RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 GAGE2EQ4V326 116 aa16.47■□□□□ 0.23
TRIM28-202ENST00000341753 GAGE2DQ9UEU5 116 aa16.47■□□□□ 0.23
TRIM28-202ENST00000341753 TRAV16A0A0A6YYK6 109 aaPredicted RBP16.47■□□□□ 0.23
TRIM28-202ENST00000341753 CD28P10747 220 aa16.47■□□□□ 0.23
TRIM28-202ENST00000341753 TIMM21Q9BVV7 248 aa16.47■□□□□ 0.23
TRIM28-202ENST00000341753 USP24Q9UPU5 2620 aa16.47■□□□□ 0.23
TRIM28-202ENST00000341753 IGHV1OR15-1A0A075B7D0 117 aa16.46■□□□□ 0.23
TRIM28-202ENST00000341753 PRRC2AP48634 2157 aaKnown RBP16.46■□□□□ 0.23
TRIM28-202ENST00000341753 ABCA12Q86UK0 2595 aa16.46■□□□□ 0.22
TRIM28-202ENST00000341753 CREBBPQ92793 2442 aa16.45■□□□□ 0.22
TRIM28-202ENST00000341753 PRM2P04554 102 aa16.45■□□□□ 0.22
TRIM28-202ENST00000341753 SVIPQ8NHG7 77 aa16.45■□□□□ 0.22
TRIM28-202ENST00000341753 LITAFQ99732 161 aa16.45■□□□□ 0.22
TRIM28-202ENST00000341753 Q9UF83 564 aa16.45■□□□□ 0.22
TRIM28-202ENST00000341753 A0A0J9YX75 114 aa16.45■□□□□ 0.22
TRIM28-202ENST00000341753 A6NDX4 124 aa16.45■□□□□ 0.22
TRIM28-202ENST00000341753 PTPN13Q12923 2485 aa16.45■□□□□ 0.22
TRIM28-202ENST00000341753 TRAV8-4A0A0B4J246 113 aa16.44■□□□□ 0.22
TRIM28-202ENST00000341753 H3BUA1 57 aa16.44■□□□□ 0.22
TRIM28-202ENST00000341753 IGLV1-40P01703 118 aa16.44■□□□□ 0.22
TRIM28-202ENST00000341753 CLEC2BQ92478 149 aa16.44■□□□□ 0.22
TRIM28-202ENST00000341753 FAM104AQ969W3 186 aa16.44■□□□□ 0.22
TRIM28-202ENST00000341753 GAGE5Q13069 117 aa16.43■□□□□ 0.22
TRIM28-202ENST00000341753 GAGE6Q13070 117 aa16.43■□□□□ 0.22
TRIM28-202ENST00000341753 KNCNA6PVL3 124 aa16.43■□□□□ 0.22
TRIM28-202ENST00000341753 NDUFV3P56181 108 aaKnown RBP16.43■□□□□ 0.22
TRIM28-202ENST00000341753 DUX5Q96PT3 197 aa16.43■□□□□ 0.22
TRIM28-202ENST00000341753 ODF3Q96PU9 254 aa16.43■□□□□ 0.22
TRIM28-202ENST00000341753 TRBV10-2A0A0K0K1G8 114 aa16.42■□□□□ 0.22
TRIM28-202ENST00000341753 MXRA5Q9NR99 2828 aa16.42■□□□□ 0.22
TRIM28-202ENST00000341753 C2orf82Q6UX34 121 aa16.42■□□□□ 0.22
TRIM28-202ENST00000341753 H3BMM0 161 aa16.41■□□□□ 0.22
TRIM28-202ENST00000341753 M0QXV9 152 aa16.41■□□□□ 0.22
TRIM28-202ENST00000341753 UBE2WQ96B02 151 aa16.41■□□□□ 0.22
TRIM28-202ENST00000341753 ICOSQ9Y6W8 199 aa16.41■□□□□ 0.22
TRIM28-202ENST00000341753 DAND5Q8N907 189 aa16.41■□□□□ 0.22
TRIM28-202ENST00000341753 C15orf53Q8NAA6 179 aa16.41■□□□□ 0.22
TRIM28-202ENST00000341753 NDUFA12Q9UI09 145 aa16.41■□□□□ 0.22
TRIM28-202ENST00000341753 TRBV30A0A0K0K1B3 111 aa16.4■□□□□ 0.22
TRIM28-202ENST00000341753 CCDC179H3BU77 68 aa16.4■□□□□ 0.22
TRIM28-202ENST00000341753 IGHV4-59P01825 116 aa16.4■□□□□ 0.22
TRIM28-202ENST00000341753 H7C423 109 aa16.39■□□□□ 0.22
TRIM28-202ENST00000341753 BRI3O95415 125 aa16.39■□□□□ 0.22
TRIM28-202ENST00000341753 SNRPD3P62318 126 aaKnown RBP16.39■□□□□ 0.22
TRIM28-202ENST00000341753 TTC32Q5I0X7 151 aa16.39■□□□□ 0.22
TRIM28-202ENST00000341753 K7EMT4 169 aa16.39■□□□□ 0.21
TRIM28-202ENST00000341753 RBMY1A1P0DJD3 496 aaKnown RBP16.38■□□□□ 0.21
TRIM28-202ENST00000341753 RBMY1CP0DJD4 496 aa16.38■□□□□ 0.21
TRIM28-202ENST00000341753 RBMY1FQ15415 496 aaKnown RBP16.38■□□□□ 0.21
TRIM28-202ENST00000341753 DEFB112Q30KQ8 113 aa16.37■□□□□ 0.21
TRIM28-202ENST00000341753 IGKV2D-29A0A075B6S2 120 aaPredicted RBP16.36■□□□□ 0.21
TRIM28-202ENST00000341753 IGKV2-29A2NJV5 120 aaPredicted RBP16.36■□□□□ 0.21
TRIM28-202ENST00000341753 IFITM1P13164 125 aa16.36■□□□□ 0.21
TRIM28-202ENST00000341753 RPL13AP40429 203 aaKnown RBP16.36■□□□□ 0.21
TRIM28-202ENST00000341753 MRPS36P82909 103 aaKnown RBP16.36■□□□□ 0.21
TRIM28-202ENST00000341753 DUX3Q96PT4 197 aa16.36■□□□□ 0.21
TRIM28-202ENST00000341753 IGHV1-58A0A0C4DH39 117 aa16.36■□□□□ 0.21
TRIM28-202ENST00000341753 B4DSR2 109 aa16.36■□□□□ 0.21
TRIM28-202ENST00000341753 SYNJ2BPP57105 145 aa16.36■□□□□ 0.21
TRIM28-202ENST00000341753 CFHR3Q02985 330 aa16.36■□□□□ 0.21
TRIM28-202ENST00000341753 K7EQG2 157 aa16.35■□□□□ 0.21
TRIM28-202ENST00000341753 CUBNO60494 3623 aa16.34■□□□□ 0.21
TRIM28-202ENST00000341753 IGHV3-38A0A0C4DH36 116 aa16.34■□□□□ 0.21
TRIM28-202ENST00000341753 BBC3Q96PG8 261 aaPredicted RBP16.34■□□□□ 0.21
TRIM28-202ENST00000341753 TLN2Q9Y4G6 2542 aa16.34■□□□□ 0.21
TRIM28-202ENST00000341753 Q6ZSN1 163 aa16.34■□□□□ 0.21
TRIM28-202ENST00000341753 ZNF469Q96JG9 3925 aaPredicted RBP16.34■□□□□ 0.21
TRIM28-202ENST00000341753 MIAQ16674 131 aa16.33■□□□□ 0.21
TRIM28-202ENST00000341753 TNFRSF18Q9Y5U5 241 aa16.33■□□□□ 0.21
TRIM28-202ENST00000341753 TEX15Q9BXT5 2789 aa16.33■□□□□ 0.2
TRIM28-202ENST00000341753 VSIG2Q96IQ7 327 aa16.33■□□□□ 0.2
TRIM28-202ENST00000341753 NAV2Q8IVL1 2488 aa16.32■□□□□ 0.2
TRIM28-202ENST00000341753 EPG5Q9HCE0 2579 aa16.32■□□□□ 0.2
TRIM28-202ENST00000341753 PSMB8P28062 276 aa16.32■□□□□ 0.2
TRIM28-202ENST00000341753 A0A0U1RRA0 63 aa16.31■□□□□ 0.2
TRIM28-202ENST00000341753 GAGE12JA6NER3 117 aa16.31■□□□□ 0.2
TRIM28-202ENST00000341753 GAGE7O76087 117 aa16.31■□□□□ 0.2
TRIM28-202ENST00000341753 GAGE12FP0CL80 117 aa16.31■□□□□ 0.2
TRIM28-202ENST00000341753 GAGE12GP0CL81 117 aa16.31■□□□□ 0.2
TRIM28-202ENST00000341753 GAGE12IP0CL82 117 aa16.31■□□□□ 0.2
TRIM28-202ENST00000341753 GAGE4Q13068 117 aa16.31■□□□□ 0.2
TRIM28-202ENST00000341753 SPANXDQ9BXN6 97 aa16.31■□□□□ 0.2
TRIM28-202ENST00000341753 SPANXCQ9NY87 97 aa16.31■□□□□ 0.2
TRIM28-202ENST00000341753 PYGO1Q9Y3Y4 419 aa16.31■□□□□ 0.2
TRIM28-202ENST00000341753 COX6CP09669 75 aa16.31■□□□□ 0.2
TRIM28-202ENST00000341753 TRGV11A0A075B6L2 103 aa16.3■□□□□ 0.2
TRIM28-202ENST00000341753 KRTAP10-9P60411 292 aa16.29■□□□□ 0.2
TRIM28-202ENST00000341753 TMEM61Q8N0U2 210 aa16.29■□□□□ 0.2
TRIM28-202ENST00000341753 NBPF19A0A087WUL8 3843 aa16.29■□□□□ 0.2
TRIM28-202ENST00000341753 ZNF625Q96I27 306 aaPredicted RBP16.28■□□□□ 0.2
TRIM28-202ENST00000341753 LINC00467Q9BRT7 94 aa16.28■□□□□ 0.2
TRIM28-202ENST00000341753 CHCHD7Q9BUK0 85 aa16.28■□□□□ 0.2
TRIM28-202ENST00000341753 UBE2D4Q9Y2X8 147 aa16.28■□□□□ 0.2
TRIM28-202ENST00000341753 CDKN2A-AS1Q9UH64 79 aa16.27■□□□□ 0.19
TRIM28-202ENST00000341753 TINCRA0A1B0GVN0 87 aa16.26■□□□□ 0.19
TRIM28-202ENST00000341753 LST1O00453 97 aa16.26■□□□□ 0.19
TRIM28-202ENST00000341753 HIST2H2BDQ6DRA6 164 aa16.26■□□□□ 0.19
TRIM28-202ENST00000341753 LINC01600Q96MT4 127 aa16.26■□□□□ 0.19
TRIM28-202ENST00000341753 NACAE9PAV3 2078 aa16.26■□□□□ 0.19
TRIM28-202ENST00000341753 H3BT86 120 aa16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms