RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 TMEM263Q8WUH6 116 aaKnown RBP9.66□□□□□ -0.86
COL6A3-203ENST00000353578 ZMAT4Q9H898 229 aa9.66□□□□□ -0.86
COL6A3-203ENST00000353578 CCKP06307 115 aa9.66□□□□□ -0.86
COL6A3-203ENST00000353578 GNRH2O43555 120 aa9.66□□□□□ -0.86
COL6A3-203ENST00000353578 TFF1P04155 84 aa9.66□□□□□ -0.86
COL6A3-203ENST00000353578 IGHV3-38A0A0C4DH36 116 aa9.66□□□□□ -0.86
COL6A3-203ENST00000353578 LRRK2Q5S007 2527 aa9.66□□□□□ -0.86
COL6A3-203ENST00000353578 IGLV2-8P01709 118 aa9.66□□□□□ -0.86
COL6A3-203ENST00000353578 LINC00205P59089 165 aa9.65□□□□□ -0.86
COL6A3-203ENST00000353578 DEFB105AQ8NG35 78 aa9.65□□□□□ -0.86
COL6A3-203ENST00000353578 IGHV4-28A0A0C4DH34 117 aa9.65□□□□□ -0.87
COL6A3-203ENST00000353578 Q8N976 141 aa9.65□□□□□ -0.87
COL6A3-203ENST00000353578 RPL28P46779 137 aaKnown RBP9.64□□□□□ -0.87
COL6A3-203ENST00000353578 Q9HAA7 133 aa9.64□□□□□ -0.87
COL6A3-203ENST00000353578 SP5Q6BEB4 398 aaPredicted RBP9.64□□□□□ -0.87
COL6A3-203ENST00000353578 TTTY13Q9BZ97 58 aa9.64□□□□□ -0.87
COL6A3-203ENST00000353578 A0A1W2PRX2 142 aa9.64□□□□□ -0.87
COL6A3-203ENST00000353578 H0Y9J4 135 aa9.64□□□□□ -0.87
COL6A3-203ENST00000353578 TP53TG3Q9ULZ0 132 aa9.64□□□□□ -0.87
COL6A3-203ENST00000353578 PATE2Q6UY27 113 aa9.64□□□□□ -0.87
COL6A3-203ENST00000353578 LINC00574Q9H8X3 128 aa9.64□□□□□ -0.87
COL6A3-203ENST00000353578 CTSGP08311 255 aa9.64□□□□□ -0.87
COL6A3-203ENST00000353578 HOXB4P17483 251 aaPredicted RBP9.64□□□□□ -0.87
COL6A3-203ENST00000353578 UBE2D1P51668 147 aa9.64□□□□□ -0.87
COL6A3-203ENST00000353578 ESRGQ1W209 222 aa9.64□□□□□ -0.87
COL6A3-203ENST00000353578 SPAG11BQ08648 103 aa9.63□□□□□ -0.87
COL6A3-203ENST00000353578 C14orf177Q52M58 125 aa9.63□□□□□ -0.87
COL6A3-203ENST00000353578 RNF185Q96GF1 192 aa9.63□□□□□ -0.87
COL6A3-203ENST00000353578 CCDC140Q96MF4 163 aa9.63□□□□□ -0.87
COL6A3-203ENST00000353578 PATE3B3GLJ2 98 aa9.63□□□□□ -0.87
COL6A3-203ENST00000353578 SERTAD4-AS1Q5TG53 156 aa9.63□□□□□ -0.87
COL6A3-203ENST00000353578 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP9.63□□□□□ -0.87
COL6A3-203ENST00000353578 B9D2Q9BPU9 175 aa9.63□□□□□ -0.87
COL6A3-203ENST00000353578 RSPO1Q2MKA7 263 aaPredicted RBP9.62□□□□□ -0.87
COL6A3-203ENST00000353578 TRBV6-5A0A0K0K1A5 114 aa9.62□□□□□ -0.87
COL6A3-203ENST00000353578 DEFB104AQ8WTQ1 72 aa9.62□□□□□ -0.87
COL6A3-203ENST00000353578 SETD2Q9BYW2 2564 aaPredicted RBP9.62□□□□□ -0.87
COL6A3-203ENST00000353578 ZNF22P17026 224 aaPredicted RBP9.62□□□□□ -0.87
COL6A3-203ENST00000353578 PRB4P10163 310 aaPredicted RBP9.62□□□□□ -0.87
COL6A3-203ENST00000353578 SNURFQ9Y675 71 aa9.62□□□□□ -0.87
COL6A3-203ENST00000353578 GPHB5Q86YW7 130 aa9.61□□□□□ -0.87
COL6A3-203ENST00000353578 A0A1B0GW54 56 aa9.61□□□□□ -0.87
COL6A3-203ENST00000353578 MSRB1Q9NZV6 116 aa9.61□□□□□ -0.87
COL6A3-203ENST00000353578 IGHV4-4A0A075B6R2 117 aa9.61□□□□□ -0.87
COL6A3-203ENST00000353578 TFF2Q03403 129 aa9.61□□□□□ -0.87
COL6A3-203ENST00000353578 ZFYVE26Q68DK2 2539 aa9.61□□□□□ -0.87
COL6A3-203ENST00000353578 GDF5OSQ5U4N7 250 aa9.61□□□□□ -0.87
COL6A3-203ENST00000353578 PINLYPA6NC86 204 aa9.6□□□□□ -0.87
COL6A3-203ENST00000353578 NCR3O14931 201 aa9.6□□□□□ -0.87
COL6A3-203ENST00000353578 NOP10Q9NPE3 64 aaKnown RBP9.6□□□□□ -0.87
COL6A3-203ENST00000353578 PLAC8L1A1L4L8 177 aa9.6□□□□□ -0.87
COL6A3-203ENST00000353578 TTC28Q96AY4 2481 aa9.6□□□□□ -0.87
COL6A3-203ENST00000353578 ZNF80P51504 273 aaPredicted RBP9.6□□□□□ -0.87
COL6A3-203ENST00000353578 C17orf77Q96MU5 243 aa9.6□□□□□ -0.87
COL6A3-203ENST00000353578 WFDC10AQ9H1F0 79 aa9.6□□□□□ -0.87
COL6A3-203ENST00000353578 LYPD2Q6UXB3 125 aa9.6□□□□□ -0.87
COL6A3-203ENST00000353578 CELA1Q9UNI1 258 aa9.59□□□□□ -0.87
COL6A3-203ENST00000353578 F8WDY8 70 aa9.59□□□□□ -0.87
COL6A3-203ENST00000353578 IGLV2-14P01704 120 aa9.59□□□□□ -0.87
COL6A3-203ENST00000353578 MSMBP08118 114 aa9.59□□□□□ -0.87
COL6A3-203ENST00000353578 GYPEP15421 78 aa9.59□□□□□ -0.87
COL6A3-203ENST00000353578 ZFAND2AQ8N6M9 145 aa9.59□□□□□ -0.87
COL6A3-203ENST00000353578 TPSG1Q9NRR2 321 aa9.59□□□□□ -0.87
COL6A3-203ENST00000353578 IGHV4OR15-8A0A075B7B6 117 aa9.59□□□□□ -0.87
COL6A3-203ENST00000353578 A0A087WW49 117 aa9.59□□□□□ -0.87
COL6A3-203ENST00000353578 IGKV1OR2-108A0A075B7D4 117 aa9.59□□□□□ -0.88
COL6A3-203ENST00000353578 C9orf85Q96MD7 179 aa9.58□□□□□ -0.88
COL6A3-203ENST00000353578 SEM1Q6ZVN7 128 aa9.58□□□□□ -0.88
COL6A3-203ENST00000353578 hDV103S1A0JD37 113 aa9.57□□□□□ -0.88
COL6A3-203ENST00000353578 IGFL3Q6UXB1 125 aa9.57□□□□□ -0.88
COL6A3-203ENST00000353578 SHISA2Q6UWI4 295 aa9.57□□□□□ -0.88
COL6A3-203ENST00000353578 WT1P19544 449 aaPredicted RBP9.57□□□□□ -0.88
COL6A3-203ENST00000353578 PKD1L2Q7Z442 2459 aa9.57□□□□□ -0.88
COL6A3-203ENST00000353578 TRBV7-6A0A0J9YX20 115 aa9.57□□□□□ -0.88
COL6A3-203ENST00000353578 IGLV4-3A0A075B6K6 122 aa9.57□□□□□ -0.88
COL6A3-203ENST00000353578 A0A0G2JNJ9 132 aa9.56□□□□□ -0.88
COL6A3-203ENST00000353578 Q9UFV3 132 aa9.56□□□□□ -0.88
COL6A3-203ENST00000353578 MYCNOSP40205 109 aa9.56□□□□□ -0.88
COL6A3-203ENST00000353578 G3V318 75 aa9.56□□□□□ -0.88
COL6A3-203ENST00000353578 MRGPRG-AS1Q2M3A8 158 aa9.55□□□□□ -0.88
COL6A3-203ENST00000353578 EBI3Q14213 229 aa9.55□□□□□ -0.88
COL6A3-203ENST00000353578 IGKV2D-24A0A075B6R9 120 aa9.55□□□□□ -0.88
COL6A3-203ENST00000353578 DEFB112Q30KQ8 113 aa9.55□□□□□ -0.88
COL6A3-203ENST00000353578 NOTCH2Q04721 2471 aa9.54□□□□□ -0.88
COL6A3-203ENST00000353578 TMEM254Q8TBM7 123 aa9.54□□□□□ -0.88
COL6A3-203ENST00000353578 PPDPFQ9H3Y8 114 aa9.54□□□□□ -0.88
COL6A3-203ENST00000353578 IGLV2-23P01705 113 aa9.54□□□□□ -0.88
COL6A3-203ENST00000353578 FSTL3O95633 263 aa9.54□□□□□ -0.88
COL6A3-203ENST00000353578 C4orf48Q5BLP8 95 aa9.54□□□□□ -0.88
COL6A3-203ENST00000353578 MAPKAPK5-AS1Q8N8E1 139 aa9.54□□□□□ -0.88
COL6A3-203ENST00000353578 FN1P02751 2386 aaKnown RBP9.54□□□□□ -0.88
COL6A3-203ENST00000353578 HHLA3Q9XRX5 114 aa9.54□□□□□ -0.88
COL6A3-203ENST00000353578 C11orf53Q8IXP5 236 aa9.54□□□□□ -0.88
COL6A3-203ENST00000353578 PRB2P02812 416 aaPredicted RBP9.53□□□□□ -0.88
COL6A3-203ENST00000353578 ATP1A1-AS1Q5TC04 95 aa9.53□□□□□ -0.88
COL6A3-203ENST00000353578 SPART-AS1P0CW21 52 aa9.53□□□□□ -0.88
COL6A3-203ENST00000353578 IGHV7-81A0A0B4J1V7 117 aa9.53□□□□□ -0.88
COL6A3-203ENST00000353578 PRB1P04280 392 aa9.53□□□□□ -0.88
COL6A3-203ENST00000353578 DKK4Q9UBT3 224 aa9.53□□□□□ -0.88
COL6A3-203ENST00000353578 INSL3P51460 131 aa9.53□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms