RNA–Protein interactions for RNA: ENST00000343060.4

HOXA1-201, Transcript of homeobox A1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXA1, Length 2,517 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1-201ENST00000343060 BPESC1Q9GZL8 116 aa7.05□□□□□ -1.28
HOXA1-201ENST00000343060 TIRAPP58753 221 aa7.04□□□□□ -1.28
HOXA1-201ENST00000343060 NPC2P61916 151 aa7.04□□□□□ -1.28
HOXA1-201ENST00000343060 BEAN1Q3B7T3 259 aa7.04□□□□□ -1.28
HOXA1-201ENST00000343060 C3orf22Q8N5N4 141 aa7.04□□□□□ -1.28
HOXA1-201ENST00000343060 K7ENP7 123 aa7.04□□□□□ -1.28
HOXA1-201ENST00000343060 TRACP01848 142 aa7.04□□□□□ -1.28
HOXA1-201ENST00000343060 CXCL5P42830 114 aa7.04□□□□□ -1.28
HOXA1-201ENST00000343060 PIK3CD-AS1Q5SR53 167 aa7.04□□□□□ -1.28
HOXA1-201ENST00000343060 PPDPFQ9H3Y8 114 aa7.04□□□□□ -1.28
HOXA1-201ENST00000343060 PRORYQ9H606 182 aa7.04□□□□□ -1.28
HOXA1-201ENST00000343060 IGLV5-39A0A0G2JS06 123 aa7.03□□□□□ -1.28
HOXA1-201ENST00000343060 UQCRQO14949 82 aa7.03□□□□□ -1.28
HOXA1-201ENST00000343060 SNRPD3P62318 126 aaKnown RBP7.03□□□□□ -1.28
HOXA1-201ENST00000343060 SPINK13Q1W4C9 94 aa7.03□□□□□ -1.28
HOXA1-201ENST00000343060 RNASE13Q5GAN3 156 aaKnown RBP7.03□□□□□ -1.28
HOXA1-201ENST00000343060 FAM222AQ5U5X8 452 aa7.03□□□□□ -1.28
HOXA1-201ENST00000343060 C5orf38Q86SI9 138 aa7.03□□□□□ -1.28
HOXA1-201ENST00000343060 LINC00308Q8TCZ7 52 aa7.03□□□□□ -1.28
HOXA1-201ENST00000343060 DNAJC30Q96LL9 226 aa7.03□□□□□ -1.28
HOXA1-201ENST00000343060 NDUFA7O95182 113 aa7.03□□□□□ -1.28
HOXA1-201ENST00000343060 DAND5Q8N907 189 aa7.03□□□□□ -1.28
HOXA1-201ENST00000343060 LINC00526Q96FQ7 95 aa7.03□□□□□ -1.28
HOXA1-201ENST00000343060 PEMTQ9UBM1 199 aa7.03□□□□□ -1.28
HOXA1-201ENST00000343060 C22orf24Q9Y442 160 aa7.02□□□□□ -1.29
HOXA1-201ENST00000343060 TLN1Q9Y490 2541 aaKnown RBP7.02□□□□□ -1.29
HOXA1-201ENST00000343060 GVINP1Q7Z2Y8 2422 aa7.02□□□□□ -1.29
HOXA1-201ENST00000343060 IGHV3OR16-10A0A075B7F0 116 aa7.02□□□□□ -1.29
HOXA1-201ENST00000343060 CDKN2A-AS1Q9UH64 79 aa7.02□□□□□ -1.29
HOXA1-201ENST00000343060 NACAE9PAV3 2078 aa7.02□□□□□ -1.29
HOXA1-201ENST00000343060 ABCA2Q9BZC7 2435 aa7.01□□□□□ -1.29
HOXA1-201ENST00000343060 IGKV3-20P01619 116 aa7.01□□□□□ -1.29
HOXA1-201ENST00000343060 RBMY1A1P0DJD3 496 aaKnown RBP7.01□□□□□ -1.29
HOXA1-201ENST00000343060 RBMY1CP0DJD4 496 aa7.01□□□□□ -1.29
HOXA1-201ENST00000343060 PROK1P58294 105 aa7.01□□□□□ -1.29
HOXA1-201ENST00000343060 HIST1H4AP62805 103 aaKnown RBP7.01□□□□□ -1.29
HOXA1-201ENST00000343060 CIRBPQ14011 172 aaKnown RBP7.01□□□□□ -1.29
HOXA1-201ENST00000343060 RBMY1FQ15415 496 aaKnown RBP7.01□□□□□ -1.29
HOXA1-201ENST00000343060 C9orf153Q5TBE3 101 aa7.01□□□□□ -1.29
HOXA1-201ENST00000343060 FAM19A3Q7Z5A8 133 aa7.01□□□□□ -1.29
HOXA1-201ENST00000343060 COPS9Q8WXC6 57 aa7.01□□□□□ -1.29
HOXA1-201ENST00000343060 NRGNQ92686 78 aa7.01□□□□□ -1.29
HOXA1-201ENST00000343060 LINC00467Q9BRT7 94 aa7.01□□□□□ -1.29
HOXA1-201ENST00000343060 A8MTW9 85 aa7.01□□□□□ -1.29
HOXA1-201ENST00000343060 DAZ2Q13117 558 aaKnown RBP7.01□□□□□ -1.29
HOXA1-201ENST00000343060 BRD3OSQ6XYD6 125 aa7.01□□□□□ -1.29
HOXA1-201ENST00000343060 DAZ4Q86SG3 579 aaKnown RBP7.01□□□□□ -1.29
HOXA1-201ENST00000343060 DUX5Q96PT3 197 aa7.01□□□□□ -1.29
HOXA1-201ENST00000343060 DAZ3Q9NR90 486 aaKnown RBP7.01□□□□□ -1.29
HOXA1-201ENST00000343060 LY6EQ16553 131 aa7□□□□□ -1.29
HOXA1-201ENST00000343060 SOSTDC1Q6X4U4 206 aa7□□□□□ -1.29
HOXA1-201ENST00000343060 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP7□□□□□ -1.29
HOXA1-201ENST00000343060 C3orf56Q8N813 242 aa7□□□□□ -1.29
HOXA1-201ENST00000343060 UBTD1Q9HAC8 227 aa7□□□□□ -1.29
HOXA1-201ENST00000343060 IGKV2D-29A0A075B6S2 120 aaPredicted RBP7□□□□□ -1.29
HOXA1-201ENST00000343060 IGKV2-29A2NJV5 120 aaPredicted RBP7□□□□□ -1.29
HOXA1-201ENST00000343060 H3BUX3 64 aa7□□□□□ -1.29
HOXA1-201ENST00000343060 BLCAPP62952 87 aa7□□□□□ -1.29
HOXA1-201ENST00000343060 DOPEY2Q9Y3R5 2298 aa7□□□□□ -1.29
HOXA1-201ENST00000343060 SPTBN1Q01082 2364 aaKnown RBP7□□□□□ -1.29
HOXA1-201ENST00000343060 A0A1B0GX51 115 aa6.99□□□□□ -1.29
HOXA1-201ENST00000343060 PSMB8P28062 276 aa6.99□□□□□ -1.29
HOXA1-201ENST00000343060 ZNF292O60281 2723 aa6.99□□□□□ -1.29
HOXA1-201ENST00000343060 Q6ZSN1 163 aa6.99□□□□□ -1.29
HOXA1-201ENST00000343060 Q8N2B8 174 aa6.99□□□□□ -1.29
HOXA1-201ENST00000343060 C2orf48Q96LS8 159 aa6.99□□□□□ -1.29
HOXA1-201ENST00000343060 Q9H8V8 135 aa6.99□□□□□ -1.29
HOXA1-201ENST00000343060 IGHV3-73A0A0B4J1V6 119 aa6.98□□□□□ -1.29
HOXA1-201ENST00000343060 INAFM2P0DMQ5 153 aa6.98□□□□□ -1.29
HOXA1-201ENST00000343060 LINC00694P0DN24 101 aa6.98□□□□□ -1.29
HOXA1-201ENST00000343060 COX7CP15954 63 aa6.98□□□□□ -1.29
HOXA1-201ENST00000343060 HERVK_113P63121 156 aa6.98□□□□□ -1.29
HOXA1-201ENST00000343060 LRRC75A-AS1Q8N1F1 130 aa6.98□□□□□ -1.29
HOXA1-201ENST00000343060 Q9UF83 564 aa6.98□□□□□ -1.29
HOXA1-201ENST00000343060 TMEM89A2RUT3 159 aa6.98□□□□□ -1.29
HOXA1-201ENST00000343060 IGHV3-53P01767 116 aa6.98□□□□□ -1.29
HOXA1-201ENST00000343060 BAALC-AS2P0C853 105 aa6.98□□□□□ -1.29
HOXA1-201ENST00000343060 IGHV4-38-2P0DP08 117 aa6.98□□□□□ -1.29
HOXA1-201ENST00000343060 CRYGAP11844 174 aa6.98□□□□□ -1.29
HOXA1-201ENST00000343060 ZNF625Q96I27 306 aaPredicted RBP6.98□□□□□ -1.29
HOXA1-201ENST00000343060 IGHV3OR16-12A0A075B7B8 117 aa6.97□□□□□ -1.29
HOXA1-201ENST00000343060 COX6A2Q02221 97 aa6.97□□□□□ -1.29
HOXA1-201ENST00000343060 ZNF415Q09FC8 603 aa6.97□□□□□ -1.29
HOXA1-201ENST00000343060 SVEP1Q4LDE5 3571 aa6.97□□□□□ -1.29
HOXA1-201ENST00000343060 SMIM1B2RUZ4 78 aa6.97□□□□□ -1.29
HOXA1-201ENST00000343060 LINC00242Q5T6M2 205 aa6.97□□□□□ -1.29
HOXA1-201ENST00000343060 FAM218AQ96MZ4 157 aa6.97□□□□□ -1.29
HOXA1-201ENST00000343060 PTPRQQ9UMZ3 2332 aa6.96□□□□□ -1.29
HOXA1-201ENST00000343060 CSDC2Q9Y534 153 aaKnown RBP6.96□□□□□ -1.29
HOXA1-201ENST00000343060 KNCNA6PVL3 124 aa6.95□□□□□ -1.3
HOXA1-201ENST00000343060 J3KT08 172 aa6.95□□□□□ -1.3
HOXA1-201ENST00000343060 ATOX1O00244 68 aa6.95□□□□□ -1.3
HOXA1-201ENST00000343060 PF4P02776 101 aa6.95□□□□□ -1.3
HOXA1-201ENST00000343060 RPL28P46779 137 aaKnown RBP6.95□□□□□ -1.3
HOXA1-201ENST00000343060 RPS28P62857 69 aaKnown RBP6.95□□□□□ -1.3
HOXA1-201ENST00000343060 ZFHX3Q15911 3703 aa6.94□□□□□ -1.3
HOXA1-201ENST00000343060 RBMY1BA6NDE4 496 aaKnown RBP6.94□□□□□ -1.3
HOXA1-201ENST00000343060 RBMY1EA6NEQ0 496 aaKnown RBP6.94□□□□□ -1.3
HOXA1-201ENST00000343060 F5H768 121 aa6.94□□□□□ -1.3
HOXA1-201ENST00000343060 RS1O15537 224 aa6.94□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 95.3 ms