000430711 CLUHP3Q96NS8 147 aa5.22□□□□□ -1.57
COL28A1-202ENST00000430711 A0A0J9YXY3 114 aa5.21□□□□□ -1.58
COL28A1-202ENST00000430711 K7EMT4 169 aa5.21□□□□□ -1.58
COL28A1-202ENST00000430711 IGHV3-33P01772 117 aa5.21□□□□□ -1.58
COL28A1-202ENST00000430711 SPINK8P0C7L1 97 aa5.21□□□□□ -1.58
COL28A1-202ENST00000430711 DEFB131AP59861 70 aa5.21□□□□□ -1.58
COL28A1-202ENST00000430711 TCTEX1D4Q5JR98 221 aa5.21□□□□□ -1.58
COL28A1-202ENST00000430711 KRTAP19-1Q8IUB9 90 aa5.21□□□□□ -1.58
COL28A1-202ENST00000430711 ZNF702PQ9H963 129 aa5.21□□□□□ -1.58
COL28A1-202ENST00000430711 ACANP16112 2415 aa5.2□□□□□ -1.58
COL28A1-202ENST00000430711 TRBV7-9A0A0J9YWB2 115 aa5.2□□□□□ -1.58
COL28A1-202ENST00000430711 IGHV3-30-3P0DP02 117 aa5.2□□□□□ -1.58
COL28A1-202ENST00000430711 LGALS3P17931 250 aaKnown RBP5.2□□□□□ -1.58
COL28A1-202ENST00000430711 Q6ZUT4 128 aa5.2□□□□□ -1.58
COL28A1-202ENST00000430711 TMEM141Q96I45 108 aa5.2□□□□□ -1.58
COL28A1-202ENST00000430711 LINC00467Q9BRT7 94 aa5.2□□□□□ -1.58
COL28A1-202ENST00000430711 C9JAW5 83 aa5.2□□□□□ -1.58
COL28A1-202ENST00000430711 ID1P41134 155 aa5.2□□□□□ -1.58
COL28A1-202ENST00000430711 TMEM61Q8N0U2 210 aa5.2□□□□□ -1.58
COL28A1-202ENST00000430711 C11orf44Q8N8P7 122 aa5.2□□□□□ -1.58
COL28A1-202ENST00000430711 CHCHD7Q9BUK0 85 aa5.2□□□□□ -1.58
COL28A1-202ENST00000430711 ANK3Q12955 4377 aaKnown RBP5.2□□□□□ -1.58
COL28A1-202ENST00000430711 LEPROTO15243 131 aa5.19□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 72.8 ms