RNA–Protein interactions for RNA: ENST00000377902.5

GNE-201, Transcript of glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GNE, Length 2,565 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GNE-201ENST00000377902 DEFB112Q30KQ8 113 aa13.16□□□□□ -0.3
GNE-201ENST00000377902 DAND5Q8N907 189 aa13.16□□□□□ -0.3
GNE-201ENST00000377902 MXRA5Q9NR99 2828 aa13.16□□□□□ -0.3
GNE-201ENST00000377902 NACAE9PAV3 2078 aa13.15□□□□□ -0.3
GNE-201ENST00000377902 IGKV2D-29A0A075B6S2 120 aaPredicted RBP13.15□□□□□ -0.3
GNE-201ENST00000377902 IGHV3-38A0A0C4DH36 116 aa13.15□□□□□ -0.3
GNE-201ENST00000377902 IGKV2-29A2NJV5 120 aaPredicted RBP13.15□□□□□ -0.3
GNE-201ENST00000377902 TMEM262E9PQX1 116 aa13.15□□□□□ -0.3
GNE-201ENST00000377902 MRPS36P82909 103 aaKnown RBP13.15□□□□□ -0.3
GNE-201ENST00000377902 TEX29Q8N6K0 151 aa13.15□□□□□ -0.3
GNE-201ENST00000377902 NRGNQ92686 78 aa13.15□□□□□ -0.3
GNE-201ENST00000377902 CITED1Q99966 193 aa13.15□□□□□ -0.3
GNE-201ENST00000377902 NDUFA12Q9UI09 145 aa13.15□□□□□ -0.3
GNE-201ENST00000377902 USP9YO00507 2555 aaPredicted RBP13.15□□□□□ -0.3
GNE-201ENST00000377902 CLEC2BQ92478 149 aa13.14□□□□□ -0.31
GNE-201ENST00000377902 IGHV1-58A0A0C4DH39 117 aa13.13□□□□□ -0.31
GNE-201ENST00000377902 TNFRSF18Q9Y5U5 241 aa13.13□□□□□ -0.31
GNE-201ENST00000377902 CFAP46Q8IYW2 2715 aa13.12□□□□□ -0.31
GNE-201ENST00000377902 TRBV30A0A0K0K1B3 111 aa13.12□□□□□ -0.31
GNE-201ENST00000377902 NHLRC4P0CG21 123 aaPredicted RBP13.12□□□□□ -0.31
GNE-201ENST00000377902 MAPK1IP1LQ8NDC0 245 aa13.12□□□□□ -0.31
GNE-201ENST00000377902 ICOSQ9Y6W8 199 aa13.12□□□□□ -0.31
GNE-201ENST00000377902 TRGV11A0A075B6L2 103 aa13.12□□□□□ -0.31
GNE-201ENST00000377902 HIST2H2BDQ6DRA6 164 aa13.12□□□□□ -0.31
GNE-201ENST00000377902 PYGO1Q9Y3Y4 419 aa13.12□□□□□ -0.31
GNE-201ENST00000377902 TRBV10-2A0A0K0K1G8 114 aa13.11□□□□□ -0.31
GNE-201ENST00000377902 HOXD3P31249 432 aaPredicted RBP13.11□□□□□ -0.31
GNE-201ENST00000377902 DEFB136Q30KP8 78 aa13.11□□□□□ -0.31
GNE-201ENST00000377902 C18orf65Q6ZTR6 163 aa13.11□□□□□ -0.31
GNE-201ENST00000377902 CHCHD7Q9BUK0 85 aa13.11□□□□□ -0.31
GNE-201ENST00000377902 H7C423 109 aa13.11□□□□□ -0.31
GNE-201ENST00000377902 DEFB131AP59861 70 aa13.11□□□□□ -0.31
GNE-201ENST00000377902 VSIG2Q96IQ7 327 aa13.11□□□□□ -0.31
GNE-201ENST00000377902 POLQO75417 2590 aa13.1□□□□□ -0.31
GNE-201ENST00000377902 M0QXV9 152 aa13.1□□□□□ -0.31
GNE-201ENST00000377902 RBMY1BA6NDE4 496 aaKnown RBP13.1□□□□□ -0.31
GNE-201ENST00000377902 RBMY1EA6NEQ0 496 aaKnown RBP13.1□□□□□ -0.31
GNE-201ENST00000377902 SNCGO76070 127 aa13.1□□□□□ -0.31
GNE-201ENST00000377902 RBMY1DP0C7P1 496 aaKnown RBP13.1□□□□□ -0.31
GNE-201ENST00000377902 C2orf82Q6UX34 121 aa13.1□□□□□ -0.31
GNE-201ENST00000377902 DUX3Q96PT4 197 aa13.1□□□□□ -0.31
GNE-201ENST00000377902 LINC00467Q9BRT7 94 aa13.1□□□□□ -0.31
GNE-201ENST00000377902 UBE2D4Q9Y2X8 147 aa13.1□□□□□ -0.31
GNE-201ENST00000377902 SS18L2Q9UHA2 77 aa13.09□□□□□ -0.31
GNE-201ENST00000377902 CENPEQ02224 2701 aa13.08□□□□□ -0.32
GNE-201ENST00000377902 GAGE2BQ13066 116 aa13.08□□□□□ -0.32
GNE-201ENST00000377902 MIAQ16674 131 aa13.08□□□□□ -0.32
GNE-201ENST00000377902 GAGE2EQ4V326 116 aa13.08□□□□□ -0.32
GNE-201ENST00000377902 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP13.08□□□□□ -0.32
GNE-201ENST00000377902 GAGE2DQ9UEU5 116 aa13.08□□□□□ -0.32
GNE-201ENST00000377902 TRAV8-4A0A0B4J246 113 aa13.08□□□□□ -0.32
GNE-201ENST00000377902 A0A0U1RRA0 63 aa13.07□□□□□ -0.32
GNE-201ENST00000377902 H3BMM0 161 aa13.07□□□□□ -0.32
GNE-201ENST00000377902 SLURP1P55000 103 aa13.07□□□□□ -0.32
GNE-201ENST00000377902 UBE2WQ96B02 151 aa13.07□□□□□ -0.32
GNE-201ENST00000377902 CDKN2A-AS1Q9UH64 79 aa13.07□□□□□ -0.32
GNE-201ENST00000377902 AKAP9Q99996 3911 aa13.07□□□□□ -0.32
GNE-201ENST00000377902 USP9XQ93008 2570 aaPredicted RBP13.07□□□□□ -0.32
GNE-201ENST00000377902 SPANXDQ9BXN6 97 aa13.07□□□□□ -0.32
GNE-201ENST00000377902 SPANXCQ9NY87 97 aa13.07□□□□□ -0.32
GNE-201ENST00000377902 TINCRA0A1B0GVN0 87 aa13.06□□□□□ -0.32
GNE-201ENST00000377902 B4DSR2 109 aa13.06□□□□□ -0.32
GNE-201ENST00000377902 B5MCH6 92 aa13.06□□□□□ -0.32
GNE-201ENST00000377902 RPL13AP40429 203 aaKnown RBP13.06□□□□□ -0.32
GNE-201ENST00000377902 ZNF625Q96I27 306 aaPredicted RBP13.06□□□□□ -0.32
GNE-201ENST00000377902 C15orf53Q8NAA6 179 aa13.05□□□□□ -0.32
GNE-201ENST00000377902 NDUFV3P56181 108 aaKnown RBP13.05□□□□□ -0.32
GNE-201ENST00000377902 TTC32Q5I0X7 151 aa13.05□□□□□ -0.32
GNE-201ENST00000377902 COX6A2Q02221 97 aa13.04□□□□□ -0.32
GNE-201ENST00000377902 TMEM61Q8N0U2 210 aa13.04□□□□□ -0.32
GNE-201ENST00000377902 NDUFA7O95182 113 aa13.03□□□□□ -0.32
GNE-201ENST00000377902 TMEM101Q96IK0 257 aa13.02□□□□□ -0.32
GNE-201ENST00000377902 EDA2RQ9HAV5 297 aa13.02□□□□□ -0.32
GNE-201ENST00000377902 FBN2P35556 2912 aa13.02□□□□□ -0.33
GNE-201ENST00000377902 CCDC179H3BU77 68 aa13.02□□□□□ -0.33
GNE-201ENST00000377902 COX6CP09669 75 aa13.01□□□□□ -0.33
GNE-201ENST00000377902 GAGE5Q13069 117 aa13.01□□□□□ -0.33
GNE-201ENST00000377902 GAGE6Q13070 117 aa13.01□□□□□ -0.33
GNE-201ENST00000377902 RNF152Q8N8N0 203 aa13.01□□□□□ -0.33
GNE-201ENST00000377902 CITED2Q99967 270 aaPredicted RBP13.01□□□□□ -0.33
GNE-201ENST00000377902 SPANXA1Q9NS26 97 aa13.01□□□□□ -0.33
GNE-201ENST00000377902 LINC01587Q99440 93 aa13.01□□□□□ -0.33
GNE-201ENST00000377902 PKD1L2Q7Z442 2459 aa13.01□□□□□ -0.33
GNE-201ENST00000377902 LINC01600Q96MT4 127 aa13□□□□□ -0.33
GNE-201ENST00000377902 NOTCH3Q9UM47 2321 aa13□□□□□ -0.33
GNE-201ENST00000377902 LST1O00453 97 aa13□□□□□ -0.33
GNE-201ENST00000377902 C2CD3Q4AC94 2353 aa12.99□□□□□ -0.33
GNE-201ENST00000377902 IFITM1P13164 125 aa12.99□□□□□ -0.33
GNE-201ENST00000377902 ZNF702PQ9H963 129 aa12.99□□□□□ -0.33
GNE-201ENST00000377902 MYO9AB2RTY4 2548 aa12.99□□□□□ -0.33
GNE-201ENST00000377902 TMEM89A2RUT3 159 aa12.98□□□□□ -0.33
GNE-201ENST00000377902 ZNF415Q09FC8 603 aa12.98□□□□□ -0.33
GNE-201ENST00000377902 C11orf72Q8NBR9 251 aa12.98□□□□□ -0.33
GNE-201ENST00000377902 ANKRD17O75179 2603 aaKnown RBP12.98□□□□□ -0.33
GNE-201ENST00000377902 LINC00694P0DN24 101 aa12.98□□□□□ -0.33
GNE-201ENST00000377902 UBE2E2Q96LR5 201 aa12.98□□□□□ -0.33
GNE-201ENST00000377902 Q9H8V8 135 aa12.98□□□□□ -0.33
GNE-201ENST00000377902 CHD6Q8TD26 2715 aa12.97□□□□□ -0.33
GNE-201ENST00000377902 IGHV3OR16-12A0A075B7B8 117 aa12.97□□□□□ -0.33
GNE-201ENST00000377902 DOPEY1Q5JWR5 2465 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms