RNA–Protein interactions for RNA: ENST00000397545.8

CCDC40-204, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS P3 TSL 5 BASIC

Gene CCDC40, Length 4,294 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-204ENST00000397545 FAM231AP0DMU4 169 aa8.18□□□□□ -1.1
CCDC40-204ENST00000397545 FAM231CP0DMU5 169 aa8.18□□□□□ -1.1
CCDC40-204ENST00000397545 CLEC2BQ92478 149 aa8.18□□□□□ -1.1
CCDC40-204ENST00000397545 SIRPDQ9H106 197 aa8.18□□□□□ -1.1
CCDC40-204ENST00000397545 Q6ZQT7 251 aa8.17□□□□□ -1.1
CCDC40-204ENST00000397545 CFAP46Q8IYW2 2715 aa8.17□□□□□ -1.1
CCDC40-204ENST00000397545 CRLF1O75462 422 aa8.17□□□□□ -1.1
CCDC40-204ENST00000397545 GAS8-AS1O95177 125 aa8.17□□□□□ -1.1
CCDC40-204ENST00000397545 KALRNO60229 2985 aa8.17□□□□□ -1.1
CCDC40-204ENST00000397545 SRSF2Q01130 221 aaKnown RBP8.17□□□□□ -1.1
CCDC40-204ENST00000397545 TRAV13-2A0A0B4J235 113 aa8.17□□□□□ -1.1
CCDC40-204ENST00000397545 ZNF561-AS1K7EIQ3 104 aa8.16□□□□□ -1.1
CCDC40-204ENST00000397545 MYCNOSP40205 109 aa8.16□□□□□ -1.1
CCDC40-204ENST00000397545 SPANXA1Q9NS26 97 aa8.16□□□□□ -1.1
CCDC40-204ENST00000397545 TRAV25A0A0B4J276 109 aa8.16□□□□□ -1.1
CCDC40-204ENST00000397545 C19orf84I3L1E1 186 aa8.16□□□□□ -1.1
CCDC40-204ENST00000397545 DEFB121Q5J5C9 76 aa8.16□□□□□ -1.1
CCDC40-204ENST00000397545 UBL5Q9BZL1 73 aa8.16□□□□□ -1.1
CCDC40-204ENST00000397545 ICOSQ9Y6W8 199 aa8.16□□□□□ -1.1
CCDC40-204ENST00000397545 F8P00451 2351 aa8.16□□□□□ -1.1
CCDC40-204ENST00000397545 CCL24O00175 119 aa8.16□□□□□ -1.1
CCDC40-204ENST00000397545 IGLV2-11P01706 119 aa8.16□□□□□ -1.1
CCDC40-204ENST00000397545 RBX1P62877 108 aa8.15□□□□□ -1.1
CCDC40-204ENST00000397545 TMEM61Q8N0U2 210 aa8.15□□□□□ -1.1
CCDC40-204ENST00000397545 TIMM17AQ99595 171 aa8.15□□□□□ -1.1
CCDC40-204ENST00000397545 PRORYQ9H606 182 aa8.15□□□□□ -1.1
CCDC40-204ENST00000397545 TRAV26-1A0A087WT03 109 aa8.15□□□□□ -1.11
CCDC40-204ENST00000397545 TRAV4A0A0B4J268 109 aa8.15□□□□□ -1.11
CCDC40-204ENST00000397545 IGHG2P01859 326 aa8.15□□□□□ -1.11
CCDC40-204ENST00000397545 CDSNQ15517 529 aa8.15□□□□□ -1.11
CCDC40-204ENST00000397545 SMIM20Q8N5G0 67 aa8.15□□□□□ -1.11
CCDC40-204ENST00000397545 SLC25A29Q8N8R3 303 aa8.15□□□□□ -1.11
CCDC40-204ENST00000397545 C20orf203Q8NBC4 194 aa8.15□□□□□ -1.11
CCDC40-204ENST00000397545 C10orf105Q8TEF2 133 aa8.15□□□□□ -1.11
CCDC40-204ENST00000397545 CRYGBP07316 175 aa8.15□□□□□ -1.11
CCDC40-204ENST00000397545 LMO4P61968 165 aa8.15□□□□□ -1.11
CCDC40-204ENST00000397545 SND1-IT1Q9HBX3 110 aa8.15□□□□□ -1.11
CCDC40-204ENST00000397545 HELZ2Q9BYK8 2649 aaKnown RBP8.14□□□□□ -1.11
CCDC40-204ENST00000397545 IGKV3D-7A0A0C4DH55 119 aa8.14□□□□□ -1.11
CCDC40-204ENST00000397545 IGHV3-30-3P0DP02 117 aa8.14□□□□□ -1.11
CCDC40-204ENST00000397545 NDUFA11Q86Y39 141 aa8.14□□□□□ -1.11
CCDC40-204ENST00000397545 TCL1BO95988 128 aa8.14□□□□□ -1.11
CCDC40-204ENST00000397545 ZNF843Q8N446 348 aa8.14□□□□□ -1.11
CCDC40-204ENST00000397545 SMAD5-AS1Q9Y6J3 95 aa8.14□□□□□ -1.11
CCDC40-204ENST00000397545 TEP1Q99973 2627 aaKnown RBP8.14□□□□□ -1.11
CCDC40-204ENST00000397545 TACC2O95359 2948 aa8.14□□□□□ -1.11
CCDC40-204ENST00000397545 J3QLI3 93 aa8.14□□□□□ -1.11
CCDC40-204ENST00000397545 IGHV4-4A0A075B6R2 117 aa8.13□□□□□ -1.11
CCDC40-204ENST00000397545 C2orf91Q6ZV80 131 aa8.13□□□□□ -1.11
CCDC40-204ENST00000397545 MAST4O15021 2626 aa8.13□□□□□ -1.11
CCDC40-204ENST00000397545 ATRQ13535 2644 aa8.13□□□□□ -1.11
CCDC40-204ENST00000397545 LRBAP50851 2863 aa8.13□□□□□ -1.11
CCDC40-204ENST00000397545 A0A0J9YX75 114 aa8.13□□□□□ -1.11
CCDC40-204ENST00000397545 IGHG4P01861 327 aa8.13□□□□□ -1.11
CCDC40-204ENST00000397545 C20orf173Q96LM9 149 aa8.13□□□□□ -1.11
CCDC40-204ENST00000397545 ANKRD17O75179 2603 aaKnown RBP8.13□□□□□ -1.11
CCDC40-204ENST00000397545 RNF185Q96GF1 192 aa8.12□□□□□ -1.11
CCDC40-204ENST00000397545 ODF3BA8MYP8 253 aa8.12□□□□□ -1.11
CCDC40-204ENST00000397545 C11orf21Q9P2W6 132 aa8.12□□□□□ -1.11
CCDC40-204ENST00000397545 FAM236AA0A1B0GUQ0 79 aa8.12□□□□□ -1.11
CCDC40-204ENST00000397545 FAM236BA0A1B0GV22 79 aa8.12□□□□□ -1.11
CCDC40-204ENST00000397545 GPHB5Q86YW7 130 aa8.12□□□□□ -1.11
CCDC40-204ENST00000397545 Q8N976 141 aa8.12□□□□□ -1.11
CCDC40-204ENST00000397545 HIST2H2BDQ6DRA6 164 aa8.11□□□□□ -1.11
CCDC40-204ENST00000397545 Q6ZUT4 128 aa8.11□□□□□ -1.11
CCDC40-204ENST00000397545 VSIG2Q96IQ7 327 aa8.11□□□□□ -1.11
CCDC40-204ENST00000397545 SETXQ7Z333 2677 aaKnown RBP8.11□□□□□ -1.11
CCDC40-204ENST00000397545 K7EMT4 169 aa8.11□□□□□ -1.11
CCDC40-204ENST00000397545 MT-ATP8P03928 68 aa8.11□□□□□ -1.11
CCDC40-204ENST00000397545 GYPEP15421 78 aa8.11□□□□□ -1.11
CCDC40-204ENST00000397545 URB1-AS1Q96HZ7 61 aa8.11□□□□□ -1.11
CCDC40-204ENST00000397545 TMEM126AQ9H061 195 aa8.11□□□□□ -1.11
CCDC40-204ENST00000397545 TM2D2Q9BX73 214 aa8.11□□□□□ -1.11
CCDC40-204ENST00000397545 DEFB4AO15263 64 aa8.1□□□□□ -1.11
CCDC40-204ENST00000397545 C10orf99Q6UWK7 81 aa8.1□□□□□ -1.11
CCDC40-204ENST00000397545 ZFAND3Q9H8U3 227 aa8.1□□□□□ -1.11
CCDC40-204ENST00000397545 TRBV7-3A0A075B6L6 115 aa8.1□□□□□ -1.11
CCDC40-204ENST00000397545 LGALS9O00182 355 aa8.1□□□□□ -1.11
CCDC40-204ENST00000397545 FBXL19-AS1Q494R0 122 aa8.1□□□□□ -1.11
CCDC40-204ENST00000397545 ZFAND2AQ8N6M9 145 aa8.1□□□□□ -1.11
CCDC40-204ENST00000397545 BSNQ9UPA5 3926 aa8.1□□□□□ -1.11
CCDC40-204ENST00000397545 Q9HAA7 133 aa8.1□□□□□ -1.11
CCDC40-204ENST00000397545 USP24Q9UPU5 2620 aa8.09□□□□□ -1.11
CCDC40-204ENST00000397545 NEXN-AS1Q8NBZ9 246 aa8.09□□□□□ -1.11
CCDC40-204ENST00000397545 ZZEF1O43149 2961 aa8.09□□□□□ -1.11
CCDC40-204ENST00000397545 IGHV1-58A0A0C4DH39 117 aa8.09□□□□□ -1.11
CCDC40-204ENST00000397545 LY6LH3BQJ8 138 aa8.09□□□□□ -1.11
CCDC40-204ENST00000397545 LECT2O14960 151 aa8.09□□□□□ -1.11
CCDC40-204ENST00000397545 MIR7-3HGQ8N6C7 128 aa8.09□□□□□ -1.11
CCDC40-204ENST00000397545 BBC3Q96PG8 261 aaPredicted RBP8.09□□□□□ -1.11
CCDC40-204ENST00000397545 SPANXB1Q9NS25 103 aaPredicted RBP8.09□□□□□ -1.11
CCDC40-204ENST00000397545 TRBV10-2A0A0K0K1G8 114 aa8.09□□□□□ -1.11
CCDC40-204ENST00000397545 TNFRSF13BO14836 293 aaPredicted RBP8.09□□□□□ -1.11
CCDC40-204ENST00000397545 DSCR8Q96T75 97 aa8.09□□□□□ -1.11
CCDC40-204ENST00000397545 CITED1Q99966 193 aa8.09□□□□□ -1.11
CCDC40-204ENST00000397545 K7EQD1 137 aa8.09□□□□□ -1.12
CCDC40-204ENST00000397545 TEX49A0A1B0GTD5 131 aa8.08□□□□□ -1.12
CCDC40-204ENST00000397545 PSCAO43653 123 aa8.08□□□□□ -1.12
CCDC40-204ENST00000397545 MED14OSP0DP75 135 aa8.08□□□□□ -1.12
CCDC40-204ENST00000397545 CDKN2A-AS1Q9UH64 79 aa8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 79.1 ms