RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 KRTAP24-1Q3LI83 254 aa6.06□□□□□ -1.44
USP54-203ENST00000418501 GTSF1LQ9H1H1 148 aa6.06□□□□□ -1.44
USP54-203ENST00000418501 HHLA3Q9XRX5 114 aa6.06□□□□□ -1.44
USP54-203ENST00000418501 ZNF575Q86XF7 245 aa6.06□□□□□ -1.44
USP54-203ENST00000418501 TAL2Q16559 108 aa6.06□□□□□ -1.44
USP54-203ENST00000418501 NEGR1Q7Z3B1 354 aa6.06□□□□□ -1.44
USP54-203ENST00000418501 IL17DQ8TAD2 202 aa6.06□□□□□ -1.44
USP54-203ENST00000418501 CHCHD5Q9BSY4 110 aa6.06□□□□□ -1.44
USP54-203ENST00000418501 CST9LQ9H4G1 147 aa6.06□□□□□ -1.44
USP54-203ENST00000418501 TSHBP01222 138 aa6.06□□□□□ -1.44
USP54-203ENST00000418501 CIRBPQ14011 172 aaKnown RBP6.06□□□□□ -1.44
USP54-203ENST00000418501 DEFB135Q30KP9 77 aa6.06□□□□□ -1.44
USP54-203ENST00000418501 PHLDA1Q8WV24 401 aaPredicted RBP6.06□□□□□ -1.44
USP54-203ENST00000418501 HERVK_113P63121 156 aa6.05□□□□□ -1.44
USP54-203ENST00000418501 MRPL23Q16540 153 aaKnown RBP6.05□□□□□ -1.44
USP54-203ENST00000418501 WFDC10AQ9H1F0 79 aa6.05□□□□□ -1.44
USP54-203ENST00000418501 C11orf86A6NJI1 115 aa6.05□□□□□ -1.44
USP54-203ENST00000418501 MRPS36P82909 103 aaKnown RBP6.05□□□□□ -1.44
USP54-203ENST00000418501 ATP6V0E2Q8NHE4 81 aa6.05□□□□□ -1.44
USP54-203ENST00000418501 RNF183Q96D59 192 aa6.05□□□□□ -1.44
USP54-203ENST00000418501 ZNF479Q96JC4 524 aa6.05□□□□□ -1.44
USP54-203ENST00000418501 DKK2Q9UBU2 259 aa6.05□□□□□ -1.44
USP54-203ENST00000418501 A0A096LNJ9 63 aa6.05□□□□□ -1.44
USP54-203ENST00000418501 CHAC1Q9BUX1 264 aa6.05□□□□□ -1.44
USP54-203ENST00000418501 TRAV8-6A0A0B4J262 113 aa6.04□□□□□ -1.44
USP54-203ENST00000418501 IGHV4-30-4P0DP06 118 aa6.04□□□□□ -1.44
USP54-203ENST00000418501 RNF151Q2KHN1 245 aa6.04□□□□□ -1.44
USP54-203ENST00000418501 LYRM7Q5U5X0 104 aa6.04□□□□□ -1.44
USP54-203ENST00000418501 A8MZ25 164 aa6.04□□□□□ -1.44
USP54-203ENST00000418501 GAS8-AS1O95177 125 aa6.04□□□□□ -1.44
USP54-203ENST00000418501 SRSF9Q13242 221 aaKnown RBP eCLIP6.04□□□□□ -1.44
USP54-203ENST00000418501 HIGD1BQ9P298 99 aa6.04□□□□□ -1.44
USP54-203ENST00000418501 ICOSQ9Y6W8 199 aa6.04□□□□□ -1.44
USP54-203ENST00000418501 LRBAP50851 2863 aa6.04□□□□□ -1.44
USP54-203ENST00000418501 UBE2D3P61077 147 aa6.04□□□□□ -1.44
USP54-203ENST00000418501 UBE2D2P62837 147 aa6.04□□□□□ -1.44
USP54-203ENST00000418501 CSNK1G2-AS1Q8NCQ2 148 aa6.04□□□□□ -1.44
USP54-203ENST00000418501 TMEM262E9PQX1 116 aa6.03□□□□□ -1.44
USP54-203ENST00000418501 F5H768 121 aa6.03□□□□□ -1.44
USP54-203ENST00000418501 FAM222AQ5U5X8 452 aa6.03□□□□□ -1.44
USP54-203ENST00000418501 UFSP1Q6NVU6 142 aa6.03□□□□□ -1.44
USP54-203ENST00000418501 SFTA2Q6UW10 78 aa6.03□□□□□ -1.44
USP54-203ENST00000418501 SLC25A29Q8N8R3 303 aa6.03□□□□□ -1.44
USP54-203ENST00000418501 HECTD1Q9ULT8 2610 aa6.03□□□□□ -1.44
USP54-203ENST00000418501 ACANP16112 2415 aa6.03□□□□□ -1.44
USP54-203ENST00000418501 IGIPA6NJ69 53 aa6.03□□□□□ -1.44
USP54-203ENST00000418501 E9PLD3 99 aa6.03□□□□□ -1.44
USP54-203ENST00000418501 HIST1H4GQ99525 98 aa6.03□□□□□ -1.44
USP54-203ENST00000418501 CSDC2Q9Y534 153 aaKnown RBP6.03□□□□□ -1.44
USP54-203ENST00000418501 ASPMQ8IZT6 3477 aa6.02□□□□□ -1.45
USP54-203ENST00000418501 ZNF815PA8K554 130 aa6.02□□□□□ -1.45
USP54-203ENST00000418501 GYPEP15421 78 aa6.02□□□□□ -1.45
USP54-203ENST00000418501 SPATA25Q9BR10 227 aa6.02□□□□□ -1.45
USP54-203ENST00000418501 VPS13CQ709C8 3753 aa6.02□□□□□ -1.45
USP54-203ENST00000418501 IGHV4-28A0A0C4DH34 117 aa6.02□□□□□ -1.45
USP54-203ENST00000418501 MYMXA0A1B0GTQ4 84 aa6.02□□□□□ -1.45
USP54-203ENST00000418501 LEPROTO15243 131 aa6.02□□□□□ -1.45
USP54-203ENST00000418501 HINT1P49773 126 aaPredicted RBP6.02□□□□□ -1.45
USP54-203ENST00000418501 SS18Q15532 418 aa6.02□□□□□ -1.45
USP54-203ENST00000418501 TINCRA0A1B0GVN0 87 aa6.02□□□□□ -1.45
USP54-203ENST00000418501 TAX1BP3O14907 124 aa6.02□□□□□ -1.45
USP54-203ENST00000418501 NFE4Q86UQ8 179 aa6.02□□□□□ -1.45
USP54-203ENST00000418501 APCP25054 2843 aa6.02□□□□□ -1.45
USP54-203ENST00000418501 TRAV26-1A0A087WT03 109 aa6.02□□□□□ -1.45
USP54-203ENST00000418501 IGHV3-38A0A0C4DH36 116 aa6.02□□□□□ -1.45
USP54-203ENST00000418501 FGF6P10767 208 aa6.02□□□□□ -1.45
USP54-203ENST00000418501 RPL39P62891 51 aaKnown RBP6.02□□□□□ -1.45
USP54-203ENST00000418501 LAMA5O15230 3695 aa6.01□□□□□ -1.45
USP54-203ENST00000418501 UTP20O75691 2785 aaKnown RBP6.01□□□□□ -1.45
USP54-203ENST00000418501 HTN3P15516 51 aa6.01□□□□□ -1.45
USP54-203ENST00000418501 VPS25Q9BRG1 176 aa6.01□□□□□ -1.45
USP54-203ENST00000418501 IGLV4-3A0A075B6K6 122 aa6.01□□□□□ -1.45
USP54-203ENST00000418501 TIRAPP58753 221 aa6.01□□□□□ -1.45
USP54-203ENST00000418501 NBEAQ8NFP9 2946 aa6.01□□□□□ -1.45
USP54-203ENST00000418501 EGFEM1PQ0D2K5 195 aa6□□□□□ -1.45
USP54-203ENST00000418501 CENPEQ02224 2701 aa6□□□□□ -1.45
USP54-203ENST00000418501 MTORP42345 2549 aa6□□□□□ -1.45
USP54-203ENST00000418501 IGKV2D-29A0A075B6S2 120 aaPredicted RBP6□□□□□ -1.45
USP54-203ENST00000418501 IGKV2-29A2NJV5 120 aaPredicted RBP6□□□□□ -1.45
USP54-203ENST00000418501 GIG44P09565 113 aaPredicted RBP6□□□□□ -1.45
USP54-203ENST00000418501 SMIM13P0DJ93 91 aa6□□□□□ -1.45
USP54-203ENST00000418501 FHL2Q14192 279 aa6□□□□□ -1.45
USP54-203ENST00000418501 LINC00612Q8N6U2 182 aa6□□□□□ -1.45
USP54-203ENST00000418501 P0DMU3 169 aa6□□□□□ -1.45
USP54-203ENST00000418501 FAM231AP0DMU4 169 aa6□□□□□ -1.45
USP54-203ENST00000418501 FAM231CP0DMU5 169 aa6□□□□□ -1.45
USP54-203ENST00000418501 X6R8D5 127 aa6□□□□□ -1.45
USP54-203ENST00000418501 TRBV6-8A0A0A6YYG3 113 aa5.99□□□□□ -1.45
USP54-203ENST00000418501 DEFB121Q5J5C9 76 aa5.99□□□□□ -1.45
USP54-203ENST00000418501 UBE2D4Q9Y2X8 147 aa5.99□□□□□ -1.45
USP54-203ENST00000418501 COL12A1Q99715 3063 aa5.99□□□□□ -1.45
USP54-203ENST00000418501 J3QQQ9 107 aa5.99□□□□□ -1.45
USP54-203ENST00000418501 OXLD1Q5BKU9 147 aa5.99□□□□□ -1.45
USP54-203ENST00000418501 CHCHD7Q9BUK0 85 aa5.99□□□□□ -1.45
USP54-203ENST00000418501 RPL24P83731 157 aaKnown RBP5.99□□□□□ -1.45
USP54-203ENST00000418501 GTF2H5Q6ZYL4 71 aa5.99□□□□□ -1.45
USP54-203ENST00000418501 C11orf68Q9H3H3 251 aaKnown RBP5.99□□□□□ -1.45
USP54-203ENST00000418501 PRSS2P07478 247 aa5.98□□□□□ -1.45
USP54-203ENST00000418501 AMELXQ99217 191 aa5.98□□□□□ -1.45
USP54-203ENST00000418501 GAGE6Q13070 117 aa5.98□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms