RNA–Protein interactions for RNA: ENST00000396386.6

CBX3-202, Transcript of chromobox 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CBX3, Length 1,857 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-202ENST00000396386 A6NDN8 102 aa10.77□□□□□ -0.69
CBX3-202ENST00000396386 CRLF1O75462 422 aa10.77□□□□□ -0.69
CBX3-202ENST00000396386 HERVK_113P61574 105 aa10.77□□□□□ -0.69
CBX3-202ENST00000396386 MAPKAPK5-AS1Q8N8E1 139 aa10.76□□□□□ -0.69
CBX3-202ENST00000396386 PRADC1Q9BSG0 188 aa10.76□□□□□ -0.69
CBX3-202ENST00000396386 TRAV4A0A0B4J268 109 aa10.76□□□□□ -0.69
CBX3-202ENST00000396386 EMP1P54849 157 aa10.76□□□□□ -0.69
CBX3-202ENST00000396386 DAZ2Q13117 558 aaKnown RBP10.76□□□□□ -0.69
CBX3-202ENST00000396386 Q6ZTI0 123 aa10.76□□□□□ -0.69
CBX3-202ENST00000396386 IGLV4-3A0A075B6K6 122 aa10.75□□□□□ -0.69
CBX3-202ENST00000396386 CSNK1G2-AS1Q8NCQ2 148 aa10.75□□□□□ -0.69
CBX3-202ENST00000396386 Q9UF83 564 aa10.75□□□□□ -0.69
CBX3-202ENST00000396386 PYGO1Q9Y3Y4 419 aa10.75□□□□□ -0.69
CBX3-202ENST00000396386 MYMXA0A1B0GTQ4 84 aa10.74□□□□□ -0.69
CBX3-202ENST00000396386 INSL3P51460 131 aa10.74□□□□□ -0.69
CBX3-202ENST00000396386 COTL1Q14019 142 aa10.74□□□□□ -0.69
CBX3-202ENST00000396386 C9orf66Q5T8R8 295 aa10.74□□□□□ -0.69
CBX3-202ENST00000396386 NFE4Q86UQ8 179 aa10.74□□□□□ -0.69
CBX3-202ENST00000396386 OPRPNQ99935 248 aaPredicted RBP10.74□□□□□ -0.69
CBX3-202ENST00000396386 NOP10Q9NPE3 64 aaKnown RBP10.74□□□□□ -0.69
CBX3-202ENST00000396386 NPSP0C0P6 89 aa10.74□□□□□ -0.69
CBX3-202ENST00000396386 RRN3P1Q2M238 152 aa10.74□□□□□ -0.69
CBX3-202ENST00000396386 ZNF479Q96JC4 524 aa10.74□□□□□ -0.69
CBX3-202ENST00000396386 PLAC8L1A1L4L8 177 aa10.73□□□□□ -0.69
CBX3-202ENST00000396386 K7EQD1 137 aa10.73□□□□□ -0.69
CBX3-202ENST00000396386 CHCHD7Q9BUK0 85 aa10.73□□□□□ -0.69
CBX3-202ENST00000396386 VCX2Q9H322 139 aa10.73□□□□□ -0.69
CBX3-202ENST00000396386 SPANXA1Q9NS26 97 aa10.73□□□□□ -0.69
CBX3-202ENST00000396386 TRBV10-1A0A0K0K1A3 114 aa10.72□□□□□ -0.69
CBX3-202ENST00000396386 GCSHP23434 173 aa10.72□□□□□ -0.69
CBX3-202ENST00000396386 CRYBA4P53673 196 aa10.72□□□□□ -0.69
CBX3-202ENST00000396386 TAL2Q16559 108 aa10.72□□□□□ -0.69
CBX3-202ENST00000396386 TMEM170BQ5T4T1 132 aa10.72□□□□□ -0.69
CBX3-202ENST00000396386 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP10.72□□□□□ -0.69
CBX3-202ENST00000396386 ZNRF2Q8NHG8 242 aa10.72□□□□□ -0.69
CBX3-202ENST00000396386 PHLDA1Q8WV24 401 aaPredicted RBP10.72□□□□□ -0.69
CBX3-202ENST00000396386 IGHV3-38A0A0C4DH36 116 aa10.72□□□□□ -0.69
CBX3-202ENST00000396386 ZNF815PA8K554 130 aa10.71□□□□□ -0.69
CBX3-202ENST00000396386 RPL36AP83881 106 aaKnown RBP10.71□□□□□ -0.69
CBX3-202ENST00000396386 RPL36ALQ969Q0 106 aaKnown RBP10.71□□□□□ -0.69
CBX3-202ENST00000396386 TRBV7-3A0A075B6L6 115 aa10.7□□□□□ -0.7
CBX3-202ENST00000396386 H3BRM9 83 aa10.7□□□□□ -0.7
CBX3-202ENST00000396386 AMELXQ99217 191 aa10.7□□□□□ -0.7
CBX3-202ENST00000396386 CITED1Q99966 193 aa10.7□□□□□ -0.7
CBX3-202ENST00000396386 OVOL2Q9BRP0 275 aa10.7□□□□□ -0.7
CBX3-202ENST00000396386 UBE2D4Q9Y2X8 147 aa10.7□□□□□ -0.7
CBX3-202ENST00000396386 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.7□□□□□ -0.7
CBX3-202ENST00000396386 IGKV2-29A2NJV5 120 aaPredicted RBP10.7□□□□□ -0.7
CBX3-202ENST00000396386 FXYD2P54710 66 aa10.7□□□□□ -0.7
CBX3-202ENST00000396386 VAMP3Q15836 100 aa10.7□□□□□ -0.7
CBX3-202ENST00000396386 CEND1Q8N111 149 aa10.7□□□□□ -0.7
CBX3-202ENST00000396386 TRGV2A0A075B6R0 118 aa10.69□□□□□ -0.7
CBX3-202ENST00000396386 GAGE12BA1L429 117 aa10.69□□□□□ -0.7
CBX3-202ENST00000396386 CIDEAO60543 219 aa10.69□□□□□ -0.7
CBX3-202ENST00000396386 GAGE7O76087 117 aa10.69□□□□□ -0.7
CBX3-202ENST00000396386 GAGE12FP0CL80 117 aa10.69□□□□□ -0.7
CBX3-202ENST00000396386 GAGE12GP0CL81 117 aa10.69□□□□□ -0.7
CBX3-202ENST00000396386 GAGE12IP0CL82 117 aa10.69□□□□□ -0.7
CBX3-202ENST00000396386 TM2D2Q9BX73 214 aa10.69□□□□□ -0.7
CBX3-202ENST00000396386 ZNF22P17026 224 aaPredicted RBP10.68□□□□□ -0.7
CBX3-202ENST00000396386 CEMP1Q6PRD7 247 aaPredicted RBP10.68□□□□□ -0.7
CBX3-202ENST00000396386 SPATA3Q8NHX4 192 aa10.68□□□□□ -0.7
CBX3-202ENST00000396386 FAM104AQ969W3 186 aa10.68□□□□□ -0.7
CBX3-202ENST00000396386 HIST1H4GQ99525 98 aa10.68□□□□□ -0.7
CBX3-202ENST00000396386 FN1P02751 2386 aaKnown RBP10.68□□□□□ -0.7
CBX3-202ENST00000396386 A0A0J9YXV3 536 aa10.68□□□□□ -0.7
CBX3-202ENST00000396386 PTTG1IPP53801 180 aa10.68□□□□□ -0.7
CBX3-202ENST00000396386 UBE2V1Q13404 147 aa10.68□□□□□ -0.7
CBX3-202ENST00000396386 SLC25A29Q8N8R3 303 aa10.68□□□□□ -0.7
CBX3-202ENST00000396386 TMEM223A0PJW6 202 aa10.67□□□□□ -0.7
CBX3-202ENST00000396386 SCGB1D4Q6XE38 83 aa10.67□□□□□ -0.7
CBX3-202ENST00000396386 Q6ZUT4 128 aa10.67□□□□□ -0.7
CBX3-202ENST00000396386 DAZ4Q86SG3 579 aaKnown RBP10.67□□□□□ -0.7
CBX3-202ENST00000396386 DAZ3Q9NR90 486 aaKnown RBP10.67□□□□□ -0.7
CBX3-202ENST00000396386 C9orf118A6NHY6 69 aa10.66□□□□□ -0.7
CBX3-202ENST00000396386 TSPEAR-AS2P59090 65 aa10.66□□□□□ -0.7
CBX3-202ENST00000396386 UBE2D3P61077 147 aa10.66□□□□□ -0.7
CBX3-202ENST00000396386 UBE2D2P62837 147 aa10.66□□□□□ -0.7
CBX3-202ENST00000396386 TIMM21Q9BVV7 248 aa10.66□□□□□ -0.7
CBX3-202ENST00000396386 GAGE12JA6NER3 117 aa10.66□□□□□ -0.7
CBX3-202ENST00000396386 K7EP13 123 aa10.66□□□□□ -0.7
CBX3-202ENST00000396386 LEPROTO15243 131 aa10.66□□□□□ -0.7
CBX3-202ENST00000396386 SMIM13P0DJ93 91 aa10.66□□□□□ -0.7
CBX3-202ENST00000396386 LGALS3P17931 250 aaKnown RBP10.66□□□□□ -0.7
CBX3-202ENST00000396386 MRPS36P82909 103 aaKnown RBP10.66□□□□□ -0.7
CBX3-202ENST00000396386 GAGE4Q13068 117 aa10.66□□□□□ -0.7
CBX3-202ENST00000396386 GAGE5Q13069 117 aa10.66□□□□□ -0.7
CBX3-202ENST00000396386 GAGE13Q4V321 117 aa10.66□□□□□ -0.7
CBX3-202ENST00000396386 RNASE13Q5GAN3 156 aaKnown RBP10.66□□□□□ -0.7
CBX3-202ENST00000396386 TRBV6-4A0A1B0GX49 114 aa10.65□□□□□ -0.7
CBX3-202ENST00000396386 J3QQQ9 107 aa10.65□□□□□ -0.7
CBX3-202ENST00000396386 CCL25O15444 150 aa10.65□□□□□ -0.7
CBX3-202ENST00000396386 RAB37Q96AX2 223 aa10.65□□□□□ -0.7
CBX3-202ENST00000396386 PLEKHB2Q96CS7 222 aa10.65□□□□□ -0.7
CBX3-202ENST00000396386 JMJD1CQ15652 2540 aa10.64□□□□□ -0.71
CBX3-202ENST00000396386 TRGV4A0A0C4DH28 118 aa10.64□□□□□ -0.71
CBX3-202ENST00000396386 NHP2Q9NX24 153 aaKnown RBP10.64□□□□□ -0.71
CBX3-202ENST00000396386 AMMECR1LQ6DCA0 310 aa10.64□□□□□ -0.71
CBX3-202ENST00000396386 TINCRA0A1B0GVN0 87 aa10.63□□□□□ -0.71
CBX3-202ENST00000396386 H3BUT2 72 aa10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 83.7 ms