RNA–Protein interactions for RNA: ENST00000368045.3

CD48-201, Transcript of CD48 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD48, Length 1,793 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD48-201ENST00000368045 SCGB1C2P0DMR2 95 aa10.39□□□□□ -0.75
CD48-201ENST00000368045 TEN1Q86WV5 123 aa10.39□□□□□ -0.75
CD48-201ENST00000368045 TEX29Q8N6K0 151 aa10.39□□□□□ -0.75
CD48-201ENST00000368045 PPDPFLQ8WWR9 84 aa10.39□□□□□ -0.75
CD48-201ENST00000368045 GTSF1LQ9H1H1 148 aa10.39□□□□□ -0.75
CD48-201ENST00000368045 ZFHX3Q15911 3703 aa10.38□□□□□ -0.75
CD48-201ENST00000368045 IGHV3-64A0A075B6Q5 118 aa10.38□□□□□ -0.75
CD48-201ENST00000368045 SFTA2Q6UW10 78 aa10.38□□□□□ -0.75
CD48-201ENST00000368045 Q6ZSN1 163 aa10.38□□□□□ -0.75
CD48-201ENST00000368045 SPANXDQ9BXN6 97 aa10.38□□□□□ -0.75
CD48-201ENST00000368045 SPANXCQ9NY87 97 aa10.38□□□□□ -0.75
CD48-201ENST00000368045 DOPEY2Q9Y3R5 2298 aa10.38□□□□□ -0.75
CD48-201ENST00000368045 COL12A1Q99715 3063 aa10.38□□□□□ -0.75
CD48-201ENST00000368045 CELSR1Q9NYQ6 3014 aa10.38□□□□□ -0.75
CD48-201ENST00000368045 INSL3P51460 131 aa10.37□□□□□ -0.75
CD48-201ENST00000368045 ZNF418Q8TF45 676 aaPredicted RBP10.37□□□□□ -0.75
CD48-201ENST00000368045 RNF183Q96D59 192 aa10.37□□□□□ -0.75
CD48-201ENST00000368045 VSIG2Q96IQ7 327 aa10.37□□□□□ -0.75
CD48-201ENST00000368045 LITAFQ99732 161 aa10.37□□□□□ -0.75
CD48-201ENST00000368045 VPS13CQ709C8 3753 aa10.36□□□□□ -0.75
CD48-201ENST00000368045 PRRC2AP48634 2157 aaKnown RBP10.36□□□□□ -0.75
CD48-201ENST00000368045 EIF4EBP3O60516 100 aaPredicted RBP10.36□□□□□ -0.75
CD48-201ENST00000368045 KHDC1LQ5JSQ8 128 aa10.36□□□□□ -0.75
CD48-201ENST00000368045 NDUFA12Q9UI09 145 aa10.36□□□□□ -0.75
CD48-201ENST00000368045 IGSF10Q6WRI0 2623 aa10.36□□□□□ -0.75
CD48-201ENST00000368045 FLNCQ14315 2725 aa10.35□□□□□ -0.75
CD48-201ENST00000368045 TIMM17BO60830 172 aa10.35□□□□□ -0.75
CD48-201ENST00000368045 TIRAPP58753 221 aa10.35□□□□□ -0.75
CD48-201ENST00000368045 CEMP1Q6PRD7 247 aaPredicted RBP10.35□□□□□ -0.75
CD48-201ENST00000368045 Q96MF0 132 aa10.34□□□□□ -0.75
CD48-201ENST00000368045 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.34□□□□□ -0.75
CD48-201ENST00000368045 IGLV5-45A0A087WSX0 123 aa10.34□□□□□ -0.75
CD48-201ENST00000368045 IGKV2-29A2NJV5 120 aaPredicted RBP10.34□□□□□ -0.75
CD48-201ENST00000368045 KRTAP10-9P60411 292 aa10.34□□□□□ -0.75
CD48-201ENST00000368045 SMAGPQ0VAQ4 97 aa10.34□□□□□ -0.75
CD48-201ENST00000368045 MIAQ16674 131 aa10.34□□□□□ -0.75
CD48-201ENST00000368045 ZFAND6Q6FIF0 208 aa10.34□□□□□ -0.75
CD48-201ENST00000368045 Q6ZUT4 128 aa10.34□□□□□ -0.75
CD48-201ENST00000368045 IL17DQ8TAD2 202 aa10.34□□□□□ -0.75
CD48-201ENST00000368045 GEMIN7Q9H840 131 aaKnown RBP10.34□□□□□ -0.75
CD48-201ENST00000368045 YAE1D1Q9NRH1 226 aa10.34□□□□□ -0.75
CD48-201ENST00000368045 TRBV30A0A0K0K1B3 111 aa10.33□□□□□ -0.76
CD48-201ENST00000368045 PRM2P04554 102 aa10.33□□□□□ -0.76
CD48-201ENST00000368045 LINC01600Q96MT4 127 aa10.33□□□□□ -0.76
CD48-201ENST00000368045 Q9UF83 564 aa10.33□□□□□ -0.76
CD48-201ENST00000368045 USP9YO00507 2555 aaPredicted RBP10.33□□□□□ -0.76
CD48-201ENST00000368045 TRAV8-3A0A0A6YYJ7 113 aa10.32□□□□□ -0.76
CD48-201ENST00000368045 PRB1P04280 392 aa10.32□□□□□ -0.76
CD48-201ENST00000368045 IFITM1P13164 125 aa10.32□□□□□ -0.76
CD48-201ENST00000368045 ATXN8Q156A1 80 aa10.32□□□□□ -0.76
CD48-201ENST00000368045 ODF3L2Q3SX64 289 aa10.32□□□□□ -0.76
CD48-201ENST00000368045 STHQ8IWL8 128 aa10.32□□□□□ -0.76
CD48-201ENST00000368045 CARD19Q96LW7 228 aa10.32□□□□□ -0.76
CD48-201ENST00000368045 CR1P17927 2039 aa10.32□□□□□ -0.76
CD48-201ENST00000368045 SLC25A20O43772 301 aa10.31□□□□□ -0.76
CD48-201ENST00000368045 FHL3Q13643 280 aa10.31□□□□□ -0.76
CD48-201ENST00000368045 Q1RN00 199 aa10.31□□□□□ -0.76
CD48-201ENST00000368045 Q6ZSV7 163 aa10.31□□□□□ -0.76
CD48-201ENST00000368045 CREBBPQ92793 2442 aa10.31□□□□□ -0.76
CD48-201ENST00000368045 ANKRD17O75179 2603 aaKnown RBP10.31□□□□□ -0.76
CD48-201ENST00000368045 ACACBO00763 2458 aa10.31□□□□□ -0.76
CD48-201ENST00000368045 TRBV10-1A0A0K0K1A3 114 aa10.31□□□□□ -0.76
CD48-201ENST00000368045 RNASE13Q5GAN3 156 aaKnown RBP10.31□□□□□ -0.76
CD48-201ENST00000368045 ANKRD29Q8N6D5 301 aa10.31□□□□□ -0.76
CD48-201ENST00000368045 CDIP1Q9H305 208 aa10.31□□□□□ -0.76
CD48-201ENST00000368045 ADARB2-AS1A8MUL3 147 aa10.3□□□□□ -0.76
CD48-201ENST00000368045 SPINK8P0C7L1 97 aa10.3□□□□□ -0.76
CD48-201ENST00000368045 FAM19A3Q7Z5A8 133 aa10.3□□□□□ -0.76
CD48-201ENST00000368045 KRTAP1-3Q8IUG1 177 aa10.3□□□□□ -0.76
CD48-201ENST00000368045 ZNF843Q8N446 348 aa10.3□□□□□ -0.76
CD48-201ENST00000368045 XCL2Q9UBD3 114 aa10.3□□□□□ -0.76
CD48-201ENST00000368045 CELSR2Q9HCU4 2923 aa10.3□□□□□ -0.76
CD48-201ENST00000368045 C9JAW5 83 aa10.29□□□□□ -0.76
CD48-201ENST00000368045 NDUFA1O15239 70 aa10.29□□□□□ -0.76
CD48-201ENST00000368045 PRSS2P07478 247 aa10.29□□□□□ -0.76
CD48-201ENST00000368045 CMC4P56277 68 aaPredicted RBP10.29□□□□□ -0.76
CD48-201ENST00000368045 DGAT2L7PQ6IED9 249 aa10.29□□□□□ -0.76
CD48-201ENST00000368045 C1orf158Q8N1D5 194 aa10.29□□□□□ -0.76
CD48-201ENST00000368045 CSDC2Q9Y534 153 aaKnown RBP10.29□□□□□ -0.76
CD48-201ENST00000368045 MYO18BQ8IUG5 2567 aa10.29□□□□□ -0.76
CD48-201ENST00000368045 IGHV3-38A0A0C4DH36 116 aa10.29□□□□□ -0.76
CD48-201ENST00000368045 TMEM262E9PQX1 116 aa10.29□□□□□ -0.76
CD48-201ENST00000368045 H7C2G1 150 aa10.29□□□□□ -0.76
CD48-201ENST00000368045 HERVK_113P63121 156 aa10.29□□□□□ -0.76
CD48-201ENST00000368045 ADAMTSL4-AS1Q5T5F5 129 aa10.29□□□□□ -0.76
CD48-201ENST00000368045 BBC3Q96PG8 261 aaPredicted RBP10.29□□□□□ -0.76
CD48-201ENST00000368045 SORL1Q92673 2214 aa10.28□□□□□ -0.76
CD48-201ENST00000368045 RPL36AP83881 106 aaKnown RBP10.28□□□□□ -0.76
CD48-201ENST00000368045 DAZ2Q13117 558 aaKnown RBP10.28□□□□□ -0.76
CD48-201ENST00000368045 LINC01620Q4KN68 170 aa10.28□□□□□ -0.76
CD48-201ENST00000368045 DAZ4Q86SG3 579 aaKnown RBP10.28□□□□□ -0.76
CD48-201ENST00000368045 RPL36ALQ969Q0 106 aaKnown RBP10.28□□□□□ -0.76
CD48-201ENST00000368045 DAZ3Q9NR90 486 aaKnown RBP10.28□□□□□ -0.76
CD48-201ENST00000368045 TRGV1A0A0A0MS02 117 aa10.27□□□□□ -0.77
CD48-201ENST00000368045 TRAV4A0A0B4J268 109 aa10.27□□□□□ -0.77
CD48-201ENST00000368045 IGLV5-39A0A0G2JS06 123 aa10.27□□□□□ -0.77
CD48-201ENST00000368045 DNAJC9-AS1A6NH13 148 aa10.27□□□□□ -0.77
CD48-201ENST00000368045 CCL24O00175 119 aa10.27□□□□□ -0.77
CD48-201ENST00000368045 TRIAP1O43715 76 aa10.27□□□□□ -0.77
CD48-201ENST00000368045 CDKN2A-AS1Q9UH64 79 aa10.27□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 65.2 ms