RNA–Protein interactions for RNA: ENST00000394989.6

SNCA-204, Transcript of synuclein alpha, humanhuman

TSL 1 (best) BASIC

Gene SNCA, Length 3,167 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-204ENST00000394989 OR11H2Q8NH07 326 aa10.21□□□□□ -0.77
SNCA-204ENST00000394989 WNK1Q9H4A3 2382 aa10.21□□□□□ -0.77
SNCA-204ENST00000394989 B5MCH6 92 aa10.2□□□□□ -0.78
SNCA-204ENST00000394989 VCYO14598 125 aa10.2□□□□□ -0.78
SNCA-204ENST00000394989 SMCPP49901 116 aaPredicted RBP10.2□□□□□ -0.78
SNCA-204ENST00000394989 RPL39P62891 51 aaKnown RBP10.2□□□□□ -0.78
SNCA-204ENST00000394989 LINC01006Q8NI28 216 aa10.2□□□□□ -0.78
SNCA-204ENST00000394989 CITED2Q99967 270 aaPredicted RBP10.2□□□□□ -0.78
SNCA-204ENST00000394989 CDIP1Q9H305 208 aa10.2□□□□□ -0.78
SNCA-204ENST00000394989 PRO0461Q9UI25 63 aa10.2□□□□□ -0.78
SNCA-204ENST00000394989 TP53TG1Q9Y2A0 90 aa10.2□□□□□ -0.78
SNCA-204ENST00000394989 FASNP49327 2511 aaKnown RBP10.2□□□□□ -0.78
SNCA-204ENST00000394989 IGIPA6NJ69 53 aa10.2□□□□□ -0.78
SNCA-204ENST00000394989 CCL24O00175 119 aa10.2□□□□□ -0.78
SNCA-204ENST00000394989 SCGB1C2P0DMR2 95 aa10.2□□□□□ -0.78
SNCA-204ENST00000394989 ODF3L2Q3SX64 289 aa10.19□□□□□ -0.78
SNCA-204ENST00000394989 TRBV20-1A0A075B6N2 111 aa10.19□□□□□ -0.78
SNCA-204ENST00000394989 ANAPC13Q9BS18 74 aa10.19□□□□□ -0.78
SNCA-204ENST00000394989 RNASE1P07998 156 aaKnown RBP10.18□□□□□ -0.78
SNCA-204ENST00000394989 PLEKHB2Q96CS7 222 aa10.18□□□□□ -0.78
SNCA-204ENST00000394989 OTOGQ6ZRI0 2925 aa10.18□□□□□ -0.78
SNCA-204ENST00000394989 ZNF815PA8K554 130 aa10.18□□□□□ -0.78
SNCA-204ENST00000394989 Q6ZUT4 128 aa10.18□□□□□ -0.78
SNCA-204ENST00000394989 NACAE9PAV3 2078 aa10.17□□□□□ -0.78
SNCA-204ENST00000394989 PROK1P58294 105 aa10.17□□□□□ -0.78
SNCA-204ENST00000394989 TRPT1Q86TN4 253 aaKnown RBP10.17□□□□□ -0.78
SNCA-204ENST00000394989 C1QTNF4Q9BXJ3 329 aa10.17□□□□□ -0.78
SNCA-204ENST00000394989 C16orf95Q9H693 158 aa10.17□□□□□ -0.78
SNCA-204ENST00000394989 IGHV3-73A0A0B4J1V6 119 aa10.16□□□□□ -0.78
SNCA-204ENST00000394989 HECTD1Q9ULT8 2610 aa10.16□□□□□ -0.78
SNCA-204ENST00000394989 MYMXA0A1B0GTQ4 84 aa10.16□□□□□ -0.78
SNCA-204ENST00000394989 C11orf72Q8NBR9 251 aa10.16□□□□□ -0.78
SNCA-204ENST00000394989 SMR3AQ99954 134 aa10.16□□□□□ -0.78
SNCA-204ENST00000394989 IGLV4-69A0A075B6H9 119 aa10.16□□□□□ -0.78
SNCA-204ENST00000394989 P0DMU3 169 aa10.16□□□□□ -0.78
SNCA-204ENST00000394989 FAM231AP0DMU4 169 aa10.16□□□□□ -0.78
SNCA-204ENST00000394989 FAM231CP0DMU5 169 aa10.16□□□□□ -0.78
SNCA-204ENST00000394989 PRADC1Q9BSG0 188 aa10.15□□□□□ -0.78
SNCA-204ENST00000394989 TRBV7-3A0A075B6L6 115 aa10.15□□□□□ -0.78
SNCA-204ENST00000394989 CFAP126Q5VTH2 177 aa10.15□□□□□ -0.78
SNCA-204ENST00000394989 Q9UF83 564 aa10.15□□□□□ -0.78
SNCA-204ENST00000394989 TRAV25A0A0B4J276 109 aa10.14□□□□□ -0.79
SNCA-204ENST00000394989 M0R2P5 195 aa10.14□□□□□ -0.79
SNCA-204ENST00000394989 NSUN5P1Q3KNT7 163 aa10.14□□□□□ -0.79
SNCA-204ENST00000394989 CARD19Q96LW7 228 aa10.14□□□□□ -0.79
SNCA-204ENST00000394989 LINC01587Q99440 93 aa10.14□□□□□ -0.79
SNCA-204ENST00000394989 TIMM17AQ99595 171 aa10.14□□□□□ -0.79
SNCA-204ENST00000394989 EDA2RQ9HAV5 297 aa10.14□□□□□ -0.79
SNCA-204ENST00000394989 Q6ZSN1 163 aa10.14□□□□□ -0.79
SNCA-204ENST00000394989 C3orf56Q8N813 242 aa10.14□□□□□ -0.79
SNCA-204ENST00000394989 LINC00467Q9BRT7 94 aa10.14□□□□□ -0.79
SNCA-204ENST00000394989 TSPAN13O95857 204 aa10.13□□□□□ -0.79
SNCA-204ENST00000394989 XCL2Q9UBD3 114 aa10.13□□□□□ -0.79
SNCA-204ENST00000394989 TMEM238LA0A1B0GVL6 79 aa10.13□□□□□ -0.79
SNCA-204ENST00000394989 C11orf86A6NJI1 115 aa10.13□□□□□ -0.79
SNCA-204ENST00000394989 INSP01308 110 aa10.13□□□□□ -0.79
SNCA-204ENST00000394989 ZNF415Q09FC8 603 aa10.13□□□□□ -0.79
SNCA-204ENST00000394989 TMEM141Q96I45 108 aa10.13□□□□□ -0.79
SNCA-204ENST00000394989 JMJD1CQ15652 2540 aa10.12□□□□□ -0.79
SNCA-204ENST00000394989 TCL1BO95988 128 aa10.12□□□□□ -0.79
SNCA-204ENST00000394989 HILS1P60008 231 aa10.12□□□□□ -0.79
SNCA-204ENST00000394989 PMVKQ15126 192 aa10.12□□□□□ -0.79
SNCA-204ENST00000394989 OPRPNQ99935 248 aaPredicted RBP10.12□□□□□ -0.79
SNCA-204ENST00000394989 IGHV3-64A0A075B6Q5 118 aa10.12□□□□□ -0.79
SNCA-204ENST00000394989 I3L3M4 83 aa10.12□□□□□ -0.79
SNCA-204ENST00000394989 ADARB2-AS1A8MUL3 147 aa10.12□□□□□ -0.79
SNCA-204ENST00000394989 RHOHQ15669 191 aa10.12□□□□□ -0.79
SNCA-204ENST00000394989 A8MWV9 139 aa10.11□□□□□ -0.79
SNCA-204ENST00000394989 PIK3CD-AS1Q5SR53 167 aa10.11□□□□□ -0.79
SNCA-204ENST00000394989 C1orf158Q8N1D5 194 aa10.11□□□□□ -0.79
SNCA-204ENST00000394989 C20orf203Q8NBC4 194 aa10.11□□□□□ -0.79
SNCA-204ENST00000394989 STHQ8IWL8 128 aa10.11□□□□□ -0.79
SNCA-204ENST00000394989 ANKRD29Q8N6D5 301 aa10.1□□□□□ -0.79
SNCA-204ENST00000394989 ZNRF2Q8NHG8 242 aa10.1□□□□□ -0.79
SNCA-204ENST00000394989 NOTCH3Q9UM47 2321 aa10.09□□□□□ -0.79
SNCA-204ENST00000394989 BEAN1Q3B7T3 259 aa10.09□□□□□ -0.79
SNCA-204ENST00000394989 ZFAND6Q6FIF0 208 aa10.09□□□□□ -0.79
SNCA-204ENST00000394989 C9JAW5 83 aa10.09□□□□□ -0.79
SNCA-204ENST00000394989 TMEM170BQ5T4T1 132 aa10.09□□□□□ -0.79
SNCA-204ENST00000394989 ERG28Q9UKR5 140 aa10.09□□□□□ -0.79
SNCA-204ENST00000394989 TAL2Q16559 108 aa10.08□□□□□ -0.8
SNCA-204ENST00000394989 FAM104AQ969W3 186 aa10.08□□□□□ -0.8
SNCA-204ENST00000394989 HIVEP2P31629 2446 aa10.08□□□□□ -0.8
SNCA-204ENST00000394989 IGHV3OR16-12A0A075B7B8 117 aa10.08□□□□□ -0.8
SNCA-204ENST00000394989 SMIM20Q8N5G0 67 aa10.08□□□□□ -0.8
SNCA-204ENST00000394989 IL17DQ8TAD2 202 aa10.08□□□□□ -0.8
SNCA-204ENST00000394989 PPDPFLQ8WWR9 84 aa10.08□□□□□ -0.8
SNCA-204ENST00000394989 WFDC10AQ9H1F0 79 aa10.08□□□□□ -0.8
SNCA-204ENST00000394989 VWFP04275 2813 aa10.08□□□□□ -0.8
SNCA-204ENST00000394989 SPXQ9BT56 116 aa10.08□□□□□ -0.8
SNCA-204ENST00000394989 CRLF1O75462 422 aa10.07□□□□□ -0.8
SNCA-204ENST00000394989 Q1RN00 199 aa10.07□□□□□ -0.8
SNCA-204ENST00000394989 TEN1Q86WV5 123 aa10.07□□□□□ -0.8
SNCA-204ENST00000394989 A6NJY4 79 aa10.07□□□□□ -0.8
SNCA-204ENST00000394989 IGLV1-51P01701 117 aa10.07□□□□□ -0.8
SNCA-204ENST00000394989 GIG44P09565 113 aaPredicted RBP10.07□□□□□ -0.8
SNCA-204ENST00000394989 TRAV4A0A0B4J268 109 aa10.06□□□□□ -0.8
SNCA-204ENST00000394989 KRTAP10-3P60369 221 aa10.06□□□□□ -0.8
SNCA-204ENST00000394989 IGLV4-3A0A075B6K6 122 aa10.06□□□□□ -0.8
SNCA-204ENST00000394989 CCDC179H3BU77 68 aa10.06□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms