RNA–Protein interactions for RNA: ENST00000296043.6

SHROOM3-201, Transcript of shroom family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHROOM3, Length 11,020 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-201ENST00000296043 IGLV2-23P01705 113 aa9.04□□□□□ -0.96
SHROOM3-201ENST00000296043 RNF114Q9Y508 228 aa9.04□□□□□ -0.96
SHROOM3-201ENST00000296043 C3orf84H3BNL1 204 aa9.04□□□□□ -0.96
SHROOM3-201ENST00000296043 MRPS36P82909 103 aaKnown RBP9.04□□□□□ -0.96
SHROOM3-201ENST00000296043 Q8N976 141 aa9.04□□□□□ -0.96
SHROOM3-201ENST00000296043 RAI1Q7Z5J4 1906 aaPredicted RBP9.04□□□□□ -0.96
SHROOM3-201ENST00000296043 C22orf34Q6ZV56 151 aa9.04□□□□□ -0.96
SHROOM3-201ENST00000296043 CPAMD8Q8IZJ3 1885 aa9.04□□□□□ -0.96
SHROOM3-201ENST00000296043 DEFB1P60022 68 aa9.03□□□□□ -0.96
SHROOM3-201ENST00000296043 RITA1Q96K30 269 aa9.03□□□□□ -0.96
SHROOM3-201ENST00000296043 DEFB121Q5J5C9 76 aa9.03□□□□□ -0.96
SHROOM3-201ENST00000296043 H7C423 109 aa9.03□□□□□ -0.96
SHROOM3-201ENST00000296043 POLQO75417 2590 aa9.03□□□□□ -0.96
SHROOM3-201ENST00000296043 SIRPDQ9H106 197 aa9.03□□□□□ -0.96
SHROOM3-201ENST00000296043 VPREB1P12018 145 aa9.02□□□□□ -0.96
SHROOM3-201ENST00000296043 ZFAND3Q9H8U3 227 aa9.02□□□□□ -0.96
SHROOM3-201ENST00000296043 IGHV4-30-4P0DP06 118 aa9.02□□□□□ -0.97
SHROOM3-201ENST00000296043 IGHV4-31P0DP07 118 aa9.02□□□□□ -0.97
SHROOM3-201ENST00000296043 LINC00526Q96FQ7 95 aa9.02□□□□□ -0.97
SHROOM3-201ENST00000296043 C19orf71A6NCJ1 209 aa9.02□□□□□ -0.97
SHROOM3-201ENST00000296043 Q8TCH9 128 aa9.02□□□□□ -0.97
SHROOM3-201ENST00000296043 NDUFA1O15239 70 aa9.02□□□□□ -0.97
SHROOM3-201ENST00000296043 NCOR2Q9Y618 2525 aa9.02□□□□□ -0.97
SHROOM3-201ENST00000296043 A0A0G2JNJ9 132 aa9.02□□□□□ -0.97
SHROOM3-201ENST00000296043 Q9UFV3 132 aa9.02□□□□□ -0.97
SHROOM3-201ENST00000296043 TRBV30A0A0K0K1B3 111 aa9.02□□□□□ -0.97
SHROOM3-201ENST00000296043 GATA4P43694 442 aa9.02□□□□□ -0.97
SHROOM3-201ENST00000296043 DKK4Q9UBT3 224 aa9.02□□□□□ -0.97
SHROOM3-201ENST00000296043 TRBV7-3A0A075B6L6 115 aa9.01□□□□□ -0.97
SHROOM3-201ENST00000296043 C1orf53Q5VUE5 145 aa9.01□□□□□ -0.97
SHROOM3-201ENST00000296043 IGKV1-17P01599 117 aa9.01□□□□□ -0.97
SHROOM3-201ENST00000296043 WFDC13Q8IUB5 93 aa9.01□□□□□ -0.97
SHROOM3-201ENST00000296043 SPRY4Q9C004 299 aa9.01□□□□□ -0.97
SHROOM3-201ENST00000296043 ZFHX2Q9C0A1 2572 aaPredicted RBP9.01□□□□□ -0.97
SHROOM3-201ENST00000296043 DEFB112Q30KQ8 113 aa9.01□□□□□ -0.97
SHROOM3-201ENST00000296043 E7EQL1 145 aa9.01□□□□□ -0.97
SHROOM3-201ENST00000296043 ZNF524Q96C55 264 aa9.01□□□□□ -0.97
SHROOM3-201ENST00000296043 PRO0628Q9UI54 55 aa9□□□□□ -0.97
SHROOM3-201ENST00000296043 DEFB136Q30KP8 78 aa9□□□□□ -0.97
SHROOM3-201ENST00000296043 IGLV2-8P01709 118 aa9□□□□□ -0.97
SHROOM3-201ENST00000296043 LINC00322Q6ZN03 302 aaPredicted RBP9□□□□□ -0.97
SHROOM3-201ENST00000296043 A8MZ25 164 aa9□□□□□ -0.97
SHROOM3-201ENST00000296043 WT1P19544 449 aaPredicted RBP9□□□□□ -0.97
SHROOM3-201ENST00000296043 NEXN-AS1Q8NBZ9 246 aa9□□□□□ -0.97
SHROOM3-201ENST00000296043 UFSP1Q6NVU6 142 aa9□□□□□ -0.97
SHROOM3-201ENST00000296043 CTSGP08311 255 aa9□□□□□ -0.97
SHROOM3-201ENST00000296043 MUC6Q6W4X9 2439 aa9□□□□□ -0.97
SHROOM3-201ENST00000296043 ZNF503-AS2A6NEH8 195 aa9□□□□□ -0.97
SHROOM3-201ENST00000296043 C4orf26Q17RF5 130 aa8.99□□□□□ -0.97
SHROOM3-201ENST00000296043 LENEPQ9Y5L5 61 aa8.99□□□□□ -0.97
SHROOM3-201ENST00000296043 B4DSR2 109 aa8.99□□□□□ -0.97
SHROOM3-201ENST00000296043 APRG1Q8IVJ8 170 aa8.99□□□□□ -0.97
SHROOM3-201ENST00000296043 Q6JHZ5 121 aa8.99□□□□□ -0.97
SHROOM3-201ENST00000296043 K7EIM0 57 aa8.99□□□□□ -0.97
SHROOM3-201ENST00000296043 RSPO1Q2MKA7 263 aaPredicted RBP8.99□□□□□ -0.97
SHROOM3-201ENST00000296043 CELA1Q9UNI1 258 aa8.99□□□□□ -0.97
SHROOM3-201ENST00000296043 SPAG11BQ08648 103 aa8.99□□□□□ -0.97
SHROOM3-201ENST00000296043 LINC00311Q8N616 119 aa8.99□□□□□ -0.97
SHROOM3-201ENST00000296043 IGHV4-38-2P0DP08 117 aa8.99□□□□□ -0.97
SHROOM3-201ENST00000296043 BPESC1Q9GZL8 116 aa8.98□□□□□ -0.97
SHROOM3-201ENST00000296043 J3QLI3 93 aa8.98□□□□□ -0.97
SHROOM3-201ENST00000296043 MDFICQ9P1T7 246 aa8.98□□□□□ -0.97
SHROOM3-201ENST00000296043 I3L2K1 104 aa8.98□□□□□ -0.97
SHROOM3-201ENST00000296043 VWCEQ96DN2 955 aa8.98□□□□□ -0.97
SHROOM3-201ENST00000296043 A0A087WVE0 104 aa8.97□□□□□ -0.97
SHROOM3-201ENST00000296043 C1orf158Q8N1D5 194 aa8.97□□□□□ -0.97
SHROOM3-201ENST00000296043 TMEM105Q8N8V8 129 aa8.97□□□□□ -0.97
SHROOM3-201ENST00000296043 HOXB4P17483 251 aaPredicted RBP8.97□□□□□ -0.97
SHROOM3-201ENST00000296043 IGHV4-61A0A0C4DH41 118 aa8.97□□□□□ -0.97
SHROOM3-201ENST00000296043 LINC00308Q8TCZ7 52 aa8.96□□□□□ -0.97
SHROOM3-201ENST00000296043 TMEM223A0PJW6 202 aa8.96□□□□□ -0.97
SHROOM3-201ENST00000296043 TRAV7A0A075B6U4 112 aa8.96□□□□□ -0.97
SHROOM3-201ENST00000296043 APOC4P55056 127 aa8.96□□□□□ -0.97
SHROOM3-201ENST00000296043 LST1O00453 97 aa8.96□□□□□ -0.97
SHROOM3-201ENST00000296043 MAPK1IP1LQ8NDC0 245 aa8.96□□□□□ -0.98
SHROOM3-201ENST00000296043 COL4A5P29400 1685 aa8.96□□□□□ -0.98
SHROOM3-201ENST00000296043 ESM1Q9NQ30 184 aa8.96□□□□□ -0.98
SHROOM3-201ENST00000296043 CCKP06307 115 aa8.95□□□□□ -0.98
SHROOM3-201ENST00000296043 DCANP1Q8TF63 244 aa8.95□□□□□ -0.98
SHROOM3-201ENST00000296043 EBI3Q14213 229 aa8.95□□□□□ -0.98
SHROOM3-201ENST00000296043 C20orf203Q8NBC4 194 aa8.95□□□□□ -0.98
SHROOM3-201ENST00000296043 ZNF22P17026 224 aaPredicted RBP8.95□□□□□ -0.98
SHROOM3-201ENST00000296043 TRBV6-5A0A0K0K1A5 114 aa8.95□□□□□ -0.98
SHROOM3-201ENST00000296043 C16orf74Q96GX8 76 aa8.95□□□□□ -0.98
SHROOM3-201ENST00000296043 IGLV3-19P01714 112 aa8.95□□□□□ -0.98
SHROOM3-201ENST00000296043 C11orf1Q9H5F2 150 aa8.94□□□□□ -0.98
SHROOM3-201ENST00000296043 LINC00467Q9BRT7 94 aa8.94□□□□□ -0.98
SHROOM3-201ENST00000296043 PRSS33Q8NF86 280 aa8.94□□□□□ -0.98
SHROOM3-201ENST00000296043 IGLV3-1P01715 115 aa8.94□□□□□ -0.98
SHROOM3-201ENST00000296043 ABCA12Q86UK0 2595 aa8.94□□□□□ -0.98
SHROOM3-201ENST00000296043 LINC01356Q8N9X3 169 aa8.94□□□□□ -0.98
SHROOM3-201ENST00000296043 MBD6Q96DN6 1003 aa8.93□□□□□ -0.98
SHROOM3-201ENST00000296043 DSCR9P59020 149 aa8.93□□□□□ -0.98
SHROOM3-201ENST00000296043 CDKN2A-AS1Q9UH64 79 aa8.93□□□□□ -0.98
SHROOM3-201ENST00000296043 FAM222AQ5U5X8 452 aa8.93□□□□□ -0.98
SHROOM3-201ENST00000296043 SLURP1P55000 103 aa8.93□□□□□ -0.98
SHROOM3-201ENST00000296043 WFDC10AQ9H1F0 79 aa8.93□□□□□ -0.98
SHROOM3-201ENST00000296043 U3KQK5 164 aa8.93□□□□□ -0.98
SHROOM3-201ENST00000296043 IGLV2-14P01704 120 aa8.92□□□□□ -0.98
SHROOM3-201ENST00000296043 BEAN1Q3B7T3 259 aa8.92□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms