RNA–Protein interactions for RNA: ENST00000331433.4

CLCNKA-201, Transcript of chloride voltage-gated channel Ka, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CLCNKA, Length 2,475 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-201ENST00000331433 LINC00467Q9BRT7 94 aa10.77□□□□□ -0.69
CLCNKA-201ENST00000331433 FOSL1P15407 271 aa10.77□□□□□ -0.69
CLCNKA-201ENST00000331433 PIK3CD-AS1Q5SR53 167 aa10.77□□□□□ -0.69
CLCNKA-201ENST00000331433 C1orf158Q8N1D5 194 aa10.77□□□□□ -0.69
CLCNKA-201ENST00000331433 SPXQ9BT56 116 aa10.76□□□□□ -0.69
CLCNKA-201ENST00000331433 HIVEP2P31629 2446 aa10.76□□□□□ -0.69
CLCNKA-201ENST00000331433 FLNBO75369 2602 aaKnown RBP10.76□□□□□ -0.69
CLCNKA-201ENST00000331433 SAP30O75446 220 aa10.76□□□□□ -0.69
CLCNKA-201ENST00000331433 NFE4Q86UQ8 179 aa10.76□□□□□ -0.69
CLCNKA-201ENST00000331433 PTH2Q96A98 100 aa10.76□□□□□ -0.69
CLCNKA-201ENST00000331433 VCX2Q9H322 139 aa10.76□□□□□ -0.69
CLCNKA-201ENST00000331433 A0A0J9YXV3 536 aa10.75□□□□□ -0.69
CLCNKA-201ENST00000331433 BEAN1Q3B7T3 259 aa10.75□□□□□ -0.69
CLCNKA-201ENST00000331433 FAM104AQ969W3 186 aa10.75□□□□□ -0.69
CLCNKA-201ENST00000331433 CLUHP3Q96NS8 147 aa10.75□□□□□ -0.69
CLCNKA-201ENST00000331433 C16orf95Q9H693 158 aa10.75□□□□□ -0.69
CLCNKA-201ENST00000331433 IGHV3-38A0A0C4DH36 116 aa10.75□□□□□ -0.69
CLCNKA-201ENST00000331433 IGLL5B9A064 214 aa10.75□□□□□ -0.69
CLCNKA-201ENST00000331433 RNASE13Q5GAN3 156 aaKnown RBP10.75□□□□□ -0.69
CLCNKA-201ENST00000331433 SMR3AQ99954 134 aa10.75□□□□□ -0.69
CLCNKA-201ENST00000331433 IGHV3-64A0A075B6Q5 118 aa10.74□□□□□ -0.69
CLCNKA-201ENST00000331433 RHODO00212 210 aa10.74□□□□□ -0.69
CLCNKA-201ENST00000331433 RBX1P62877 108 aa10.74□□□□□ -0.69
CLCNKA-201ENST00000331433 SRSF9Q13242 221 aaKnown RBP eCLIP10.74□□□□□ -0.69
CLCNKA-201ENST00000331433 WFDC10AQ9H1F0 79 aa10.74□□□□□ -0.69
CLCNKA-201ENST00000331433 IGHV3-53P01767 116 aa10.74□□□□□ -0.69
CLCNKA-201ENST00000331433 ZNF22P17026 224 aaPredicted RBP10.74□□□□□ -0.69
CLCNKA-201ENST00000331433 A0A0J9YY99 117 aa10.73□□□□□ -0.69
CLCNKA-201ENST00000331433 J3QQQ9 107 aa10.73□□□□□ -0.69
CLCNKA-201ENST00000331433 RS1O15537 224 aa10.73□□□□□ -0.69
CLCNKA-201ENST00000331433 OCIAD2Q56VL3 154 aa10.73□□□□□ -0.69
CLCNKA-201ENST00000331433 CHCHD7Q9BUK0 85 aa10.73□□□□□ -0.69
CLCNKA-201ENST00000331433 C2CD3Q4AC94 2353 aa10.73□□□□□ -0.69
CLCNKA-201ENST00000331433 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.73□□□□□ -0.69
CLCNKA-201ENST00000331433 TRGV1A0A0A0MS02 117 aa10.73□□□□□ -0.69
CLCNKA-201ENST00000331433 TMEM223A0PJW6 202 aa10.73□□□□□ -0.69
CLCNKA-201ENST00000331433 IGKV2-29A2NJV5 120 aaPredicted RBP10.73□□□□□ -0.69
CLCNKA-201ENST00000331433 ZNF479Q96JC4 524 aa10.73□□□□□ -0.69
CLCNKA-201ENST00000331433 AMELXQ99217 191 aa10.73□□□□□ -0.69
CLCNKA-201ENST00000331433 OR5A1Q8NGJ0 315 aa10.72□□□□□ -0.69
CLCNKA-201ENST00000331433 PYGO1Q9Y3Y4 419 aa10.72□□□□□ -0.69
CLCNKA-201ENST00000331433 A0A1B0GWB2 263 aa10.72□□□□□ -0.69
CLCNKA-201ENST00000331433 LGALS3P17931 250 aaKnown RBP10.72□□□□□ -0.69
CLCNKA-201ENST00000331433 ZNF418Q8TF45 676 aaPredicted RBP10.72□□□□□ -0.69
CLCNKA-201ENST00000331433 HILS1P60008 231 aa10.71□□□□□ -0.69
CLCNKA-201ENST00000331433 RNF151Q2KHN1 245 aa10.71□□□□□ -0.69
CLCNKA-201ENST00000331433 ADARB2-AS1A8MUL3 147 aa10.7□□□□□ -0.7
CLCNKA-201ENST00000331433 IL17DQ8TAD2 202 aa10.7□□□□□ -0.7
CLCNKA-201ENST00000331433 Q6ZTI0 123 aa10.7□□□□□ -0.7
CLCNKA-201ENST00000331433 GIG44P09565 113 aaPredicted RBP10.69□□□□□ -0.7
CLCNKA-201ENST00000331433 RRN3P1Q2M238 152 aa10.69□□□□□ -0.7
CLCNKA-201ENST00000331433 UBE2D4Q9Y2X8 147 aa10.69□□□□□ -0.7
CLCNKA-201ENST00000331433 LEPROTO15243 131 aa10.69□□□□□ -0.7
CLCNKA-201ENST00000331433 IGLV1-51P01701 117 aa10.68□□□□□ -0.7
CLCNKA-201ENST00000331433 RPL35AP18077 110 aaKnown RBP10.68□□□□□ -0.7
CLCNKA-201ENST00000331433 COTL1Q14019 142 aa10.68□□□□□ -0.7
CLCNKA-201ENST00000331433 DNAJC30Q96LL9 226 aa10.68□□□□□ -0.7
CLCNKA-201ENST00000331433 OTOGQ6ZRI0 2925 aa10.68□□□□□ -0.7
CLCNKA-201ENST00000331433 SLC25A29Q8N8R3 303 aa10.68□□□□□ -0.7
CLCNKA-201ENST00000331433 FN1P02751 2386 aaKnown RBP10.68□□□□□ -0.7
CLCNKA-201ENST00000331433 TMEM238LA0A1B0GVL6 79 aa10.67□□□□□ -0.7
CLCNKA-201ENST00000331433 A6NJY4 79 aa10.67□□□□□ -0.7
CLCNKA-201ENST00000331433 MRPS36P82909 103 aaKnown RBP10.67□□□□□ -0.7
CLCNKA-201ENST00000331433 Q6ZUT4 128 aa10.67□□□□□ -0.7
CLCNKA-201ENST00000331433 TMEM263Q8WUH6 116 aaKnown RBP10.67□□□□□ -0.7
CLCNKA-201ENST00000331433 PGPEP1Q9NXJ5 209 aa10.67□□□□□ -0.7
CLCNKA-201ENST00000331433 UBE2D1P51668 147 aa10.67□□□□□ -0.7
CLCNKA-201ENST00000331433 NOP10Q9NPE3 64 aaKnown RBP10.67□□□□□ -0.7
CLCNKA-201ENST00000331433 SPANXA1Q9NS26 97 aa10.67□□□□□ -0.7
CLCNKA-201ENST00000331433 C19orf73Q9NVV2 129 aa10.67□□□□□ -0.7
CLCNKA-201ENST00000331433 CBY1Q9Y3M2 126 aa10.67□□□□□ -0.7
CLCNKA-201ENST00000331433 APOMO95445 188 aa10.66□□□□□ -0.7
CLCNKA-201ENST00000331433 IGHV3-30P01768 117 aa10.66□□□□□ -0.7
CLCNKA-201ENST00000331433 IGHV3-30-5P0DP03 117 aa10.66□□□□□ -0.7
CLCNKA-201ENST00000331433 TRAV8-3A0A0A6YYJ7 113 aa10.66□□□□□ -0.7
CLCNKA-201ENST00000331433 SPANXB1Q9NS25 103 aaPredicted RBP10.66□□□□□ -0.7
CLCNKA-201ENST00000331433 CRYBA4P53673 196 aa10.65□□□□□ -0.7
CLCNKA-201ENST00000331433 H3BMG7 143 aa10.65□□□□□ -0.7
CLCNKA-201ENST00000331433 IGHV3-30-3P0DP02 117 aa10.65□□□□□ -0.7
CLCNKA-201ENST00000331433 SFTA2Q6UW10 78 aa10.65□□□□□ -0.7
CLCNKA-201ENST00000331433 KRTAP10-3P60369 221 aa10.64□□□□□ -0.71
CLCNKA-201ENST00000331433 C10orf126Q8N4M7 172 aa10.64□□□□□ -0.71
CLCNKA-201ENST00000331433 TIMM21Q9BVV7 248 aa10.64□□□□□ -0.71
CLCNKA-201ENST00000331433 K7ERU9 68 aa10.64□□□□□ -0.71
CLCNKA-201ENST00000331433 NDUFA7O95182 113 aa10.64□□□□□ -0.71
CLCNKA-201ENST00000331433 K7EQD1 137 aa10.63□□□□□ -0.71
CLCNKA-201ENST00000331433 CMC4P56277 68 aaPredicted RBP10.63□□□□□ -0.71
CLCNKA-201ENST00000331433 TRAV4A0A0B4J268 109 aa10.63□□□□□ -0.71
CLCNKA-201ENST00000331433 PLAC8L1A1L4L8 177 aa10.63□□□□□ -0.71
CLCNKA-201ENST00000331433 NDUFA11Q86Y39 141 aa10.63□□□□□ -0.71
CLCNKA-201ENST00000331433 VWFP04275 2813 aa10.63□□□□□ -0.71
CLCNKA-201ENST00000331433 TINCRA0A1B0GVN0 87 aa10.62□□□□□ -0.71
CLCNKA-201ENST00000331433 A8MZ25 164 aa10.62□□□□□ -0.71
CLCNKA-201ENST00000331433 TSPAN13O95857 204 aa10.62□□□□□ -0.71
CLCNKA-201ENST00000331433 MTURNQ8N3F0 131 aa10.62□□□□□ -0.71
CLCNKA-201ENST00000331433 SPINK8P0C7L1 97 aa10.62□□□□□ -0.71
CLCNKA-201ENST00000331433 CFC1BP0CG36 223 aa10.62□□□□□ -0.71
CLCNKA-201ENST00000331433 CFC1P0CG37 223 aa10.62□□□□□ -0.71
CLCNKA-201ENST00000331433 LINC00694P0DN24 101 aa10.62□□□□□ -0.71
CLCNKA-201ENST00000331433 FAM110AQ9BQ89 295 aa10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms