RNA–Protein interactions for RNA: ENST00000342988.7

SMAD4-201, Transcript of SMAD family member 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SMAD4, Length 8,769 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-201ENST00000342988 IGKV1-17P01599 117 aa13.62□□□□□ -0.23
SMAD4-201ENST00000342988 ARTNQ5T4W7 220 aa13.62□□□□□ -0.23
SMAD4-201ENST00000342988 NFE4Q86UQ8 179 aa13.62□□□□□ -0.23
SMAD4-201ENST00000342988 C1orf158Q8N1D5 194 aa13.62□□□□□ -0.23
SMAD4-201ENST00000342988 CRIPAKQ8N1N5 446 aa13.62□□□□□ -0.23
SMAD4-201ENST00000342988 MUC6Q6W4X9 2439 aa13.62□□□□□ -0.23
SMAD4-201ENST00000342988 KAAG1Q9UBP8 84 aa13.62□□□□□ -0.23
SMAD4-201ENST00000342988 K7ENP7 123 aa13.62□□□□□ -0.23
SMAD4-201ENST00000342988 SMIM26A0A096LP01 95 aa13.61□□□□□ -0.23
SMAD4-201ENST00000342988 C11orf45Q8TAV5 145 aa13.61□□□□□ -0.23
SMAD4-201ENST00000342988 ACACBO00763 2458 aa13.61□□□□□ -0.23
SMAD4-201ENST00000342988 SNURFQ9Y675 71 aa13.61□□□□□ -0.23
SMAD4-201ENST00000342988 CTRLP40313 264 aa13.61□□□□□ -0.23
SMAD4-201ENST00000342988 SPRY2O43597 315 aa13.6□□□□□ -0.23
SMAD4-201ENST00000342988 ODF1Q14990 250 aa13.6□□□□□ -0.23
SMAD4-201ENST00000342988 ZNF726P1Q15940 193 aa13.6□□□□□ -0.23
SMAD4-201ENST00000342988 COA6Q5JTJ3 125 aaKnown RBP13.6□□□□□ -0.23
SMAD4-201ENST00000342988 J3QKU1 62 aa13.59□□□□□ -0.23
SMAD4-201ENST00000342988 C3orf84H3BNL1 204 aa13.59□□□□□ -0.23
SMAD4-201ENST00000342988 ZFAND3Q9H8U3 227 aa13.59□□□□□ -0.23
SMAD4-201ENST00000342988 ZFAND2AQ8N6M9 145 aa13.59□□□□□ -0.23
SMAD4-201ENST00000342988 TRBV6-1A0A0K0K1D8 114 aa13.59□□□□□ -0.23
SMAD4-201ENST00000342988 DEFB135Q30KP9 77 aa13.59□□□□□ -0.23
SMAD4-201ENST00000342988 LINC00474Q9P2X8 69 aa13.59□□□□□ -0.23
SMAD4-201ENST00000342988 LTBP1Q14766 1721 aa13.59□□□□□ -0.23
SMAD4-201ENST00000342988 IGHV4-30-4P0DP06 118 aa13.58□□□□□ -0.24
SMAD4-201ENST00000342988 IGHV4-31P0DP07 118 aa13.58□□□□□ -0.24
SMAD4-201ENST00000342988 LOXL1Q08397 574 aaPredicted RBP13.58□□□□□ -0.24
SMAD4-201ENST00000342988 WT1P19544 449 aaPredicted RBP13.58□□□□□ -0.24
SMAD4-201ENST00000342988 LRRC75A-AS1Q8N1F1 130 aa13.58□□□□□ -0.24
SMAD4-201ENST00000342988 TRBV7-6A0A0J9YX20 115 aa13.58□□□□□ -0.24
SMAD4-201ENST00000342988 IGF1P05019 195 aa13.58□□□□□ -0.24
SMAD4-201ENST00000342988 EPOPA6NHQ4 379 aa13.57□□□□□ -0.24
SMAD4-201ENST00000342988 IGHV4-38-2P0DP08 117 aa13.57□□□□□ -0.24
SMAD4-201ENST00000342988 REG3AQ06141 175 aa13.57□□□□□ -0.24
SMAD4-201ENST00000342988 TPSG1Q9NRR2 321 aa13.57□□□□□ -0.24
SMAD4-201ENST00000342988 IBA57-AS1B1ANH7 110 aa13.57□□□□□ -0.24
SMAD4-201ENST00000342988 CSRP3P50461 194 aa13.57□□□□□ -0.24
SMAD4-201ENST00000342988 C2orf70A6NJV1 201 aa13.56□□□□□ -0.24
SMAD4-201ENST00000342988 P0DMU3 169 aa13.56□□□□□ -0.24
SMAD4-201ENST00000342988 FAM231AP0DMU4 169 aa13.56□□□□□ -0.24
SMAD4-201ENST00000342988 FAM231CP0DMU5 169 aa13.56□□□□□ -0.24
SMAD4-201ENST00000342988 FOXL2NBQ6ZUU3 175 aa13.56□□□□□ -0.24
SMAD4-201ENST00000342988 C15orf65H3BRN8 121 aa13.56□□□□□ -0.24
SMAD4-201ENST00000342988 C10orf25Q5T742 122 aa13.56□□□□□ -0.24
SMAD4-201ENST00000342988 SPINK6Q6UWN8 80 aa13.56□□□□□ -0.24
SMAD4-201ENST00000342988 TMEM105Q8N8V8 129 aa13.56□□□□□ -0.24
SMAD4-201ENST00000342988 HILS1P60008 231 aa13.55□□□□□ -0.24
SMAD4-201ENST00000342988 LINC00269Q8N2A0 174 aa13.55□□□□□ -0.24
SMAD4-201ENST00000342988 SCXQ7RTU7 201 aa13.55□□□□□ -0.24
SMAD4-201ENST00000342988 NRACQ8N912 160 aa13.54□□□□□ -0.24
SMAD4-201ENST00000342988 RNASE8Q8TDE3 154 aaKnown RBP13.54□□□□□ -0.24
SMAD4-201ENST00000342988 A0A096LNI7 61 aa13.54□□□□□ -0.24
SMAD4-201ENST00000342988 AJUBAQ96IF1 538 aa13.54□□□□□ -0.24
SMAD4-201ENST00000342988 SMIM9A6NGZ8 99 aa13.54□□□□□ -0.24
SMAD4-201ENST00000342988 MT-ATP8P03928 68 aa13.54□□□□□ -0.24
SMAD4-201ENST00000342988 MIFP14174 115 aa13.54□□□□□ -0.24
SMAD4-201ENST00000342988 K7EMT4 169 aa13.53□□□□□ -0.24
SMAD4-201ENST00000342988 A0A1B0GXF2 115 aa13.53□□□□□ -0.24
SMAD4-201ENST00000342988 COX7CP15954 63 aa13.53□□□□□ -0.24
SMAD4-201ENST00000342988 FLVCR1-AS1Q8TAF5 88 aa13.53□□□□□ -0.24
SMAD4-201ENST00000342988 IGHV4-61A0A0C4DH41 118 aa13.53□□□□□ -0.24
SMAD4-201ENST00000342988 COX17Q14061 63 aa13.53□□□□□ -0.24
SMAD4-201ENST00000342988 B3GALT5-AS1P59052 145 aa13.52□□□□□ -0.24
SMAD4-201ENST00000342988 DIAPH2-AS1Q14236 149 aa13.52□□□□□ -0.24
SMAD4-201ENST00000342988 A0A0J9YXY3 114 aa13.51□□□□□ -0.25
SMAD4-201ENST00000342988 SIRPDQ9H106 197 aa13.51□□□□□ -0.25
SMAD4-201ENST00000342988 ESM1Q9NQ30 184 aa13.51□□□□□ -0.25
SMAD4-201ENST00000342988 LINC01548A6NM66 108 aa13.51□□□□□ -0.25
SMAD4-201ENST00000342988 TMEM89A2RUT3 159 aa13.51□□□□□ -0.25
SMAD4-201ENST00000342988 YPEL4Q96NS1 127 aa13.51□□□□□ -0.25
SMAD4-201ENST00000342988 SLX1AQ9BQ83 275 aa13.51□□□□□ -0.25
SMAD4-201ENST00000342988 DEFB113Q30KQ7 82 aa13.5□□□□□ -0.25
SMAD4-201ENST00000342988 X6R8D5 127 aa13.5□□□□□ -0.25
SMAD4-201ENST00000342988 IGFL3Q6UXB1 125 aa13.49□□□□□ -0.25
SMAD4-201ENST00000342988 LINC00322Q6ZN03 302 aaPredicted RBP13.49□□□□□ -0.25
SMAD4-201ENST00000342988 PLA2G2AP14555 144 aa13.49□□□□□ -0.25
SMAD4-201ENST00000342988 FAM30AQ9NZY2 134 aa13.49□□□□□ -0.25
SMAD4-201ENST00000342988 MYCNOSP40205 109 aa13.48□□□□□ -0.25
SMAD4-201ENST00000342988 PRSS33Q8NF86 280 aa13.48□□□□□ -0.25
SMAD4-201ENST00000342988 ZNF581Q9P0T4 197 aa13.48□□□□□ -0.25
SMAD4-201ENST00000342988 CCDC140Q96MF4 163 aa13.47□□□□□ -0.25
SMAD4-201ENST00000342988 TRBV30A0A0K0K1B3 111 aa13.47□□□□□ -0.25
SMAD4-201ENST00000342988 FAM19A5Q7Z5A7 132 aaPredicted RBP13.47□□□□□ -0.25
SMAD4-201ENST00000342988 CHCHD10Q8WYQ3 142 aaPredicted RBP13.47□□□□□ -0.25
SMAD4-201ENST00000342988 WFDC13Q8IUB5 93 aa13.47□□□□□ -0.25
SMAD4-201ENST00000342988 C5orf56Q8N8D9 126 aa13.47□□□□□ -0.25
SMAD4-201ENST00000342988 TRAV7A0A075B6U4 112 aa13.47□□□□□ -0.25
SMAD4-201ENST00000342988 IGLV11-55A0A075B6I3 123 aa13.47□□□□□ -0.25
SMAD4-201ENST00000342988 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP13.46□□□□□ -0.25
SMAD4-201ENST00000342988 CFAP126Q5VTH2 177 aa13.46□□□□□ -0.25
SMAD4-201ENST00000342988 NANOS2P60321 138 aaKnown RBP13.46□□□□□ -0.26
SMAD4-201ENST00000342988 HRCT1Q6UXD1 115 aa13.45□□□□□ -0.26
SMAD4-201ENST00000342988 ODF3Q96PU9 254 aa13.45□□□□□ -0.26
SMAD4-201ENST00000342988 C20orf203Q8NBC4 194 aa13.45□□□□□ -0.26
SMAD4-201ENST00000342988 IGLV1-44P01699 117 aa13.44□□□□□ -0.26
SMAD4-201ENST00000342988 CDPF1Q6NVV7 123 aa13.44□□□□□ -0.26
SMAD4-201ENST00000342988 MUC7Q8TAX7 377 aa13.44□□□□□ -0.26
SMAD4-201ENST00000342988 ESRGQ1W209 222 aa13.44□□□□□ -0.26
SMAD4-201ENST00000342988 Q8N976 141 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms