RNA–Protein interactions for RNA: ENST00000351487.5

UPF3A-201, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

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Gene UPF3A, Length 2,235 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-201ENST00000351487 DNAJC30Q96LL9 226 aa16.06■□□□□ 0.16
UPF3A-201ENST00000351487 C21orf62-AS1Q17RA5 79 aa16.05■□□□□ 0.16
UPF3A-201ENST00000351487 CHCHD7Q9BUK0 85 aa16.05■□□□□ 0.16
UPF3A-201ENST00000351487 Q9UF83 564 aa16.05■□□□□ 0.16
UPF3A-201ENST00000351487 RS1O15537 224 aa16.04■□□□□ 0.16
UPF3A-201ENST00000351487 TSPAN13O95857 204 aa16.04■□□□□ 0.16
UPF3A-201ENST00000351487 NDUFA11Q86Y39 141 aa16.04■□□□□ 0.16
UPF3A-201ENST00000351487 TEX48A0A1B0GUV7 120 aa16.04■□□□□ 0.16
UPF3A-201ENST00000351487 ESM1Q9NQ30 184 aa16.03■□□□□ 0.16
UPF3A-201ENST00000351487 SPANXA1Q9NS26 97 aa16.03■□□□□ 0.16
UPF3A-201ENST00000351487 PRO0461Q9UI25 63 aa16.03■□□□□ 0.16
UPF3A-201ENST00000351487 RPL24P83731 157 aaKnown RBP16.03■□□□□ 0.16
UPF3A-201ENST00000351487 WFDC2Q14508 124 aa16.03■□□□□ 0.16
UPF3A-201ENST00000351487 EPG5Q9HCE0 2579 aa16.02■□□□□ 0.16
UPF3A-201ENST00000351487 CCL24O00175 119 aa16.02■□□□□ 0.15
UPF3A-201ENST00000351487 APOMO95445 188 aa16.02■□□□□ 0.15
UPF3A-201ENST00000351487 GAGE13Q4V321 117 aa16.02■□□□□ 0.15
UPF3A-201ENST00000351487 UBE2D4Q9Y2X8 147 aa16.02■□□□□ 0.15
UPF3A-201ENST00000351487 ZNF469Q96JG9 3925 aaPredicted RBP16.01■□□□□ 0.15
UPF3A-201ENST00000351487 UBE2D3P61077 147 aa16.01■□□□□ 0.15
UPF3A-201ENST00000351487 UBE2D2P62837 147 aa16.01■□□□□ 0.15
UPF3A-201ENST00000351487 IL17DQ8TAD2 202 aa16.01■□□□□ 0.15
UPF3A-201ENST00000351487 XCL2Q9UBD3 114 aa16.01■□□□□ 0.15
UPF3A-201ENST00000351487 SONP18583 2426 aaKnown RBP16.01■□□□□ 0.15
UPF3A-201ENST00000351487 CFC1BP0CG36 223 aa16■□□□□ 0.15
UPF3A-201ENST00000351487 CFC1P0CG37 223 aa16■□□□□ 0.15
UPF3A-201ENST00000351487 CEMP1Q6PRD7 247 aaPredicted RBP16■□□□□ 0.15
UPF3A-201ENST00000351487 STHQ8IWL8 128 aa16■□□□□ 0.15
UPF3A-201ENST00000351487 C1orf158Q8N1D5 194 aa15.99■□□□□ 0.15
UPF3A-201ENST00000351487 IGHV3-64A0A075B6Q5 118 aa15.99■□□□□ 0.15
UPF3A-201ENST00000351487 A0A1W2PRX2 142 aa15.98■□□□□ 0.15
UPF3A-201ENST00000351487 IGHV3-30-3P0DP02 117 aa15.98■□□□□ 0.15
UPF3A-201ENST00000351487 AZU1P20160 251 aa15.98■□□□□ 0.15
UPF3A-201ENST00000351487 LYRM7Q5U5X0 104 aa15.98■□□□□ 0.15
UPF3A-201ENST00000351487 C10orf126Q8N4M7 172 aa15.98■□□□□ 0.15
UPF3A-201ENST00000351487 C11orf44Q8N8P7 122 aa15.98■□□□□ 0.15
UPF3A-201ENST00000351487 TIMM21Q9BVV7 248 aa15.98■□□□□ 0.15
UPF3A-201ENST00000351487 TINCRA0A1B0GVN0 87 aa15.97■□□□□ 0.15
UPF3A-201ENST00000351487 COTL1Q14019 142 aa15.97■□□□□ 0.15
UPF3A-201ENST00000351487 AKAP9Q99996 3911 aa15.97■□□□□ 0.15
UPF3A-201ENST00000351487 TMEM238C9JI98 176 aa15.96■□□□□ 0.15
UPF3A-201ENST00000351487 CHD6Q8TD26 2715 aa15.96■□□□□ 0.15
UPF3A-201ENST00000351487 IGKV2D-29A0A075B6S2 120 aaPredicted RBP15.95■□□□□ 0.14
UPF3A-201ENST00000351487 IGKV2-29A2NJV5 120 aaPredicted RBP15.95■□□□□ 0.14
UPF3A-201ENST00000351487 KRTAP1-1Q07627 177 aa15.95■□□□□ 0.14
UPF3A-201ENST00000351487 FLNAP21333 2647 aaKnown RBP15.95■□□□□ 0.14
UPF3A-201ENST00000351487 IGHV1-58A0A0C4DH39 117 aa15.95■□□□□ 0.14
UPF3A-201ENST00000351487 RNASE13Q5GAN3 156 aaKnown RBP15.95■□□□□ 0.14
UPF3A-201ENST00000351487 CITED2Q99967 270 aaPredicted RBP15.95■□□□□ 0.14
UPF3A-201ENST00000351487 PRO1854Q9UHT4 67 aa15.95■□□□□ 0.14
UPF3A-201ENST00000351487 TSSC4Q9Y5U2 329 aaPredicted RBP15.95■□□□□ 0.14
UPF3A-201ENST00000351487 WNK1Q9H4A3 2382 aa15.95■□□□□ 0.14
UPF3A-201ENST00000351487 LOC107984156A0A0G2JMH3 177 aa15.94■□□□□ 0.14
UPF3A-201ENST00000351487 A0A0J9YXY3 114 aa15.94■□□□□ 0.14
UPF3A-201ENST00000351487 ETDBQ3ZM63 59 aa15.94■□□□□ 0.14
UPF3A-201ENST00000351487 Q6ZUT4 128 aa15.94■□□□□ 0.14
UPF3A-201ENST00000351487 ARL17AQ8IVW1 177 aa15.94■□□□□ 0.14
UPF3A-201ENST00000351487 IGHV3-38A0A0C4DH36 116 aa15.94■□□□□ 0.14
UPF3A-201ENST00000351487 A4D1N5 150 aa15.93■□□□□ 0.14
UPF3A-201ENST00000351487 MTURNQ8N3F0 131 aa15.93■□□□□ 0.14
UPF3A-201ENST00000351487 C16orf95Q9H693 158 aa15.93■□□□□ 0.14
UPF3A-201ENST00000351487 SH2D6Q7Z4S9 175 aa15.92■□□□□ 0.14
UPF3A-201ENST00000351487 TRAV8-3A0A0A6YYJ7 113 aa15.92■□□□□ 0.14
UPF3A-201ENST00000351487 A0A0B4J2C4 111 aa15.92■□□□□ 0.14
UPF3A-201ENST00000351487 LINC01006Q8NI28 216 aa15.92■□□□□ 0.14
UPF3A-201ENST00000351487 IGHV3OR16-12A0A075B7B8 117 aa15.91■□□□□ 0.14
UPF3A-201ENST00000351487 J3QR89 54 aa15.91■□□□□ 0.14
UPF3A-201ENST00000351487 RNASE1P07998 156 aaKnown RBP15.91■□□□□ 0.14
UPF3A-201ENST00000351487 VSIG2Q96IQ7 327 aa15.91■□□□□ 0.14
UPF3A-201ENST00000351487 TMEM263Q8WUH6 116 aaKnown RBP15.91■□□□□ 0.14
UPF3A-201ENST00000351487 LITAFQ99732 161 aa15.91■□□□□ 0.14
UPF3A-201ENST00000351487 TRBV20-1A0A075B6N2 111 aa15.9■□□□□ 0.14
UPF3A-201ENST00000351487 TRGV1A0A0A0MS02 117 aa15.9■□□□□ 0.14
UPF3A-201ENST00000351487 EIF4EBP3O60516 100 aaPredicted RBP15.9■□□□□ 0.14
UPF3A-201ENST00000351487 PSMB2P49721 201 aa15.9■□□□□ 0.14
UPF3A-201ENST00000351487 SFTA2Q6UW10 78 aa15.9■□□□□ 0.14
UPF3A-201ENST00000351487 MUSTN1Q8IVN3 82 aa15.9■□□□□ 0.14
UPF3A-201ENST00000351487 CMC4P56277 68 aaPredicted RBP15.9■□□□□ 0.14
UPF3A-201ENST00000351487 CCDC168Q8NDH2 2452 aa15.89■□□□□ 0.13
UPF3A-201ENST00000351487 TRBV10-1A0A0K0K1A3 114 aa15.88■□□□□ 0.13
UPF3A-201ENST00000351487 SMCPP49901 116 aaPredicted RBP15.88■□□□□ 0.13
UPF3A-201ENST00000351487 HIST2H2BCQ6DN03 193 aa15.88■□□□□ 0.13
UPF3A-201ENST00000351487 IGLV5-45A0A087WSX0 123 aa15.88■□□□□ 0.13
UPF3A-201ENST00000351487 TRAV16A0A0A6YYK6 109 aaPredicted RBP15.88■□□□□ 0.13
UPF3A-201ENST00000351487 NDUFA12Q9UI09 145 aa15.88■□□□□ 0.13
UPF3A-201ENST00000351487 IGHV3-33P01772 117 aa15.87■□□□□ 0.13
UPF3A-201ENST00000351487 ATP6V0E2Q8NHE4 81 aa15.87■□□□□ 0.13
UPF3A-201ENST00000351487 TRAV4A0A0B4J268 109 aa15.87■□□□□ 0.13
UPF3A-201ENST00000351487 TCL1BO95988 128 aa15.87■□□□□ 0.13
UPF3A-201ENST00000351487 TIRAPP58753 221 aa15.87■□□□□ 0.13
UPF3A-201ENST00000351487 FAM110AQ9BQ89 295 aa15.87■□□□□ 0.13
UPF3A-201ENST00000351487 GEMIN7Q9H840 131 aaKnown RBP15.87■□□□□ 0.13
UPF3A-201ENST00000351487 ADARB2-AS1A8MUL3 147 aa15.86■□□□□ 0.13
UPF3A-201ENST00000351487 K7EQD1 137 aa15.86■□□□□ 0.13
UPF3A-201ENST00000351487 Q6ZTI0 123 aa15.86■□□□□ 0.13
UPF3A-201ENST00000351487 SPANXDQ9BXN6 97 aa15.86■□□□□ 0.13
UPF3A-201ENST00000351487 YAE1D1Q9NRH1 226 aa15.86■□□□□ 0.13
UPF3A-201ENST00000351487 SPANXCQ9NY87 97 aa15.86■□□□□ 0.13
UPF3A-201ENST00000351487 NBPF19A0A087WUL8 3843 aa15.86■□□□□ 0.13
UPF3A-201ENST00000351487 SPINK8P0C7L1 97 aa15.86■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms