RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 TMEM101Q96IK0 257 aa9.97□□□□□ -0.81
SKA3-201ENST00000298260 CYSTM1Q9H1C7 97 aa9.97□□□□□ -0.81
SKA3-201ENST00000298260 COX6CP09669 75 aa9.96□□□□□ -0.81
SKA3-201ENST00000298260 TRBV7-7A0A0K0K1E9 115 aa9.96□□□□□ -0.82
SKA3-201ENST00000298260 PROK1P58294 105 aa9.96□□□□□ -0.82
SKA3-201ENST00000298260 ABCA12Q86UK0 2595 aa9.95□□□□□ -0.82
SKA3-201ENST00000298260 H3BT86 120 aa9.95□□□□□ -0.82
SKA3-201ENST00000298260 M0QY20 66 aa9.95□□□□□ -0.82
SKA3-201ENST00000298260 SOCS3O14543 225 aa9.95□□□□□ -0.82
SKA3-201ENST00000298260 HTN1P15515 57 aa9.95□□□□□ -0.82
SKA3-201ENST00000298260 NOTCH3Q9UM47 2321 aa9.95□□□□□ -0.82
SKA3-201ENST00000298260 C20orf203Q8NBC4 194 aa9.95□□□□□ -0.82
SKA3-201ENST00000298260 FAM104AQ969W3 186 aa9.95□□□□□ -0.82
SKA3-201ENST00000298260 TMEM126AQ9H061 195 aa9.95□□□□□ -0.82
SKA3-201ENST00000298260 LENEPQ9Y5L5 61 aa9.95□□□□□ -0.82
SKA3-201ENST00000298260 NPFFO15130 113 aa9.94□□□□□ -0.82
SKA3-201ENST00000298260 NDUFA7O95182 113 aa9.94□□□□□ -0.82
SKA3-201ENST00000298260 PRM2P04554 102 aa9.94□□□□□ -0.82
SKA3-201ENST00000298260 EDA2RQ9HAV5 297 aa9.94□□□□□ -0.82
SKA3-201ENST00000298260 CD28P10747 220 aa9.94□□□□□ -0.82
SKA3-201ENST00000298260 OVOL1O14753 267 aa9.93□□□□□ -0.82
SKA3-201ENST00000298260 NXPH4O95158 308 aa9.93□□□□□ -0.82
SKA3-201ENST00000298260 RHOHQ15669 191 aa9.93□□□□□ -0.82
SKA3-201ENST00000298260 TMEM61Q8N0U2 210 aa9.93□□□□□ -0.82
SKA3-201ENST00000298260 NRGNQ92686 78 aa9.93□□□□□ -0.82
SKA3-201ENST00000298260 SAA4P35542 130 aa9.93□□□□□ -0.82
SKA3-201ENST00000298260 Q8N2B8 174 aa9.93□□□□□ -0.82
SKA3-201ENST00000298260 FAM19A4Q96LR4 140 aa9.93□□□□□ -0.82
SKA3-201ENST00000298260 FAM19A5Q7Z5A7 132 aaPredicted RBP9.92□□□□□ -0.82
SKA3-201ENST00000298260 C3orf22Q8N5N4 141 aa9.92□□□□□ -0.82
SKA3-201ENST00000298260 TRBV7-1A0A0A6YYK4 115 aa9.92□□□□□ -0.82
SKA3-201ENST00000298260 NSUN5P1Q3KNT7 163 aa9.92□□□□□ -0.82
SKA3-201ENST00000298260 MINOS1Q5TGZ0 78 aa9.92□□□□□ -0.82
SKA3-201ENST00000298260 CITED2Q99967 270 aaPredicted RBP9.92□□□□□ -0.82
SKA3-201ENST00000298260 M0R1W7 72 aa9.92□□□□□ -0.82
SKA3-201ENST00000298260 CCL21O00585 134 aa9.92□□□□□ -0.82
SKA3-201ENST00000298260 IGHV1-69P01742 117 aa9.92□□□□□ -0.82
SKA3-201ENST00000298260 MIAQ16674 131 aa9.92□□□□□ -0.82
SKA3-201ENST00000298260 LINC01600Q96MT4 127 aa9.91□□□□□ -0.82
SKA3-201ENST00000298260 FAM240AA0A1B0GVK7 77 aa9.91□□□□□ -0.82
SKA3-201ENST00000298260 KNCNA6PVL3 124 aa9.91□□□□□ -0.82
SKA3-201ENST00000298260 PRB1P04280 392 aa9.91□□□□□ -0.82
SKA3-201ENST00000298260 DNAJC30Q96LL9 226 aa9.91□□□□□ -0.82
SKA3-201ENST00000298260 MED14OSP0DP75 135 aa9.9□□□□□ -0.82
SKA3-201ENST00000298260 RHPN1-AS1Q9BWJ2 59 aa9.9□□□□□ -0.82
SKA3-201ENST00000298260 hADV29S1A0JD25 119 aa9.9□□□□□ -0.82
SKA3-201ENST00000298260 DAZ2Q13117 558 aaKnown RBP9.9□□□□□ -0.82
SKA3-201ENST00000298260 DAZ4Q86SG3 579 aaKnown RBP9.9□□□□□ -0.82
SKA3-201ENST00000298260 UBTD1Q9HAC8 227 aa9.9□□□□□ -0.82
SKA3-201ENST00000298260 DAZ1Q9NQZ3 744 aaKnown RBP9.9□□□□□ -0.82
SKA3-201ENST00000298260 DAZ3Q9NR90 486 aaKnown RBP9.9□□□□□ -0.82
SKA3-201ENST00000298260 UCNP55089 124 aa9.89□□□□□ -0.83
SKA3-201ENST00000298260 DEFB121Q5J5C9 76 aa9.89□□□□□ -0.83
SKA3-201ENST00000298260 USP9YO00507 2555 aaPredicted RBP9.89□□□□□ -0.83
SKA3-201ENST00000298260 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.89□□□□□ -0.83
SKA3-201ENST00000298260 IGHV1-58A0A0C4DH39 117 aa9.89□□□□□ -0.83
SKA3-201ENST00000298260 A0A0J9YX75 114 aa9.89□□□□□ -0.83
SKA3-201ENST00000298260 IGKV2-29A2NJV5 120 aaPredicted RBP9.89□□□□□ -0.83
SKA3-201ENST00000298260 KLRB1Q12918 225 aa9.89□□□□□ -0.83
SKA3-201ENST00000298260 KIR2DL5BQ8NHK3 375 aa9.89□□□□□ -0.83
SKA3-201ENST00000298260 PTPN13Q12923 2485 aa9.89□□□□□ -0.83
SKA3-201ENST00000298260 IGHV3-38A0A0C4DH36 116 aa9.88□□□□□ -0.83
SKA3-201ENST00000298260 IGHG2P01859 326 aa9.88□□□□□ -0.83
SKA3-201ENST00000298260 HOXD3P31249 432 aaPredicted RBP9.88□□□□□ -0.83
SKA3-201ENST00000298260 DCANP1Q8TF63 244 aa9.88□□□□□ -0.83
SKA3-201ENST00000298260 CSPG4Q6UVK1 2322 aa9.88□□□□□ -0.83
SKA3-201ENST00000298260 IGHV3-16A0A0C4DH30 117 aa9.88□□□□□ -0.83
SKA3-201ENST00000298260 TRBV6-5A0A0K0K1A5 114 aa9.88□□□□□ -0.83
SKA3-201ENST00000298260 KLLNB2CW77 178 aa9.88□□□□□ -0.83
SKA3-201ENST00000298260 SPINK13Q1W4C9 94 aa9.88□□□□□ -0.83
SKA3-201ENST00000298260 VSIG2Q96IQ7 327 aa9.88□□□□□ -0.83
SKA3-201ENST00000298260 Q9HAA7 133 aa9.88□□□□□ -0.83
SKA3-201ENST00000298260 TRAV13-1A0A0B4J241 112 aa9.88□□□□□ -0.83
SKA3-201ENST00000298260 GAGE2AQ6NT46 116 aa9.88□□□□□ -0.83
SKA3-201ENST00000298260 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP9.88□□□□□ -0.83
SKA3-201ENST00000298260 SMIM9A6NGZ8 99 aa9.87□□□□□ -0.83
SKA3-201ENST00000298260 UQCRQO14949 82 aa9.87□□□□□ -0.83
SKA3-201ENST00000298260 SDIM1Q6ZPB5 146 aa9.87□□□□□ -0.83
SKA3-201ENST00000298260 FAM218AQ96MZ4 157 aa9.87□□□□□ -0.83
SKA3-201ENST00000298260 SPANXDQ9BXN6 97 aa9.87□□□□□ -0.83
SKA3-201ENST00000298260 SPANXCQ9NY87 97 aa9.87□□□□□ -0.83
SKA3-201ENST00000298260 CDKN2A-AS1Q9UH64 79 aa9.87□□□□□ -0.83
SKA3-201ENST00000298260 DOPEY1Q5JWR5 2465 aa9.86□□□□□ -0.83
SKA3-201ENST00000298260 MRPS36P82909 103 aaKnown RBP9.86□□□□□ -0.83
SKA3-201ENST00000298260 APRG1Q8IVJ8 170 aa9.86□□□□□ -0.83
SKA3-201ENST00000298260 C5orf56Q8N8D9 126 aa9.86□□□□□ -0.83
SKA3-201ENST00000298260 LY6EQ16553 131 aa9.86□□□□□ -0.83
SKA3-201ENST00000298260 BRD3OSQ6XYD6 125 aa9.86□□□□□ -0.83
SKA3-201ENST00000298260 LINC00526Q96FQ7 95 aa9.86□□□□□ -0.83
SKA3-201ENST00000298260 C22orf24Q9Y442 160 aa9.86□□□□□ -0.83
SKA3-201ENST00000298260 MINOS1-NBL1R4GNA1 71 aa9.86□□□□□ -0.83
SKA3-201ENST00000298260 TIRAPP58753 221 aa9.85□□□□□ -0.83
SKA3-201ENST00000298260 SIRPDQ9H106 197 aa9.85□□□□□ -0.83
SKA3-201ENST00000298260 HELZ2Q9BYK8 2649 aaKnown RBP9.85□□□□□ -0.83
SKA3-201ENST00000298260 C9orf129Q5T035 196 aaKnown RBP9.85□□□□□ -0.83
SKA3-201ENST00000298260 A0A087WVE0 104 aa9.84□□□□□ -0.83
SKA3-201ENST00000298260 BAALC-AS2P0C853 105 aa9.84□□□□□ -0.83
SKA3-201ENST00000298260 PRORYQ9H606 182 aa9.84□□□□□ -0.83
SKA3-201ENST00000298260 ZANQ9Y493 2812 aa9.84□□□□□ -0.83
SKA3-201ENST00000298260 IGKV3D-7A0A0C4DH55 119 aa9.84□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 134.9 ms