RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 RLFQ13129 1914 aa3.56□□□□□ -1.84
SCN1A-220ENST00000641603 LY6EQ16553 131 aa3.56□□□□□ -1.84
SCN1A-220ENST00000641603 NUP210Q8TEM1 1887 aaPredicted RBP3.56□□□□□ -1.84
SCN1A-220ENST00000641603 C9orf85Q96MD7 179 aa3.56□□□□□ -1.84
SCN1A-220ENST00000641603 IGLV2-11P01706 119 aa3.56□□□□□ -1.84
SCN1A-220ENST00000641603 LINC00205P59089 165 aa3.56□□□□□ -1.84
SCN1A-220ENST00000641603 PLAC8L1A1L4L8 177 aa3.56□□□□□ -1.84
SCN1A-220ENST00000641603 PINLYPA6NC86 204 aa3.56□□□□□ -1.84
SCN1A-220ENST00000641603 B4DSR2 109 aa3.56□□□□□ -1.84
SCN1A-220ENST00000641603 PROK2Q9HC23 129 aa3.56□□□□□ -1.84
SCN1A-220ENST00000641603 RPL28P46779 137 aaKnown RBP3.55□□□□□ -1.84
SCN1A-220ENST00000641603 NDPQ00604 133 aa3.55□□□□□ -1.84
SCN1A-220ENST00000641603 ENHOQ6UWT2 76 aa3.55□□□□□ -1.84
SCN1A-220ENST00000641603 RNF185Q96GF1 192 aa3.55□□□□□ -1.84
SCN1A-220ENST00000641603 KIAA2026Q5HYC2 2103 aa3.55□□□□□ -1.84
SCN1A-220ENST00000641603 PLXND1Q9Y4D7 1925 aa3.55□□□□□ -1.84
SCN1A-220ENST00000641603 IGLV4-3A0A075B6K6 122 aa3.55□□□□□ -1.84
SCN1A-220ENST00000641603 CHKB-CPT1BH3BT56 60 aa3.55□□□□□ -1.84
SCN1A-220ENST00000641603 C3orf56Q8N813 242 aa3.55□□□□□ -1.84
SCN1A-220ENST00000641603 DPH3Q96FX2 82 aa3.55□□□□□ -1.84
SCN1A-220ENST00000641603 DYSFO75923 2080 aa3.55□□□□□ -1.84
SCN1A-220ENST00000641603 ERC2-IT1O76042 136 aa3.55□□□□□ -1.84
SCN1A-220ENST00000641603 DEFB121Q5J5C9 76 aa3.55□□□□□ -1.84
SCN1A-220ENST00000641603 PRYO14603 147 aa3.55□□□□□ -1.84
SCN1A-220ENST00000641603 URB1-AS1Q96HZ7 61 aa3.55□□□□□ -1.84
SCN1A-220ENST00000641603 CCL19Q99731 98 aa3.55□□□□□ -1.84
SCN1A-220ENST00000641603 MSRB1Q9NZV6 116 aa3.55□□□□□ -1.84
SCN1A-220ENST00000641603 SAA4P35542 130 aa3.55□□□□□ -1.84
SCN1A-220ENST00000641603 XCL1P47992 114 aa3.55□□□□□ -1.84
SCN1A-220ENST00000641603 INSL3P51460 131 aa3.55□□□□□ -1.84
SCN1A-220ENST00000641603 XCL2Q9UBD3 114 aa3.55□□□□□ -1.84
SCN1A-220ENST00000641603 COX7BP24311 80 aa3.55□□□□□ -1.84
SCN1A-220ENST00000641603 AJUBAQ96IF1 538 aa3.55□□□□□ -1.84
SCN1A-220ENST00000641603 ESM1Q9NQ30 184 aa3.55□□□□□ -1.84
SCN1A-220ENST00000641603 FREM1Q5H8C1 2179 aa3.55□□□□□ -1.84
SCN1A-220ENST00000641603 SHANK1Q9Y566 2161 aa3.55□□□□□ -1.84
SCN1A-220ENST00000641603 TFF2Q03403 129 aa3.55□□□□□ -1.84
SCN1A-220ENST00000641603 MIR7-3HGQ8N6C7 128 aa3.55□□□□□ -1.84
SCN1A-220ENST00000641603 WFDC11Q8NEX6 87 aa3.55□□□□□ -1.84
SCN1A-220ENST00000641603 LIMD2Q9BT23 127 aa3.55□□□□□ -1.84
SCN1A-220ENST00000641603 DKK4Q9UBT3 224 aa3.55□□□□□ -1.84
SCN1A-220ENST00000641603 TCF20Q9UGU0 1960 aaKnown RBP3.55□□□□□ -1.84
SCN1A-220ENST00000641603 IGLV1-47P01700 117 aa3.55□□□□□ -1.84
SCN1A-220ENST00000641603 RPL39P62891 51 aaKnown RBP3.55□□□□□ -1.84
SCN1A-220ENST00000641603 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP3.55□□□□□ -1.84
SCN1A-220ENST00000641603 KIR2DL5BQ8NHK3 375 aa3.55□□□□□ -1.84
SCN1A-220ENST00000641603 TFF1P04155 84 aa3.55□□□□□ -1.84
SCN1A-220ENST00000641603 FDCSPQ8NFU4 85 aa3.55□□□□□ -1.84
SCN1A-220ENST00000641603 C17orf77Q96MU5 243 aa3.55□□□□□ -1.84
SCN1A-220ENST00000641603 ESRGQ1W209 222 aa3.55□□□□□ -1.84
SCN1A-220ENST00000641603 PIP4P2Q8N4L2 257 aa3.54□□□□□ -1.84
SCN1A-220ENST00000641603 K7ERS5 55 aa3.54□□□□□ -1.84
SCN1A-220ENST00000641603 SPINK13Q1W4C9 94 aa3.54□□□□□ -1.84
SCN1A-220ENST00000641603 IGHV3-73A0A0B4J1V6 119 aa3.54□□□□□ -1.84
SCN1A-220ENST00000641603 CRIP3Q6Q6R5 217 aa3.54□□□□□ -1.84
SCN1A-220ENST00000641603 C16orf74Q96GX8 76 aa3.54□□□□□ -1.84
SCN1A-220ENST00000641603 ALPK3Q96L96 1907 aa3.54□□□□□ -1.84
SCN1A-220ENST00000641603 DEFB124Q8NES8 71 aa3.54□□□□□ -1.84
SCN1A-220ENST00000641603 PSMG3-AS1Q96PY0 264 aa3.54□□□□□ -1.84
SCN1A-220ENST00000641603 TPSG1Q9NRR2 321 aa3.54□□□□□ -1.84
SCN1A-220ENST00000641603 OBSL1O75147 1896 aa3.54□□□□□ -1.84
SCN1A-220ENST00000641603 POLR2KP53803 58 aaKnown RBP3.54□□□□□ -1.84
SCN1A-220ENST00000641603 CASC2Q6XLA1 102 aa3.54□□□□□ -1.84
SCN1A-220ENST00000641603 LINC00322Q6ZN03 302 aaPredicted RBP3.54□□□□□ -1.84
SCN1A-220ENST00000641603 CACNA1HO95180 2353 aa3.54□□□□□ -1.84
SCN1A-220ENST00000641603 Q8N7P7 452 aa3.54□□□□□ -1.84
SCN1A-220ENST00000641603 BRWD1-AS2P59051 145 aa3.54□□□□□ -1.84
SCN1A-220ENST00000641603 CFHR3Q02985 330 aa3.54□□□□□ -1.84
SCN1A-220ENST00000641603 Q0VFX4 171 aa3.54□□□□□ -1.84
SCN1A-220ENST00000641603 SPTSSBQ8NFR3 76 aa3.54□□□□□ -1.84
SCN1A-220ENST00000641603 KIF26AQ9ULI4 1882 aaPredicted RBP3.54□□□□□ -1.84
SCN1A-220ENST00000641603 IGFL4Q6B9Z1 124 aa3.54□□□□□ -1.84
SCN1A-220ENST00000641603 GPHB5Q86YW7 130 aa3.54□□□□□ -1.84
SCN1A-220ENST00000641603 GNRH2O43555 120 aa3.53□□□□□ -1.84
SCN1A-220ENST00000641603 GNLYP22749 145 aa3.53□□□□□ -1.84
SCN1A-220ENST00000641603 KLK5Q9Y337 293 aaPredicted RBP3.53□□□□□ -1.84
SCN1A-220ENST00000641603 A6NED7 52 aa3.53□□□□□ -1.84
SCN1A-220ENST00000641603 TRBV7-6A0A0J9YX20 115 aa3.53□□□□□ -1.84
SCN1A-220ENST00000641603 DEFB131AP59861 70 aa3.53□□□□□ -1.84
SCN1A-220ENST00000641603 PIP4P1Q86T03 277 aa3.53□□□□□ -1.84
SCN1A-220ENST00000641603 IGKV2D-29A0A075B6S2 120 aaPredicted RBP3.53□□□□□ -1.84
SCN1A-220ENST00000641603 IGKV2-29A2NJV5 120 aaPredicted RBP3.53□□□□□ -1.84
SCN1A-220ENST00000641603 COL4A6Q14031 1691 aa3.53□□□□□ -1.84
SCN1A-220ENST00000641603 ETDCA0A1B0GVM5 59 aa3.53□□□□□ -1.84
SCN1A-220ENST00000641603 MPLKIPQ8TAP9 179 aa3.53□□□□□ -1.84
SCN1A-220ENST00000641603 CRYGDP07320 174 aa3.53□□□□□ -1.85
SCN1A-220ENST00000641603 IGIPA6NJ69 53 aa3.52□□□□□ -1.85
SCN1A-220ENST00000641603 CD164Q04900 197 aa3.52□□□□□ -1.85
SCN1A-220ENST00000641603 LYPD2Q6UXB3 125 aa3.52□□□□□ -1.85
SCN1A-220ENST00000641603 Q6ZQT7 251 aa3.52□□□□□ -1.85
SCN1A-220ENST00000641603 DEFB123Q8N688 67 aa3.52□□□□□ -1.85
SCN1A-220ENST00000641603 PRSS33Q8NF86 280 aa3.52□□□□□ -1.85
SCN1A-220ENST00000641603 IGHV3-53P01767 116 aa3.52□□□□□ -1.85
SCN1A-220ENST00000641603 COL4A3Q01955 1670 aa3.52□□□□□ -1.85
SCN1A-220ENST00000641603 M0QY20 66 aa3.52□□□□□ -1.85
SCN1A-220ENST00000641603 DHRS4-AS1Q9P1J3 65 aa3.52□□□□□ -1.85
SCN1A-220ENST00000641603 KLK9Q9UKQ9 250 aa3.52□□□□□ -1.85
SCN1A-220ENST00000641603 A0A087WZ39 114 aa3.52□□□□□ -1.85
SCN1A-220ENST00000641603 RITA1Q96K30 269 aa3.52□□□□□ -1.85
SCN1A-220ENST00000641603 PLXNB3Q9ULL4 1909 aa3.52□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms