RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 ZNF22P17026 224 aaPredicted RBP11.18□□□□□ -0.62
UPF3B-202ENST00000345865 SRSF9Q13242 221 aaKnown RBP eCLIP11.18□□□□□ -0.62
UPF3B-202ENST00000345865 RRN3P1Q2M238 152 aa11.18□□□□□ -0.62
UPF3B-202ENST00000345865 PTH2Q96A98 100 aa11.18□□□□□ -0.62
UPF3B-202ENST00000345865 HELZ2Q9BYK8 2649 aaKnown RBP11.18□□□□□ -0.62
UPF3B-202ENST00000345865 J3QQQ9 107 aa11.18□□□□□ -0.62
UPF3B-202ENST00000345865 C1orf158Q8N1D5 194 aa11.18□□□□□ -0.62
UPF3B-202ENST00000345865 VCX2Q9H322 139 aa11.18□□□□□ -0.62
UPF3B-202ENST00000345865 NOTCH3Q9UM47 2321 aa11.18□□□□□ -0.62
UPF3B-202ENST00000345865 BEAN1Q3B7T3 259 aa11.17□□□□□ -0.62
UPF3B-202ENST00000345865 IGHV3-64A0A075B6Q5 118 aa11.17□□□□□ -0.62
UPF3B-202ENST00000345865 RHODO00212 210 aa11.17□□□□□ -0.62
UPF3B-202ENST00000345865 UBE2D1P51668 147 aa11.17□□□□□ -0.62
UPF3B-202ENST00000345865 RNASE13Q5GAN3 156 aaKnown RBP11.17□□□□□ -0.62
UPF3B-202ENST00000345865 CHCHD7Q9BUK0 85 aa11.17□□□□□ -0.62
UPF3B-202ENST00000345865 PYGO1Q9Y3Y4 419 aa11.17□□□□□ -0.62
UPF3B-202ENST00000345865 IGHV3OR16-12A0A075B7B8 117 aa11.16□□□□□ -0.62
UPF3B-202ENST00000345865 TEX29Q8N6K0 151 aa11.16□□□□□ -0.62
UPF3B-202ENST00000345865 LINC01006Q8NI28 216 aa11.16□□□□□ -0.62
UPF3B-202ENST00000345865 CLUHP3Q96NS8 147 aa11.16□□□□□ -0.62
UPF3B-202ENST00000345865 TRAV25A0A0B4J276 109 aa11.15□□□□□ -0.62
UPF3B-202ENST00000345865 IGHV3-38A0A0C4DH36 116 aa11.15□□□□□ -0.62
UPF3B-202ENST00000345865 IGHV3-53P01767 116 aa11.15□□□□□ -0.62
UPF3B-202ENST00000345865 STHQ8IWL8 128 aa11.15□□□□□ -0.62
UPF3B-202ENST00000345865 SLC25A29Q8N8R3 303 aa11.15□□□□□ -0.62
UPF3B-202ENST00000345865 K7ERU9 68 aa11.15□□□□□ -0.62
UPF3B-202ENST00000345865 SPXQ9BT56 116 aa11.15□□□□□ -0.62
UPF3B-202ENST00000345865 H3BMG7 143 aa11.14□□□□□ -0.63
UPF3B-202ENST00000345865 RS1O15537 224 aa11.14□□□□□ -0.63
UPF3B-202ENST00000345865 IGHV3-30P01768 117 aa11.14□□□□□ -0.63
UPF3B-202ENST00000345865 IGHV3-30-5P0DP03 117 aa11.14□□□□□ -0.63
UPF3B-202ENST00000345865 YAE1D1Q9NRH1 226 aa11.14□□□□□ -0.63
UPF3B-202ENST00000345865 PGPEP1Q9NXJ5 209 aa11.14□□□□□ -0.63
UPF3B-202ENST00000345865 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.14□□□□□ -0.63
UPF3B-202ENST00000345865 IGKV2-29A2NJV5 120 aaPredicted RBP11.14□□□□□ -0.63
UPF3B-202ENST00000345865 LEPROTO15243 131 aa11.14□□□□□ -0.63
UPF3B-202ENST00000345865 LGALS3P17931 250 aaKnown RBP11.14□□□□□ -0.63
UPF3B-202ENST00000345865 SPANXB1Q9NS25 103 aaPredicted RBP11.13□□□□□ -0.63
UPF3B-202ENST00000345865 UNC79Q9P2D8 2635 aa11.13□□□□□ -0.63
UPF3B-202ENST00000345865 IL17DQ8TAD2 202 aa11.13□□□□□ -0.63
UPF3B-202ENST00000345865 VPS25Q9BRG1 176 aa11.13□□□□□ -0.63
UPF3B-202ENST00000345865 UBE2D4Q9Y2X8 147 aa11.13□□□□□ -0.63
UPF3B-202ENST00000345865 MRPS36P82909 103 aaKnown RBP11.12□□□□□ -0.63
UPF3B-202ENST00000345865 TSSC4Q9Y5U2 329 aaPredicted RBP11.12□□□□□ -0.63
UPF3B-202ENST00000345865 TMEM238LA0A1B0GVL6 79 aa11.12□□□□□ -0.63
UPF3B-202ENST00000345865 A6NJY4 79 aa11.12□□□□□ -0.63
UPF3B-202ENST00000345865 APOMO95445 188 aa11.12□□□□□ -0.63
UPF3B-202ENST00000345865 RNASE1P07998 156 aaKnown RBP11.12□□□□□ -0.63
UPF3B-202ENST00000345865 G3V4G9 280 aa11.11□□□□□ -0.63
UPF3B-202ENST00000345865 PCP4P48539 62 aa11.11□□□□□ -0.63
UPF3B-202ENST00000345865 WFDC2Q14508 124 aa11.11□□□□□ -0.63
UPF3B-202ENST00000345865 MTURNQ8N3F0 131 aa11.11□□□□□ -0.63
UPF3B-202ENST00000345865 WFDC10AQ9H1F0 79 aa11.11□□□□□ -0.63
UPF3B-202ENST00000345865 KMT2BQ9UMN6 2715 aaPredicted RBP11.11□□□□□ -0.63
UPF3B-202ENST00000345865 TSPAN13O95857 204 aa11.1□□□□□ -0.63
UPF3B-202ENST00000345865 GIG44P09565 113 aaPredicted RBP11.1□□□□□ -0.63
UPF3B-202ENST00000345865 SFTA2Q6UW10 78 aa11.1□□□□□ -0.63
UPF3B-202ENST00000345865 NDUFA11Q86Y39 141 aa11.1□□□□□ -0.63
UPF3B-202ENST00000345865 C10orf126Q8N4M7 172 aa11.1□□□□□ -0.63
UPF3B-202ENST00000345865 C16orf95Q9H693 158 aa11.1□□□□□ -0.63
UPF3B-202ENST00000345865 TRGV1A0A0A0MS02 117 aa11.1□□□□□ -0.63
UPF3B-202ENST00000345865 TRAV8-3A0A0A6YYJ7 113 aa11.1□□□□□ -0.63
UPF3B-202ENST00000345865 CFC1BP0CG36 223 aa11.1□□□□□ -0.63
UPF3B-202ENST00000345865 CFC1P0CG37 223 aa11.1□□□□□ -0.63
UPF3B-202ENST00000345865 PLA2G2AP14555 144 aa11.1□□□□□ -0.63
UPF3B-202ENST00000345865 IGHV3-30-3P0DP02 117 aa11.09□□□□□ -0.63
UPF3B-202ENST00000345865 CRYBA4P53673 196 aa11.09□□□□□ -0.63
UPF3B-202ENST00000345865 C21orf62-AS1Q17RA5 79 aa11.09□□□□□ -0.63
UPF3B-202ENST00000345865 Q6ZUT4 128 aa11.09□□□□□ -0.63
UPF3B-202ENST00000345865 DNAJC30Q96LL9 226 aa11.09□□□□□ -0.63
UPF3B-202ENST00000345865 TEX48A0A1B0GUV7 120 aa11.09□□□□□ -0.63
UPF3B-202ENST00000345865 Q6ZTI0 123 aa11.09□□□□□ -0.63
UPF3B-202ENST00000345865 PRO0461Q9UI25 63 aa11.09□□□□□ -0.63
UPF3B-202ENST00000345865 ADARB2-AS1A8MUL3 147 aa11.08□□□□□ -0.64
UPF3B-202ENST00000345865 EIF4EBP3O60516 100 aaPredicted RBP11.08□□□□□ -0.64
UPF3B-202ENST00000345865 SPANXA1Q9NS26 97 aa11.08□□□□□ -0.64
UPF3B-202ENST00000345865 RPL24P83731 157 aaKnown RBP11.08□□□□□ -0.64
UPF3B-202ENST00000345865 COTL1Q14019 142 aa11.08□□□□□ -0.64
UPF3B-202ENST00000345865 FASNP49327 2511 aaKnown RBP11.07□□□□□ -0.64
UPF3B-202ENST00000345865 C2CD3Q4AC94 2353 aa11.07□□□□□ -0.64
UPF3B-202ENST00000345865 A8MZ25 164 aa11.07□□□□□ -0.64
UPF3B-202ENST00000345865 F8W1H4 67 aa11.07□□□□□ -0.64
UPF3B-202ENST00000345865 TIMM21Q9BVV7 248 aa11.07□□□□□ -0.64
UPF3B-202ENST00000345865 C19orf73Q9NVV2 129 aa11.07□□□□□ -0.64
UPF3B-202ENST00000345865 A0A0J9YXY3 114 aa11.06□□□□□ -0.64
UPF3B-202ENST00000345865 TINCRA0A1B0GVN0 87 aa11.06□□□□□ -0.64
UPF3B-202ENST00000345865 SH2D6Q7Z4S9 175 aa11.06□□□□□ -0.64
UPF3B-202ENST00000345865 TMEM263Q8WUH6 116 aaKnown RBP11.06□□□□□ -0.64
UPF3B-202ENST00000345865 SMR3AQ99954 134 aa11.06□□□□□ -0.64
UPF3B-202ENST00000345865 A4D1N5 150 aa11.05□□□□□ -0.64
UPF3B-202ENST00000345865 J3QKU1 62 aa11.05□□□□□ -0.64
UPF3B-202ENST00000345865 IGLV1-51P01701 117 aa11.05□□□□□ -0.64
UPF3B-202ENST00000345865 UBE2D3P61077 147 aa11.05□□□□□ -0.64
UPF3B-202ENST00000345865 UBE2D2P62837 147 aa11.05□□□□□ -0.64
UPF3B-202ENST00000345865 GAGE13Q4V321 117 aa11.05□□□□□ -0.64
UPF3B-202ENST00000345865 IGHV1-58A0A0C4DH39 117 aa11.04□□□□□ -0.64
UPF3B-202ENST00000345865 LOC107984156A0A0G2JMH3 177 aa11.04□□□□□ -0.64
UPF3B-202ENST00000345865 PLAC8L1A1L4L8 177 aa11.04□□□□□ -0.64
UPF3B-202ENST00000345865 MUSTN1Q8IVN3 82 aa11.04□□□□□ -0.64
UPF3B-202ENST00000345865 ARL17AQ8IVW1 177 aa11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms