RNA–Protein interactions for RNA: ENST00000303354.10

SCN9A-201, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 9,786 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-201ENST00000303354 PTH2Q96A98 100 aa5.79□□□□□ -1.48
SCN9A-201ENST00000303354 LYRM9A8MSI8 78 aa5.79□□□□□ -1.48
SCN9A-201ENST00000303354 K7EP13 123 aa5.79□□□□□ -1.48
SCN9A-201ENST00000303354 K7EP34 96 aa5.79□□□□□ -1.48
SCN9A-201ENST00000303354 FXYD2P54710 66 aa5.78□□□□□ -1.48
SCN9A-201ENST00000303354 PLAC8L1A1L4L8 177 aa5.78□□□□□ -1.48
SCN9A-201ENST00000303354 TP73-AS1Q9UF72 201 aa5.78□□□□□ -1.48
SCN9A-201ENST00000303354 UBE2D2P62837 147 aa5.78□□□□□ -1.48
SCN9A-201ENST00000303354 IGLV5-52A0A0A0MRZ9 124 aa5.78□□□□□ -1.48
SCN9A-201ENST00000303354 NDUFA7O95182 113 aa5.78□□□□□ -1.48
SCN9A-201ENST00000303354 MIFP14174 115 aa5.78□□□□□ -1.48
SCN9A-201ENST00000303354 LYPD6Q86Y78 171 aa5.78□□□□□ -1.48
SCN9A-201ENST00000303354 X6R8D5 127 aa5.78□□□□□ -1.48
SCN9A-201ENST00000303354 PSMB8P28062 276 aa5.78□□□□□ -1.48
SCN9A-201ENST00000303354 IGHV1-58A0A0C4DH39 117 aa5.77□□□□□ -1.49
SCN9A-201ENST00000303354 SEC61GP60059 68 aa5.77□□□□□ -1.49
SCN9A-201ENST00000303354 HEATR5AQ86XA9 2040 aa5.77□□□□□ -1.49
SCN9A-201ENST00000303354 TMEM131Q92545 1883 aa5.77□□□□□ -1.49
SCN9A-201ENST00000303354 TRBV6-8A0A0A6YYG3 113 aa5.77□□□□□ -1.49
SCN9A-201ENST00000303354 MRPL52Q86TS9 123 aaKnown RBP5.77□□□□□ -1.49
SCN9A-201ENST00000303354 TEX49A0A1B0GTD5 131 aa5.77□□□□□ -1.49
SCN9A-201ENST00000303354 TRAV23DV6A0A075B6W5 121 aa5.77□□□□□ -1.49
SCN9A-201ENST00000303354 TMEM89A2RUT3 159 aa5.77□□□□□ -1.49
SCN9A-201ENST00000303354 Q6ZPA2 131 aa5.77□□□□□ -1.49
SCN9A-201ENST00000303354 CDKN2A-AS1Q9UH64 79 aa5.77□□□□□ -1.49
SCN9A-201ENST00000303354 TRBV10-2A0A0K0K1G8 114 aa5.77□□□□□ -1.49
SCN9A-201ENST00000303354 SYCNQ0VAF6 134 aa5.76□□□□□ -1.49
SCN9A-201ENST00000303354 Q6ZTC4 211 aa5.76□□□□□ -1.49
SCN9A-201ENST00000303354 SPTA1P02549 2419 aa5.76□□□□□ -1.49
SCN9A-201ENST00000303354 F8W1H4 67 aa5.76□□□□□ -1.49
SCN9A-201ENST00000303354 BRWD1-AS2P59051 145 aa5.76□□□□□ -1.49
SCN9A-201ENST00000303354 C20orf203Q8NBC4 194 aa5.76□□□□□ -1.49
SCN9A-201ENST00000303354 PSMG3-AS1Q96PY0 264 aa5.76□□□□□ -1.49
SCN9A-201ENST00000303354 POM121L12Q8N7R1 296 aa5.76□□□□□ -1.49
SCN9A-201ENST00000303354 SS18L2Q9UHA2 77 aa5.76□□□□□ -1.49
SCN9A-201ENST00000303354 NCOR1O75376 2440 aa5.76□□□□□ -1.49
SCN9A-201ENST00000303354 MP68P56378 58 aa5.75□□□□□ -1.49
SCN9A-201ENST00000303354 WFDC2Q14508 124 aa5.75□□□□□ -1.49
SCN9A-201ENST00000303354 MPLKIPQ8TAP9 179 aa5.75□□□□□ -1.49
SCN9A-201ENST00000303354 GPR179Q6PRD1 2367 aa5.75□□□□□ -1.49
SCN9A-201ENST00000303354 CRIP2P52943 208 aaPredicted RBP5.75□□□□□ -1.49
SCN9A-201ENST00000303354 U3KQK5 164 aa5.75□□□□□ -1.49
SCN9A-201ENST00000303354 C9orf116Q5BN46 136 aaPredicted RBP5.75□□□□□ -1.49
SCN9A-201ENST00000303354 PRR9Q5T870 116 aa5.75□□□□□ -1.49
SCN9A-201ENST00000303354 CRIP1P50238 77 aa5.74□□□□□ -1.49
SCN9A-201ENST00000303354 PKDREJQ9NTG1 2253 aa5.74□□□□□ -1.49
SCN9A-201ENST00000303354 IGLV4-69A0A075B6H9 119 aa5.74□□□□□ -1.49
SCN9A-201ENST00000303354 WFDC13Q8IUB5 93 aa5.74□□□□□ -1.49
SCN9A-201ENST00000303354 PRR4Q16378 134 aa5.74□□□□□ -1.49
SCN9A-201ENST00000303354 IL15RAQ13261 267 aa5.74□□□□□ -1.49
SCN9A-201ENST00000303354 A0A0B4J2C4 111 aa5.74□□□□□ -1.49
SCN9A-201ENST00000303354 UFSP1Q6NVU6 142 aa5.74□□□□□ -1.49
SCN9A-201ENST00000303354 CENPFP49454 3210 aa5.73□□□□□ -1.49
SCN9A-201ENST00000303354 MED14OSP0DP75 135 aa5.73□□□□□ -1.49
SCN9A-201ENST00000303354 A0A1W2PPR1 153 aa5.73□□□□□ -1.49
SCN9A-201ENST00000303354 RBX1P62877 108 aa5.73□□□□□ -1.49
SCN9A-201ENST00000303354 C6orf223Q8N319 242 aa5.73□□□□□ -1.49
SCN9A-201ENST00000303354 SMIM9A6NGZ8 99 aa5.73□□□□□ -1.49
SCN9A-201ENST00000303354 LINC01556Q5JQF7 62 aa5.73□□□□□ -1.49
SCN9A-201ENST00000303354 A0A0J9YXY3 114 aa5.73□□□□□ -1.49
SCN9A-201ENST00000303354 CXCL5P42830 114 aa5.73□□□□□ -1.49
SCN9A-201ENST00000303354 C20orf144Q9BQM9 153 aa5.73□□□□□ -1.49
SCN9A-201ENST00000303354 H0YGX0 51 aa5.72□□□□□ -1.49
SCN9A-201ENST00000303354 ZFAND3Q9H8U3 227 aa5.72□□□□□ -1.49
SCN9A-201ENST00000303354 DEFB116Q30KQ4 102 aa5.72□□□□□ -1.49
SCN9A-201ENST00000303354 LINC01620Q4KN68 170 aa5.72□□□□□ -1.49
SCN9A-201ENST00000303354 PCNTO95613 3336 aa5.72□□□□□ -1.49
SCN9A-201ENST00000303354 TECTAO75443 2155 aa5.72□□□□□ -1.49
SCN9A-201ENST00000303354 XGP55808 180 aa5.72□□□□□ -1.49
SCN9A-201ENST00000303354 FAM30AQ9NZY2 134 aa5.72□□□□□ -1.49
SCN9A-201ENST00000303354 BPY2O14599 106 aa5.72□□□□□ -1.49
SCN9A-201ENST00000303354 C6orf99Q4VX62 202 aa5.72□□□□□ -1.49
SCN9A-201ENST00000303354 B5MCH6 92 aa5.72□□□□□ -1.49
SCN9A-201ENST00000303354 E9PLD3 99 aa5.72□□□□□ -1.49
SCN9A-201ENST00000303354 SDIM1Q6ZPB5 146 aa5.72□□□□□ -1.49
SCN9A-201ENST00000303354 DOCK11Q5JSL3 2073 aa5.72□□□□□ -1.49
SCN9A-201ENST00000303354 FAM236AA0A1B0GUQ0 79 aa5.72□□□□□ -1.49
SCN9A-201ENST00000303354 FAM236BA0A1B0GV22 79 aa5.72□□□□□ -1.49
SCN9A-201ENST00000303354 GAS8-AS1O95177 125 aa5.72□□□□□ -1.49
SCN9A-201ENST00000303354 Q6Q795 121 aa5.72□□□□□ -1.49
SCN9A-201ENST00000303354 CNOT1A5YKK6 2376 aaKnown RBP5.71□□□□□ -1.49
SCN9A-201ENST00000303354 FAM236DA0A1B0GTK5 79 aa5.71□□□□□ -1.49
SCN9A-201ENST00000303354 FAM236CP0DP71 79 aa5.71□□□□□ -1.49
SCN9A-201ENST00000303354 PLXNB3Q9ULL4 1909 aa5.71□□□□□ -1.49
SCN9A-201ENST00000303354 IGLV4-3A0A075B6K6 122 aa5.71□□□□□ -1.49
SCN9A-201ENST00000303354 PRR3P79522 188 aaKnown RBP5.71□□□□□ -1.49
SCN9A-201ENST00000303354 FAM186AA6NE01 2351 aa5.71□□□□□ -1.49
SCN9A-201ENST00000303354 TMEM256-PLSCR3K7ERE1 68 aa5.71□□□□□ -1.5
SCN9A-201ENST00000303354 SVIPQ8NHG7 77 aa5.71□□□□□ -1.5
SCN9A-201ENST00000303354 C1orf137Q5JT78 98 aa5.71□□□□□ -1.5
SCN9A-201ENST00000303354 ZFHX2Q9C0A1 2572 aaPredicted RBP5.71□□□□□ -1.5
SCN9A-201ENST00000303354 CRYGBP07316 175 aa5.71□□□□□ -1.5
SCN9A-201ENST00000303354 ACACAQ13085 2346 aa5.71□□□□□ -1.5
SCN9A-201ENST00000303354 ODF1Q14990 250 aa5.71□□□□□ -1.5
SCN9A-201ENST00000303354 LINC00959A0A1B0GUT2 108 aa5.7□□□□□ -1.5
SCN9A-201ENST00000303354 CTRLP40313 264 aa5.7□□□□□ -1.5
SCN9A-201ENST00000303354 ZNF295-AS1Q8N0V1 137 aa5.7□□□□□ -1.5
SCN9A-201ENST00000303354 M0QXV9 152 aa5.7□□□□□ -1.5
SCN9A-201ENST00000303354 C1orf134Q5TEV5 83 aa5.7□□□□□ -1.5
SCN9A-201ENST00000303354 SPTSSBQ8NFR3 76 aa5.7□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 73.9 ms