RNA–Protein interactions for RNA: ENST00000409766.7

USP39-204, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,033 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-204ENST00000409766 PYGO1Q9Y3Y4 419 aa14.48□□□□□ -0.09
USP39-204ENST00000409766 UBE2V1Q13404 147 aa14.47□□□□□ -0.09
USP39-204ENST00000409766 CSNK1G2-AS1Q8NCQ2 148 aa14.47□□□□□ -0.09
USP39-204ENST00000409766 OR4C5Q8NGB2 326 aa14.47□□□□□ -0.09
USP39-204ENST00000409766 NOTCH3Q9UM47 2321 aa14.46□□□□□ -0.09
USP39-204ENST00000409766 Q6ZTI0 123 aa14.46□□□□□ -0.09
USP39-204ENST00000409766 NFE4Q86UQ8 179 aa14.46□□□□□ -0.09
USP39-204ENST00000409766 FN1P02751 2386 aaKnown RBP14.46□□□□□ -0.09
USP39-204ENST00000409766 H3BRM9 83 aa14.46□□□□□ -0.1
USP39-204ENST00000409766 CCL25O15444 150 aa14.46□□□□□ -0.1
USP39-204ENST00000409766 GCSHP23434 173 aa14.46□□□□□ -0.1
USP39-204ENST00000409766 FAM104AQ969W3 186 aa14.46□□□□□ -0.1
USP39-204ENST00000409766 CHCHD7Q9BUK0 85 aa14.46□□□□□ -0.1
USP39-204ENST00000409766 C1QTNF4Q9BXJ3 329 aa14.46□□□□□ -0.1
USP39-204ENST00000409766 FXYD2P54710 66 aa14.45□□□□□ -0.1
USP39-204ENST00000409766 DAZ2Q13117 558 aaKnown RBP14.45□□□□□ -0.1
USP39-204ENST00000409766 VAMP3Q15836 100 aa14.45□□□□□ -0.1
USP39-204ENST00000409766 ZNF479Q96JC4 524 aa14.45□□□□□ -0.1
USP39-204ENST00000409766 TM2D2Q9BX73 214 aa14.45□□□□□ -0.1
USP39-204ENST00000409766 PLAC8L1A1L4L8 177 aa14.44□□□□□ -0.1
USP39-204ENST00000409766 K7EP13 123 aa14.44□□□□□ -0.1
USP39-204ENST00000409766 HERVK_113P61574 105 aa14.44□□□□□ -0.1
USP39-204ENST00000409766 TAL2Q16559 108 aa14.44□□□□□ -0.1
USP39-204ENST00000409766 CEND1Q8N111 149 aa14.44□□□□□ -0.1
USP39-204ENST00000409766 PTTG1IPP53801 180 aa14.44□□□□□ -0.1
USP39-204ENST00000409766 VCX2Q9H322 139 aa14.44□□□□□ -0.1
USP39-204ENST00000409766 TMEM170BQ5T4T1 132 aa14.43□□□□□ -0.1
USP39-204ENST00000409766 C16orf74Q96GX8 76 aa14.43□□□□□ -0.1
USP39-204ENST00000409766 NOP10Q9NPE3 64 aaKnown RBP14.43□□□□□ -0.1
USP39-204ENST00000409766 FLNBO75369 2602 aaKnown RBP14.43□□□□□ -0.1
USP39-204ENST00000409766 TRAV4A0A0B4J268 109 aa14.42□□□□□ -0.1
USP39-204ENST00000409766 VWFP04275 2813 aa14.42□□□□□ -0.1
USP39-204ENST00000409766 IGHV3-38A0A0C4DH36 116 aa14.42□□□□□ -0.1
USP39-204ENST00000409766 PHLDA1Q8WV24 401 aaPredicted RBP14.42□□□□□ -0.1
USP39-204ENST00000409766 AMELXQ99217 191 aa14.42□□□□□ -0.1
USP39-204ENST00000409766 C9orf118A6NHY6 69 aa14.41□□□□□ -0.1
USP39-204ENST00000409766 ZNF815PA8K554 130 aa14.41□□□□□ -0.1
USP39-204ENST00000409766 CRYBA4P53673 196 aa14.41□□□□□ -0.1
USP39-204ENST00000409766 COTL1Q14019 142 aa14.41□□□□□ -0.1
USP39-204ENST00000409766 AMMECR1LQ6DCA0 310 aa14.41□□□□□ -0.1
USP39-204ENST00000409766 CEMP1Q6PRD7 247 aaPredicted RBP14.41□□□□□ -0.1
USP39-204ENST00000409766 CRLF1O75462 422 aa14.4□□□□□ -0.1
USP39-204ENST00000409766 UBE2D4Q9Y2X8 147 aa14.4□□□□□ -0.1
USP39-204ENST00000409766 TRBV7-3A0A075B6L6 115 aa14.39□□□□□ -0.11
USP39-204ENST00000409766 HIST1H4GQ99525 98 aa14.39□□□□□ -0.11
USP39-204ENST00000409766 SPANXA1Q9NS26 97 aa14.39□□□□□ -0.11
USP39-204ENST00000409766 A0A0J9YXV3 536 aa14.39□□□□□ -0.11
USP39-204ENST00000409766 TRBV10-1A0A0K0K1A3 114 aa14.39□□□□□ -0.11
USP39-204ENST00000409766 RRN3P1Q2M238 152 aa14.39□□□□□ -0.11
USP39-204ENST00000409766 TENM1Q9UKZ4 2725 aa14.38□□□□□ -0.11
USP39-204ENST00000409766 IGKV2D-29A0A075B6S2 120 aaPredicted RBP14.38□□□□□ -0.11
USP39-204ENST00000409766 IGKV2-29A2NJV5 120 aaPredicted RBP14.38□□□□□ -0.11
USP39-204ENST00000409766 K7EQD1 137 aa14.38□□□□□ -0.11
USP39-204ENST00000409766 SMIM13P0DJ93 91 aa14.38□□□□□ -0.11
USP39-204ENST00000409766 TSPEAR-AS2P59090 65 aa14.38□□□□□ -0.11
USP39-204ENST00000409766 OVOL2Q9BRP0 275 aa14.38□□□□□ -0.11
USP39-204ENST00000409766 TMEM223A0PJW6 202 aa14.37□□□□□ -0.11
USP39-204ENST00000409766 ZNF22P17026 224 aaPredicted RBP14.37□□□□□ -0.11
USP39-204ENST00000409766 INSL3P51460 131 aa14.37□□□□□ -0.11
USP39-204ENST00000409766 SPATA3Q8NHX4 192 aa14.37□□□□□ -0.11
USP39-204ENST00000409766 RAB37Q96AX2 223 aa14.37□□□□□ -0.11
USP39-204ENST00000409766 SLC25A29Q8N8R3 303 aa14.37□□□□□ -0.11
USP39-204ENST00000409766 PLEKHB2Q96CS7 222 aa14.37□□□□□ -0.11
USP39-204ENST00000409766 MRPS36P82909 103 aaKnown RBP14.36□□□□□ -0.11
USP39-204ENST00000409766 H3BUT2 72 aa14.36□□□□□ -0.11
USP39-204ENST00000409766 RPL36AP83881 106 aaKnown RBP14.36□□□□□ -0.11
USP39-204ENST00000409766 SCGB1D4Q6XE38 83 aa14.36□□□□□ -0.11
USP39-204ENST00000409766 RPL36ALQ969Q0 106 aaKnown RBP14.36□□□□□ -0.11
USP39-204ENST00000409766 GAGE12BA1L429 117 aa14.35□□□□□ -0.11
USP39-204ENST00000409766 GAGE7O76087 117 aa14.35□□□□□ -0.11
USP39-204ENST00000409766 GAGE12FP0CL80 117 aa14.35□□□□□ -0.11
USP39-204ENST00000409766 GAGE12GP0CL81 117 aa14.35□□□□□ -0.11
USP39-204ENST00000409766 GAGE12IP0CL82 117 aa14.35□□□□□ -0.11
USP39-204ENST00000409766 NHP2Q9NX24 153 aaKnown RBP14.35□□□□□ -0.11
USP39-204ENST00000409766 J3QQQ9 107 aa14.34□□□□□ -0.11
USP39-204ENST00000409766 RNASE13Q5GAN3 156 aaKnown RBP14.34□□□□□ -0.11
USP39-204ENST00000409766 TRGV2A0A075B6R0 118 aa14.34□□□□□ -0.11
USP39-204ENST00000409766 K7ERJ3 54 aa14.34□□□□□ -0.11
USP39-204ENST00000409766 C9orf66Q5T8R8 295 aa14.34□□□□□ -0.11
USP39-204ENST00000409766 NAA38Q9BRA0 125 aaKnown RBP14.34□□□□□ -0.11
USP39-204ENST00000409766 LEPROTO15243 131 aa14.33□□□□□ -0.12
USP39-204ENST00000409766 UBE2D3P61077 147 aa14.33□□□□□ -0.12
USP39-204ENST00000409766 UBE2D2P62837 147 aa14.33□□□□□ -0.12
USP39-204ENST00000409766 DAZ4Q86SG3 579 aaKnown RBP14.33□□□□□ -0.12
USP39-204ENST00000409766 CITED1Q99966 193 aa14.33□□□□□ -0.12
USP39-204ENST00000409766 DAZ3Q9NR90 486 aaKnown RBP14.33□□□□□ -0.12
USP39-204ENST00000409766 A0A0J9YY99 117 aa14.32□□□□□ -0.12
USP39-204ENST00000409766 Q6ZUT4 128 aa14.32□□□□□ -0.12
USP39-204ENST00000409766 CIDEAO60543 219 aa14.32□□□□□ -0.12
USP39-204ENST00000409766 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP14.32□□□□□ -0.12
USP39-204ENST00000409766 TIMM21Q9BVV7 248 aa14.32□□□□□ -0.12
USP39-204ENST00000409766 LGALS3P17931 250 aaKnown RBP14.31□□□□□ -0.12
USP39-204ENST00000409766 NTM-AS1Q6ZSK4 140 aa14.31□□□□□ -0.12
USP39-204ENST00000409766 A0A1W2PPM0 123 aa14.3□□□□□ -0.12
USP39-204ENST00000409766 GAGE12JA6NER3 117 aa14.3□□□□□ -0.12
USP39-204ENST00000409766 GAGE4Q13068 117 aa14.3□□□□□ -0.12
USP39-204ENST00000409766 GAGE5Q13069 117 aa14.3□□□□□ -0.12
USP39-204ENST00000409766 C12orf74Q32Q52 190 aa14.3□□□□□ -0.12
USP39-204ENST00000409766 GAGE13Q4V321 117 aa14.3□□□□□ -0.12
USP39-204ENST00000409766 TINCRA0A1B0GVN0 87 aa14.29□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms