RNA–Protein interactions for RNA: ENST00000374877.7

CCDC40-203, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC40, Length 3,544 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-203ENST00000374877 TRAV4A0A0B4J268 109 aa8.19□□□□□ -1.1
CCDC40-203ENST00000374877 C9orf85Q96MD7 179 aa8.19□□□□□ -1.1
CCDC40-203ENST00000374877 I3L3M4 83 aa8.19□□□□□ -1.1
CCDC40-203ENST00000374877 IGHG2P01859 326 aa8.19□□□□□ -1.1
CCDC40-203ENST00000374877 NPC2P61916 151 aa8.19□□□□□ -1.1
CCDC40-203ENST00000374877 CITED1Q99966 193 aa8.19□□□□□ -1.1
CCDC40-203ENST00000374877 TRIAP1O43715 76 aa8.18□□□□□ -1.1
CCDC40-203ENST00000374877 CRLF1O75462 422 aa8.18□□□□□ -1.1
CCDC40-203ENST00000374877 IGHV3-30-3P0DP02 117 aa8.18□□□□□ -1.1
CCDC40-203ENST00000374877 CD28P10747 220 aa8.18□□□□□ -1.1
CCDC40-203ENST00000374877 HTN1P15515 57 aa8.18□□□□□ -1.1
CCDC40-203ENST00000374877 RNASE13Q5GAN3 156 aaKnown RBP8.18□□□□□ -1.1
CCDC40-203ENST00000374877 TRAV8-3A0A0A6YYJ7 113 aa8.18□□□□□ -1.1
CCDC40-203ENST00000374877 IGHV3-73A0A0B4J1V6 119 aa8.18□□□□□ -1.1
CCDC40-203ENST00000374877 A6NDX4 124 aa8.18□□□□□ -1.1
CCDC40-203ENST00000374877 B5MCH6 92 aa8.18□□□□□ -1.1
CCDC40-203ENST00000374877 M0R2P5 195 aa8.18□□□□□ -1.1
CCDC40-203ENST00000374877 CR1P17927 2039 aa8.18□□□□□ -1.1
CCDC40-203ENST00000374877 CSPG4Q6UVK1 2322 aa8.18□□□□□ -1.1
CCDC40-203ENST00000374877 TIMM21Q9BVV7 248 aa8.18□□□□□ -1.1
CCDC40-203ENST00000374877 PRRC2AP48634 2157 aaKnown RBP8.18□□□□□ -1.1
CCDC40-203ENST00000374877 H3BUA1 57 aa8.17□□□□□ -1.1
CCDC40-203ENST00000374877 IGHV1OR15-1A0A075B7D0 117 aa8.17□□□□□ -1.1
CCDC40-203ENST00000374877 TRAV8-4A0A0B4J246 113 aa8.17□□□□□ -1.1
CCDC40-203ENST00000374877 GAGE5Q13069 117 aa8.17□□□□□ -1.1
CCDC40-203ENST00000374877 GAGE6Q13070 117 aa8.17□□□□□ -1.1
CCDC40-203ENST00000374877 CEMP1Q6PRD7 247 aaPredicted RBP8.17□□□□□ -1.1
CCDC40-203ENST00000374877 SVIPQ8NHG7 77 aa8.17□□□□□ -1.1
CCDC40-203ENST00000374877 TMEM95Q3KNT9 176 aa8.17□□□□□ -1.1
CCDC40-203ENST00000374877 TTC32Q5I0X7 151 aa8.16□□□□□ -1.1
CCDC40-203ENST00000374877 APCP25054 2843 aa8.16□□□□□ -1.1
CCDC40-203ENST00000374877 M0QXV9 152 aa8.16□□□□□ -1.1
CCDC40-203ENST00000374877 C2orf82Q6UX34 121 aa8.16□□□□□ -1.1
CCDC40-203ENST00000374877 TRBV10-2A0A0K0K1G8 114 aa8.16□□□□□ -1.1
CCDC40-203ENST00000374877 H3BMM0 161 aa8.16□□□□□ -1.1
CCDC40-203ENST00000374877 SNRPD3P62318 126 aaKnown RBP8.16□□□□□ -1.1
CCDC40-203ENST00000374877 UBE2WQ96B02 151 aa8.16□□□□□ -1.1
CCDC40-203ENST00000374877 A0A0J9YX75 114 aa8.15□□□□□ -1.1
CCDC40-203ENST00000374877 DEFB112Q30KQ8 113 aa8.15□□□□□ -1.1
CCDC40-203ENST00000374877 Q6ZSV7 163 aa8.15□□□□□ -1.1
CCDC40-203ENST00000374877 CELSR2Q9HCU4 2923 aa8.15□□□□□ -1.1
CCDC40-203ENST00000374877 TRBV30A0A0K0K1B3 111 aa8.15□□□□□ -1.1
CCDC40-203ENST00000374877 A8MZ25 164 aa8.15□□□□□ -1.1
CCDC40-203ENST00000374877 NHLRC4P0CG21 123 aaPredicted RBP8.15□□□□□ -1.1
CCDC40-203ENST00000374877 NDUFV3P56181 108 aaKnown RBP8.15□□□□□ -1.1
CCDC40-203ENST00000374877 CRYBG3Q68DQ2 2970 aa8.15□□□□□ -1.1
CCDC40-203ENST00000374877 NDUFA12Q9UI09 145 aa8.15□□□□□ -1.1
CCDC40-203ENST00000374877 ABCA12Q86UK0 2595 aa8.15□□□□□ -1.1
CCDC40-203ENST00000374877 C15orf53Q8NAA6 179 aa8.15□□□□□ -1.11
CCDC40-203ENST00000374877 ICOSQ9Y6W8 199 aa8.15□□□□□ -1.11
CCDC40-203ENST00000374877 POLQO75417 2590 aa8.15□□□□□ -1.11
CCDC40-203ENST00000374877 K7EMT4 169 aa8.14□□□□□ -1.11
CCDC40-203ENST00000374877 IGLV1-40P01703 118 aa8.14□□□□□ -1.11
CCDC40-203ENST00000374877 KRTAP1-1Q07627 177 aa8.14□□□□□ -1.11
CCDC40-203ENST00000374877 ADAMTSL4-AS1Q5T5F5 129 aa8.14□□□□□ -1.11
CCDC40-203ENST00000374877 PROK1P58294 105 aa8.14□□□□□ -1.11
CCDC40-203ENST00000374877 COX6CP09669 75 aa8.13□□□□□ -1.11
CCDC40-203ENST00000374877 Q6YL49 198 aa8.13□□□□□ -1.11
CCDC40-203ENST00000374877 CLEC2BQ92478 149 aa8.13□□□□□ -1.11
CCDC40-203ENST00000374877 LITAFQ99732 161 aa8.13□□□□□ -1.11
CCDC40-203ENST00000374877 BRI3O95415 125 aa8.13□□□□□ -1.11
CCDC40-203ENST00000374877 IFITM1P13164 125 aa8.13□□□□□ -1.11
CCDC40-203ENST00000374877 ODF3Q96PU9 254 aa8.13□□□□□ -1.11
CCDC40-203ENST00000374877 KNCNA6PVL3 124 aa8.13□□□□□ -1.11
CCDC40-203ENST00000374877 RPL13AP40429 203 aaKnown RBP8.12□□□□□ -1.11
CCDC40-203ENST00000374877 C10orf99Q6UWK7 81 aa8.12□□□□□ -1.11
CCDC40-203ENST00000374877 GCN1Q92616 2671 aaKnown RBP8.12□□□□□ -1.11
CCDC40-203ENST00000374877 UNC79Q9P2D8 2635 aa8.12□□□□□ -1.11
CCDC40-203ENST00000374877 CENPEQ02224 2701 aa8.12□□□□□ -1.11
CCDC40-203ENST00000374877 IGHV1-58A0A0C4DH39 117 aa8.12□□□□□ -1.11
CCDC40-203ENST00000374877 H7C423 109 aa8.12□□□□□ -1.11
CCDC40-203ENST00000374877 DUX5Q96PT3 197 aa8.12□□□□□ -1.11
CCDC40-203ENST00000374877 CCDC179H3BU77 68 aa8.12□□□□□ -1.11
CCDC40-203ENST00000374877 MRPS36P82909 103 aaKnown RBP8.12□□□□□ -1.11
CCDC40-203ENST00000374877 TMEM86BQ8N661 226 aa8.12□□□□□ -1.11
CCDC40-203ENST00000374877 TNFRSF18Q9Y5U5 241 aa8.12□□□□□ -1.11
CCDC40-203ENST00000374877 PDZD2O15018 2839 aa8.11□□□□□ -1.11
CCDC40-203ENST00000374877 GAGE12JA6NER3 117 aa8.11□□□□□ -1.11
CCDC40-203ENST00000374877 GAGE7O76087 117 aa8.11□□□□□ -1.11
CCDC40-203ENST00000374877 GAGE12FP0CL80 117 aa8.11□□□□□ -1.11
CCDC40-203ENST00000374877 GAGE12GP0CL81 117 aa8.11□□□□□ -1.11
CCDC40-203ENST00000374877 GAGE12IP0CL82 117 aa8.11□□□□□ -1.11
CCDC40-203ENST00000374877 GAGE4Q13068 117 aa8.11□□□□□ -1.11
CCDC40-203ENST00000374877 DAND5Q8N907 189 aa8.11□□□□□ -1.11
CCDC40-203ENST00000374877 VPREB3Q9UKI3 123 aa8.11□□□□□ -1.11
CCDC40-203ENST00000374877 TRGV11A0A075B6L2 103 aa8.11□□□□□ -1.11
CCDC40-203ENST00000374877 IGHV4-59P01825 116 aa8.11□□□□□ -1.11
CCDC40-203ENST00000374877 VPS13CQ709C8 3753 aa8.11□□□□□ -1.11
CCDC40-203ENST00000374877 K7EQG2 157 aa8.11□□□□□ -1.11
CCDC40-203ENST00000374877 PRM2P04554 102 aa8.11□□□□□ -1.11
CCDC40-203ENST00000374877 SYNJ2BPP57105 145 aa8.11□□□□□ -1.11
CCDC40-203ENST00000374877 MIAQ16674 131 aa8.11□□□□□ -1.11
CCDC40-203ENST00000374877 FAM104AQ969W3 186 aa8.1□□□□□ -1.11
CCDC40-203ENST00000374877 DUX3Q96PT4 197 aa8.1□□□□□ -1.11
CCDC40-203ENST00000374877 Q9UF83 564 aa8.1□□□□□ -1.11
CCDC40-203ENST00000374877 PYGO1Q9Y3Y4 419 aa8.1□□□□□ -1.11
CCDC40-203ENST00000374877 IGKV2D-29A0A075B6S2 120 aaPredicted RBP8.1□□□□□ -1.11
CCDC40-203ENST00000374877 IGKV2-29A2NJV5 120 aaPredicted RBP8.1□□□□□ -1.11
CCDC40-203ENST00000374877 VSIG2Q96IQ7 327 aa8.1□□□□□ -1.11
CCDC40-203ENST00000374877 SPANXDQ9BXN6 97 aa8.09□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 71.3 ms