RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 SIGMAR1Q99720 223 aa14.1□□□□□ -0.15
COL9A3-201ENST00000343916 INSL3P51460 131 aa14.09□□□□□ -0.15
COL9A3-201ENST00000343916 XCL2Q9UBD3 114 aa14.09□□□□□ -0.15
COL9A3-201ENST00000343916 UNC79Q9P2D8 2635 aa14.09□□□□□ -0.15
COL9A3-201ENST00000343916 ZNF415Q09FC8 603 aa14.09□□□□□ -0.15
COL9A3-201ENST00000343916 SFTA2Q6UW10 78 aa14.09□□□□□ -0.15
COL9A3-201ENST00000343916 MRPL16Q9NX20 251 aaKnown RBP14.09□□□□□ -0.15
COL9A3-201ENST00000343916 PGPEP1Q9NXJ5 209 aa14.09□□□□□ -0.15
COL9A3-201ENST00000343916 PRO0461Q9UI25 63 aa14.09□□□□□ -0.15
COL9A3-201ENST00000343916 A0A1B0GWB2 263 aa14.08□□□□□ -0.15
COL9A3-201ENST00000343916 HERVK_113P61574 105 aa14.08□□□□□ -0.15
COL9A3-201ENST00000343916 C11orf72Q8NBR9 251 aa14.08□□□□□ -0.15
COL9A3-201ENST00000343916 CCL24O00175 119 aa14.08□□□□□ -0.16
COL9A3-201ENST00000343916 IGHV3OR16-12A0A075B7B8 117 aa14.07□□□□□ -0.16
COL9A3-201ENST00000343916 A8MWV9 139 aa14.07□□□□□ -0.16
COL9A3-201ENST00000343916 J3QR89 54 aa14.07□□□□□ -0.16
COL9A3-201ENST00000343916 CFAP126Q5VTH2 177 aa14.07□□□□□ -0.16
COL9A3-201ENST00000343916 CITED2Q99967 270 aaPredicted RBP14.07□□□□□ -0.16
COL9A3-201ENST00000343916 JMJD1CQ15652 2540 aa14.07□□□□□ -0.16
COL9A3-201ENST00000343916 KRTAP1-1Q07627 177 aa14.07□□□□□ -0.16
COL9A3-201ENST00000343916 CEMP1Q6PRD7 247 aaPredicted RBP14.07□□□□□ -0.16
COL9A3-201ENST00000343916 IGLV4-3A0A075B6K6 122 aa14.06□□□□□ -0.16
COL9A3-201ENST00000343916 INSP01308 110 aa14.06□□□□□ -0.16
COL9A3-201ENST00000343916 SRSF9Q13242 221 aaKnown RBP eCLIP14.06□□□□□ -0.169e-8■■□□□ 11.7
COL9A3-201ENST00000343916 TNFRSF18Q9Y5U5 241 aa14.06□□□□□ -0.16
COL9A3-201ENST00000343916 FHL3Q13643 280 aa14.06□□□□□ -0.16
COL9A3-201ENST00000343916 IGHV3-64A0A075B6Q5 118 aa14.05□□□□□ -0.16
COL9A3-201ENST00000343916 YAE1D1Q9NRH1 226 aa14.05□□□□□ -0.16
COL9A3-201ENST00000343916 RNASE13Q5GAN3 156 aaKnown RBP14.04□□□□□ -0.16
COL9A3-201ENST00000343916 TEX29Q8N6K0 151 aa14.04□□□□□ -0.16
COL9A3-201ENST00000343916 EDA2RQ9HAV5 297 aa14.04□□□□□ -0.16
COL9A3-201ENST00000343916 A0A0J9YXV3 536 aa14.04□□□□□ -0.16
COL9A3-201ENST00000343916 NFE4Q86UQ8 179 aa14.04□□□□□ -0.16
COL9A3-201ENST00000343916 STHQ8IWL8 128 aa14.04□□□□□ -0.16
COL9A3-201ENST00000343916 VCX2Q9H322 139 aa14.04□□□□□ -0.16
COL9A3-201ENST00000343916 A0A0J9YY99 117 aa14.03□□□□□ -0.16
COL9A3-201ENST00000343916 FAM104AQ969W3 186 aa14.03□□□□□ -0.16
COL9A3-201ENST00000343916 IGHV3-38A0A0C4DH36 116 aa14.03□□□□□ -0.16
COL9A3-201ENST00000343916 LINC01006Q8NI28 216 aa14.03□□□□□ -0.16
COL9A3-201ENST00000343916 J3QQQ9 107 aa14.02□□□□□ -0.16
COL9A3-201ENST00000343916 SPATA25Q9BR10 227 aa14.02□□□□□ -0.16
COL9A3-201ENST00000343916 LOC107984156A0A0G2JMH3 177 aa14.02□□□□□ -0.17
COL9A3-201ENST00000343916 APOMO95445 188 aa14.02□□□□□ -0.17
COL9A3-201ENST00000343916 ARL17AQ8IVW1 177 aa14.02□□□□□ -0.17
COL9A3-201ENST00000343916 AMELXQ99217 191 aa14.02□□□□□ -0.17
COL9A3-201ENST00000343916 HECTD1Q9ULT8 2610 aa14.01□□□□□ -0.17
COL9A3-201ENST00000343916 ZNF22P17026 224 aaPredicted RBP14.01□□□□□ -0.17
COL9A3-201ENST00000343916 SETXQ7Z333 2677 aaKnown RBP14.01□□□□□ -0.17
COL9A3-201ENST00000343916 C1orf158Q8N1D5 194 aa14.01□□□□□ -0.17
COL9A3-201ENST00000343916 TMEM223A0PJW6 202 aa14□□□□□ -0.17
COL9A3-201ENST00000343916 TSPAN13O95857 204 aa14□□□□□ -0.17
COL9A3-201ENST00000343916 PIK3CD-AS1Q5SR53 167 aa14□□□□□ -0.17
COL9A3-201ENST00000343916 TMEM238LA0A1B0GVL6 79 aa14□□□□□ -0.17
COL9A3-201ENST00000343916 A6NJY4 79 aa14□□□□□ -0.17
COL9A3-201ENST00000343916 RHODO00212 210 aa14□□□□□ -0.17
COL9A3-201ENST00000343916 LGALS3P17931 250 aaKnown RBP14□□□□□ -0.17
COL9A3-201ENST00000343916 PSMB2P49721 201 aa14□□□□□ -0.17
COL9A3-201ENST00000343916 SMCPP49901 116 aaPredicted RBP14□□□□□ -0.17
COL9A3-201ENST00000343916 IGKV2D-29A0A075B6S2 120 aaPredicted RBP13.99□□□□□ -0.17
COL9A3-201ENST00000343916 TRAV25A0A0B4J276 109 aa13.99□□□□□ -0.17
COL9A3-201ENST00000343916 IGKV2-29A2NJV5 120 aaPredicted RBP13.99□□□□□ -0.17
COL9A3-201ENST00000343916 UBE2D1P51668 147 aa13.99□□□□□ -0.17
COL9A3-201ENST00000343916 LINC00467Q9BRT7 94 aa13.99□□□□□ -0.17
COL9A3-201ENST00000343916 SPXQ9BT56 116 aa13.99□□□□□ -0.17
COL9A3-201ENST00000343916 FASNP49327 2511 aaKnown RBP13.99□□□□□ -0.17
COL9A3-201ENST00000343916 SCGB1A1P11684 91 aa13.99□□□□□ -0.17
COL9A3-201ENST00000343916 CHCHD7Q9BUK0 85 aa13.99□□□□□ -0.17
COL9A3-201ENST00000343916 ANK3Q12955 4377 aaKnown RBP13.98□□□□□ -0.17
COL9A3-201ENST00000343916 IGHV3-53P01767 116 aa13.98□□□□□ -0.17
COL9A3-201ENST00000343916 BEAN1Q3B7T3 259 aa13.98□□□□□ -0.17
COL9A3-201ENST00000343916 ZNF418Q8TF45 676 aaPredicted RBP13.98□□□□□ -0.17
COL9A3-201ENST00000343916 PTH2Q96A98 100 aa13.98□□□□□ -0.17
COL9A3-201ENST00000343916 WFDC10AQ9H1F0 79 aa13.98□□□□□ -0.17
COL9A3-201ENST00000343916 PYGO1Q9Y3Y4 419 aa13.98□□□□□ -0.17
COL9A3-201ENST00000343916 CIDEAO60543 219 aa13.97□□□□□ -0.17
COL9A3-201ENST00000343916 TRGV1A0A0A0MS02 117 aa13.96□□□□□ -0.17
COL9A3-201ENST00000343916 FOXI1Q12951 378 aa13.96□□□□□ -0.17
COL9A3-201ENST00000343916 SLC25A29Q8N8R3 303 aa13.96□□□□□ -0.17
COL9A3-201ENST00000343916 C1QTNF4Q9BXJ3 329 aa13.96□□□□□ -0.17
COL9A3-201ENST00000343916 LEPROTO15243 131 aa13.96□□□□□ -0.18
COL9A3-201ENST00000343916 RS1O15537 224 aa13.96□□□□□ -0.18
COL9A3-201ENST00000343916 RNASE1P07998 156 aaKnown RBP13.96□□□□□ -0.18
COL9A3-201ENST00000343916 CLUHP3Q96NS8 147 aa13.96□□□□□ -0.18
COL9A3-201ENST00000343916 IGHV3-30P01768 117 aa13.95□□□□□ -0.18
COL9A3-201ENST00000343916 IGHV3-30-5P0DP03 117 aa13.95□□□□□ -0.18
COL9A3-201ENST00000343916 UBE2D4Q9Y2X8 147 aa13.95□□□□□ -0.18
COL9A3-201ENST00000343916 C2CD3Q4AC94 2353 aa13.95□□□□□ -0.18
COL9A3-201ENST00000343916 TRAV8-3A0A0A6YYJ7 113 aa13.93□□□□□ -0.18
COL9A3-201ENST00000343916 NDUFA11Q86Y39 141 aa13.93□□□□□ -0.18
COL9A3-201ENST00000343916 ADARB2-AS1A8MUL3 147 aa13.93□□□□□ -0.18
COL9A3-201ENST00000343916 MRPS36P82909 103 aaKnown RBP13.93□□□□□ -0.18
COL9A3-201ENST00000343916 Q6ZTI0 123 aa13.93□□□□□ -0.18
COL9A3-201ENST00000343916 Q6ZUT4 128 aa13.93□□□□□ -0.18
COL9A3-201ENST00000343916 SMR3AQ99954 134 aa13.93□□□□□ -0.18
COL9A3-201ENST00000343916 UBE2D3P61077 147 aa13.92□□□□□ -0.18
COL9A3-201ENST00000343916 UBE2D2P62837 147 aa13.92□□□□□ -0.18
COL9A3-201ENST00000343916 IGHV3-30-3P0DP02 117 aa13.91□□□□□ -0.18
COL9A3-201ENST00000343916 C10orf126Q8N4M7 172 aa13.91□□□□□ -0.18
COL9A3-201ENST00000343916 IL17DQ8TAD2 202 aa13.91□□□□□ -0.18
COL9A3-201ENST00000343916 C16orf95Q9H693 158 aa13.91□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms