RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 HRCT1Q6UXD1 115 aa9.91□□□□□ -0.82
COL6A3-206ENST00000409809 B9D2Q9BPU9 175 aa9.91□□□□□ -0.82
COL6A3-206ENST00000409809 MRPS12O15235 138 aaKnown RBP9.9□□□□□ -0.82
COL6A3-206ENST00000409809 VPREB3Q9UKI3 123 aa9.9□□□□□ -0.82
COL6A3-206ENST00000409809 LYNX1G3V0Z9 82 aa9.9□□□□□ -0.83
COL6A3-206ENST00000409809 LYNX1P0DP58 116 aa9.9□□□□□ -0.83
COL6A3-206ENST00000409809 LOC107984640A0A0U1RRK4 108 aa9.89□□□□□ -0.83
COL6A3-206ENST00000409809 TMEM263Q8WUH6 116 aaKnown RBP9.89□□□□□ -0.83
COL6A3-206ENST00000409809 SPAG11BQ08648 103 aa9.89□□□□□ -0.83
COL6A3-206ENST00000409809 LOXL1Q08397 574 aaPredicted RBP9.89□□□□□ -0.83
COL6A3-206ENST00000409809 LYPD6Q86Y78 171 aa9.89□□□□□ -0.83
COL6A3-206ENST00000409809 MBD6Q96DN6 1003 aa9.89□□□□□ -0.83
COL6A3-206ENST00000409809 IGKV2D-24A0A075B6R9 120 aa9.89□□□□□ -0.83
COL6A3-206ENST00000409809 GYPEP15421 78 aa9.89□□□□□ -0.83
COL6A3-206ENST00000409809 Q8N9L7 120 aa9.89□□□□□ -0.83
COL6A3-206ENST00000409809 SEM1Q6ZVN7 128 aa9.89□□□□□ -0.83
COL6A3-206ENST00000409809 TLN1Q9Y490 2541 aaKnown RBP9.89□□□□□ -0.83
COL6A3-206ENST00000409809 PRB4P10163 310 aaPredicted RBP9.88□□□□□ -0.83
COL6A3-206ENST00000409809 C4orf48Q5BLP8 95 aa9.88□□□□□ -0.83
COL6A3-206ENST00000409809 Q9HAA7 133 aa9.88□□□□□ -0.83
COL6A3-206ENST00000409809 DKK4Q9UBT3 224 aa9.88□□□□□ -0.83
COL6A3-206ENST00000409809 CFHR3Q02985 330 aa9.88□□□□□ -0.83
COL6A3-206ENST00000409809 CTSGP08311 255 aa9.88□□□□□ -0.83
COL6A3-206ENST00000409809 HOXB4P17483 251 aaPredicted RBP9.88□□□□□ -0.83
COL6A3-206ENST00000409809 TRBV27A0A0K0K1C4 114 aa9.88□□□□□ -0.83
COL6A3-206ENST00000409809 P0C879 139 aa9.88□□□□□ -0.83
COL6A3-206ENST00000409809 TPSG1Q9NRR2 321 aa9.88□□□□□ -0.83
COL6A3-206ENST00000409809 VWCEQ96DN2 955 aa9.88□□□□□ -0.83
COL6A3-206ENST00000409809 C17orf77Q96MU5 243 aa9.88□□□□□ -0.83
COL6A3-206ENST00000409809 G3V318 75 aa9.87□□□□□ -0.83
COL6A3-206ENST00000409809 DHRS4-AS1Q9P1J3 65 aa9.87□□□□□ -0.83
COL6A3-206ENST00000409809 LIMD2Q9BT23 127 aa9.87□□□□□ -0.83
COL6A3-206ENST00000409809 IGFL3Q6UXB1 125 aa9.87□□□□□ -0.83
COL6A3-206ENST00000409809 GPHB5Q86YW7 130 aa9.87□□□□□ -0.83
COL6A3-206ENST00000409809 BRD3OSQ6XYD6 125 aa9.86□□□□□ -0.83
COL6A3-206ENST00000409809 RSPO1Q2MKA7 263 aaPredicted RBP9.86□□□□□ -0.83
COL6A3-206ENST00000409809 PATE2Q6UY27 113 aa9.86□□□□□ -0.83
COL6A3-206ENST00000409809 E7EQL1 145 aa9.86□□□□□ -0.83
COL6A3-206ENST00000409809 TTTY13Q9BZ97 58 aa9.86□□□□□ -0.83
COL6A3-206ENST00000409809 CXCL6P80162 114 aa9.85□□□□□ -0.83
COL6A3-206ENST00000409809 UBE2D4Q9Y2X8 147 aa9.85□□□□□ -0.83
COL6A3-206ENST00000409809 BPESC1Q9GZL8 116 aa9.85□□□□□ -0.83
COL6A3-206ENST00000409809 MSRB1Q9NZV6 116 aa9.85□□□□□ -0.83
COL6A3-206ENST00000409809 CGB3P0DN86 165 aa9.85□□□□□ -0.83
COL6A3-206ENST00000409809 SPART-AS1P0CW21 52 aa9.85□□□□□ -0.83
COL6A3-206ENST00000409809 COL8A2P25067 703 aa9.84□□□□□ -0.83
COL6A3-206ENST00000409809 UBE2D3P61077 147 aa9.84□□□□□ -0.83
COL6A3-206ENST00000409809 IGHV4-4A0A075B6R2 117 aa9.84□□□□□ -0.83
COL6A3-206ENST00000409809 CCL24O00175 119 aa9.84□□□□□ -0.83
COL6A3-206ENST00000409809 BCE1O60756 84 aa9.84□□□□□ -0.83
COL6A3-206ENST00000409809 CLPSL2Q6UWE3 100 aa9.84□□□□□ -0.83
COL6A3-206ENST00000409809 CGB7P0DN87 165 aa9.84□□□□□ -0.83
COL6A3-206ENST00000409809 Q0VFX4 171 aa9.84□□□□□ -0.83
COL6A3-206ENST00000409809 TRBV7-7A0A0K0K1E9 115 aa9.84□□□□□ -0.83
COL6A3-206ENST00000409809 ZFAND2AQ8N6M9 145 aa9.84□□□□□ -0.83
COL6A3-206ENST00000409809 CNFNQ9BYD5 112 aa9.84□□□□□ -0.83
COL6A3-206ENST00000409809 HHLA3Q9XRX5 114 aa9.84□□□□□ -0.83
COL6A3-206ENST00000409809 PRB1P04280 392 aa9.84□□□□□ -0.83
COL6A3-206ENST00000409809 CCKP06307 115 aa9.84□□□□□ -0.83
COL6A3-206ENST00000409809 PRB2P02812 416 aaPredicted RBP9.83□□□□□ -0.84
COL6A3-206ENST00000409809 PRYO14603 147 aa9.83□□□□□ -0.84
COL6A3-206ENST00000409809 NCR3O14931 201 aa9.83□□□□□ -0.84
COL6A3-206ENST00000409809 RNF185Q96GF1 192 aa9.83□□□□□ -0.84
COL6A3-206ENST00000409809 IGLV2-8P01709 118 aa9.83□□□□□ -0.84
COL6A3-206ENST00000409809 ZMAT4Q9H898 229 aa9.83□□□□□ -0.84
COL6A3-206ENST00000409809 TRBV10-3A0A0K0K1G6 114 aa9.82□□□□□ -0.84
COL6A3-206ENST00000409809 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP9.82□□□□□ -0.84
COL6A3-206ENST00000409809 SNURFQ9Y675 71 aa9.82□□□□□ -0.84
COL6A3-206ENST00000409809 LINC00574Q9H8X3 128 aa9.82□□□□□ -0.84
COL6A3-206ENST00000409809 ZNF22P17026 224 aaPredicted RBP9.81□□□□□ -0.84
COL6A3-206ENST00000409809 NAV2Q8IVL1 2488 aa9.81□□□□□ -0.84
COL6A3-206ENST00000409809 TRBV6-5A0A0K0K1A5 114 aa9.81□□□□□ -0.84
COL6A3-206ENST00000409809 CCDC140Q96MF4 163 aa9.81□□□□□ -0.84
COL6A3-206ENST00000409809 IGKV1OR2-108A0A075B7D4 117 aa9.8□□□□□ -0.84
COL6A3-206ENST00000409809 WDR87Q6ZQQ6 2873 aa9.8□□□□□ -0.84
COL6A3-206ENST00000409809 IGHV7-81A0A0B4J1V7 117 aa9.8□□□□□ -0.84
COL6A3-206ENST00000409809 IGLV2-14P01704 120 aa9.8□□□□□ -0.84
COL6A3-206ENST00000409809 TMEM105Q8N8V8 129 aa9.8□□□□□ -0.84
COL6A3-206ENST00000409809 Q8N976 141 aa9.8□□□□□ -0.84
COL6A3-206ENST00000409809 WFDC10AQ9H1F0 79 aa9.79□□□□□ -0.84
COL6A3-206ENST00000409809 CRYGAP11844 174 aa9.79□□□□□ -0.84
COL6A3-206ENST00000409809 CCL18P55774 89 aa9.79□□□□□ -0.84
COL6A3-206ENST00000409809 RPL28P46779 137 aaKnown RBP9.79□□□□□ -0.84
COL6A3-206ENST00000409809 LRRK2Q5S007 2527 aa9.79□□□□□ -0.84
COL6A3-206ENST00000409809 TLN2Q9Y4G6 2542 aa9.79□□□□□ -0.84
COL6A3-206ENST00000409809 ZNRD1Q9P1U0 126 aa9.79□□□□□ -0.84
COL6A3-206ENST00000409809 LTBP2Q14767 1821 aa9.79□□□□□ -0.84
COL6A3-206ENST00000409809 GDF5OSQ5U4N7 250 aa9.78□□□□□ -0.84
COL6A3-206ENST00000409809 C11orf53Q8IXP5 236 aa9.78□□□□□ -0.84
COL6A3-206ENST00000409809 IGLV4-3A0A075B6K6 122 aa9.78□□□□□ -0.84
COL6A3-206ENST00000409809 Q6ZQT7 251 aa9.78□□□□□ -0.84
COL6A3-206ENST00000409809 ESM1Q9NQ30 184 aa9.78□□□□□ -0.84
COL6A3-206ENST00000409809 TP53TG3Q9ULZ0 132 aa9.78□□□□□ -0.84
COL6A3-206ENST00000409809 WT1P19544 449 aaPredicted RBP9.77□□□□□ -0.84
COL6A3-206ENST00000409809 IGLV2-23P01705 113 aa9.77□□□□□ -0.85
COL6A3-206ENST00000409809 COL4A6Q14031 1691 aa9.77□□□□□ -0.85
COL6A3-206ENST00000409809 IGHV4OR15-8A0A075B7B6 117 aa9.76□□□□□ -0.85
COL6A3-206ENST00000409809 A0A087WW49 117 aa9.76□□□□□ -0.85
COL6A3-206ENST00000409809 F8P00451 2351 aa9.76□□□□□ -0.85
COL6A3-206ENST00000409809 UBE2D1P51668 147 aa9.76□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 65.2 ms