RNA–Protein interactions for RNA: ENST00000410016.5

HOXD3-202, Transcript of homeobox D3, humanhuman

APPRIS P1 TSL 5 BASIC

Gene HOXD3, Length 2,384 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-202ENST00000410016 HIST2H2BDQ6DRA6 164 aa11.56□□□□□ -0.56
HOXD3-202ENST00000410016 CFAP126Q5VTH2 177 aa11.55□□□□□ -0.56
HOXD3-202ENST00000410016 KRTAP1-3Q8IUG1 177 aa11.55□□□□□ -0.56
HOXD3-202ENST00000410016 C11orf72Q8NBR9 251 aa11.55□□□□□ -0.56
HOXD3-202ENST00000410016 Q96MF0 132 aa11.55□□□□□ -0.56
HOXD3-202ENST00000410016 CD28P10747 220 aa11.54□□□□□ -0.56
HOXD3-202ENST00000410016 MRPS36P82909 103 aaKnown RBP11.54□□□□□ -0.56
HOXD3-202ENST00000410016 CEMP1Q6PRD7 247 aaPredicted RBP11.54□□□□□ -0.56
HOXD3-202ENST00000410016 SFTA2Q6UW10 78 aa11.54□□□□□ -0.56
HOXD3-202ENST00000410016 TNFRSF18Q9Y5U5 241 aa11.54□□□□□ -0.56
HOXD3-202ENST00000410016 NACAE9PAV3 2078 aa11.54□□□□□ -0.56
HOXD3-202ENST00000410016 IGHV3-64A0A075B6Q5 118 aa11.54□□□□□ -0.56
HOXD3-202ENST00000410016 SMCPP49901 116 aaPredicted RBP11.54□□□□□ -0.56
HOXD3-202ENST00000410016 ZNF415Q09FC8 603 aa11.54□□□□□ -0.56
HOXD3-202ENST00000410016 LINC00467Q9BRT7 94 aa11.54□□□□□ -0.56
HOXD3-202ENST00000410016 C10orf126Q8N4M7 172 aa11.53□□□□□ -0.56
HOXD3-202ENST00000410016 TLN2Q9Y4G6 2542 aa11.53□□□□□ -0.56
HOXD3-202ENST00000410016 LOC107984156A0A0G2JMH3 177 aa11.53□□□□□ -0.56
HOXD3-202ENST00000410016 KHDC1LQ5JSQ8 128 aa11.53□□□□□ -0.56
HOXD3-202ENST00000410016 ARL17AQ8IVW1 177 aa11.53□□□□□ -0.56
HOXD3-202ENST00000410016 LINC01587Q99440 93 aa11.53□□□□□ -0.56
HOXD3-202ENST00000410016 CHCHD7Q9BUK0 85 aa11.53□□□□□ -0.56
HOXD3-202ENST00000410016 APCP25054 2843 aa11.53□□□□□ -0.56
HOXD3-202ENST00000410016 SMAGPQ0VAQ4 97 aa11.52□□□□□ -0.57
HOXD3-202ENST00000410016 BEAN1Q3B7T3 259 aa11.52□□□□□ -0.57
HOXD3-202ENST00000410016 FAM110AQ9BQ89 295 aa11.52□□□□□ -0.57
HOXD3-202ENST00000410016 SPATA25Q9BR10 227 aa11.52□□□□□ -0.57
HOXD3-202ENST00000410016 EIF4EBP3O60516 100 aaPredicted RBP11.52□□□□□ -0.57
HOXD3-202ENST00000410016 DYNLRB2Q8TF09 96 aa11.52□□□□□ -0.57
HOXD3-202ENST00000410016 SPXQ9BT56 116 aa11.52□□□□□ -0.57
HOXD3-202ENST00000410016 PSMB2P49721 201 aa11.51□□□□□ -0.57
HOXD3-202ENST00000410016 INSL3P51460 131 aa11.51□□□□□ -0.57
HOXD3-202ENST00000410016 PRO1854Q9UHT4 67 aa11.51□□□□□ -0.57
HOXD3-202ENST00000410016 A4D1N5 150 aa11.5□□□□□ -0.57
HOXD3-202ENST00000410016 J3QR89 54 aa11.5□□□□□ -0.57
HOXD3-202ENST00000410016 IGHV3-53P01767 116 aa11.5□□□□□ -0.57
HOXD3-202ENST00000410016 IGHV3-30-3P0DP02 117 aa11.5□□□□□ -0.57
HOXD3-202ENST00000410016 Q6ZSV7 163 aa11.5□□□□□ -0.57
HOXD3-202ENST00000410016 GTSF1LQ9H1H1 148 aa11.5□□□□□ -0.57
HOXD3-202ENST00000410016 UBE2D4Q9Y2X8 147 aa11.5□□□□□ -0.57
HOXD3-202ENST00000410016 SHISA2Q6UWI4 295 aa11.5□□□□□ -0.57
HOXD3-202ENST00000410016 CHD6Q8TD26 2715 aa11.5□□□□□ -0.57
HOXD3-202ENST00000410016 RAX2Q96IS3 184 aa11.5□□□□□ -0.57
HOXD3-202ENST00000410016 EPG5Q9HCE0 2579 aa11.5□□□□□ -0.57
HOXD3-202ENST00000410016 NBPF19A0A087WUL8 3843 aa11.5□□□□□ -0.57
HOXD3-202ENST00000410016 RNASE13Q5GAN3 156 aaKnown RBP11.49□□□□□ -0.57
HOXD3-202ENST00000410016 GEMIN7Q9H840 131 aaKnown RBP11.49□□□□□ -0.57
HOXD3-202ENST00000410016 TSSC4Q9Y5U2 329 aaPredicted RBP11.49□□□□□ -0.57
HOXD3-202ENST00000410016 A0A0J9YXY3 114 aa11.49□□□□□ -0.57
HOXD3-202ENST00000410016 GAGE12HA6NDE8 117 aa11.49□□□□□ -0.57
HOXD3-202ENST00000410016 TCL1BO95988 128 aa11.49□□□□□ -0.57
HOXD3-202ENST00000410016 ODF3L2Q3SX64 289 aa11.49□□□□□ -0.57
HOXD3-202ENST00000410016 TMEM86BQ8N661 226 aa11.49□□□□□ -0.57
HOXD3-202ENST00000410016 INSP01308 110 aa11.48□□□□□ -0.57
HOXD3-202ENST00000410016 MUSTN1Q8IVN3 82 aa11.48□□□□□ -0.57
HOXD3-202ENST00000410016 SPANXA1Q9NS26 97 aa11.48□□□□□ -0.57
HOXD3-202ENST00000410016 NF1P21359 2839 aa11.48□□□□□ -0.57
HOXD3-202ENST00000410016 TRAV8-3A0A0A6YYJ7 113 aa11.48□□□□□ -0.57
HOXD3-202ENST00000410016 RS1O15537 224 aa11.48□□□□□ -0.57
HOXD3-202ENST00000410016 TMEM263Q8WUH6 116 aaKnown RBP11.48□□□□□ -0.57
HOXD3-202ENST00000410016 CUBNO60494 3623 aa11.47□□□□□ -0.57
HOXD3-202ENST00000410016 DNAJC30Q96LL9 226 aa11.47□□□□□ -0.57
HOXD3-202ENST00000410016 LITAFQ99732 161 aa11.47□□□□□ -0.57
HOXD3-202ENST00000410016 TIMM21Q9BVV7 248 aa11.47□□□□□ -0.57
HOXD3-202ENST00000410016 SONP18583 2426 aaKnown RBP11.47□□□□□ -0.57
HOXD3-202ENST00000410016 TRBV20-1A0A075B6N2 111 aa11.47□□□□□ -0.57
HOXD3-202ENST00000410016 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.47□□□□□ -0.57
HOXD3-202ENST00000410016 IGHV1-58A0A0C4DH39 117 aa11.47□□□□□ -0.57
HOXD3-202ENST00000410016 TINCRA0A1B0GVN0 87 aa11.47□□□□□ -0.57
HOXD3-202ENST00000410016 IGKV2-29A2NJV5 120 aaPredicted RBP11.47□□□□□ -0.57
HOXD3-202ENST00000410016 LYRM7Q5U5X0 104 aa11.47□□□□□ -0.57
HOXD3-202ENST00000410016 IGHV3-38A0A0C4DH36 116 aa11.46□□□□□ -0.57
HOXD3-202ENST00000410016 ADARB2-AS1A8MUL3 147 aa11.46□□□□□ -0.57
HOXD3-202ENST00000410016 IGHV3-33P01772 117 aa11.46□□□□□ -0.57
HOXD3-202ENST00000410016 XCL2Q9UBD3 114 aa11.46□□□□□ -0.57
HOXD3-202ENST00000410016 FOXI1Q12951 378 aa11.46□□□□□ -0.58
HOXD3-202ENST00000410016 FHL3Q13643 280 aa11.46□□□□□ -0.58
HOXD3-202ENST00000410016 ATP6V0E2Q8NHE4 81 aa11.46□□□□□ -0.58
HOXD3-202ENST00000410016 C1QTNF4Q9BXJ3 329 aa11.46□□□□□ -0.58
HOXD3-202ENST00000410016 ITPR3Q14573 2671 aa11.46□□□□□ -0.58
HOXD3-202ENST00000410016 A0A0B4J2C4 111 aa11.45□□□□□ -0.58
HOXD3-202ENST00000410016 C1orf158Q8N1D5 194 aa11.45□□□□□ -0.58
HOXD3-202ENST00000410016 TRAV25A0A0B4J276 109 aa11.45□□□□□ -0.58
HOXD3-202ENST00000410016 Q6ZUT4 128 aa11.45□□□□□ -0.58
HOXD3-202ENST00000410016 SBSPONQ8IVN8 264 aa11.45□□□□□ -0.58
HOXD3-202ENST00000410016 VSIG2Q96IQ7 327 aa11.45□□□□□ -0.58
HOXD3-202ENST00000410016 ZNF418Q8TF45 676 aaPredicted RBP11.44□□□□□ -0.58
HOXD3-202ENST00000410016 DNAJC9-AS1A6NH13 148 aa11.43□□□□□ -0.58
HOXD3-202ENST00000410016 C11orf44Q8N8P7 122 aa11.43□□□□□ -0.58
HOXD3-202ENST00000410016 IL17DQ8TAD2 202 aa11.43□□□□□ -0.58
HOXD3-202ENST00000410016 A8MZ25 164 aa11.43□□□□□ -0.58
HOXD3-202ENST00000410016 ADAMTSL4-AS1Q5T5F5 129 aa11.43□□□□□ -0.58
HOXD3-202ENST00000410016 WFDC11Q8NEX6 87 aa11.43□□□□□ -0.58
HOXD3-202ENST00000410016 ESM1Q9NQ30 184 aa11.42□□□□□ -0.58
HOXD3-202ENST00000410016 NDUFA12Q9UI09 145 aa11.42□□□□□ -0.58
HOXD3-202ENST00000410016 SCGB1C2P0DMR2 95 aa11.42□□□□□ -0.58
HOXD3-202ENST00000410016 STHQ8IWL8 128 aa11.42□□□□□ -0.58
HOXD3-202ENST00000410016 ERG28Q9UKR5 140 aa11.42□□□□□ -0.58
HOXD3-202ENST00000410016 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.41□□□□□ -0.58
HOXD3-202ENST00000410016 CCL24O00175 119 aa11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 187.7 ms