RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 LINC00299Q6ZSB3 139 aa9.56□□□□□ -0.88
SYNE2-228ENST00000639659 NTM-AS1Q6ZSK4 140 aa9.56□□□□□ -0.88
SYNE2-228ENST00000639659 AQP10Q96PS8 301 aa9.56□□□□□ -0.88
SYNE2-228ENST00000639659 ZNF471Q9BX82 626 aaPredicted RBP9.56□□□□□ -0.88
SYNE2-228ENST00000639659 AP5S1Q9NUS5 200 aa9.56□□□□□ -0.88
SYNE2-228ENST00000639659 TRBV25-1A0A075B6N4 114 aa9.55□□□□□ -0.88
SYNE2-228ENST00000639659 IGHV3-64A0A075B6Q5 118 aa9.55□□□□□ -0.88
SYNE2-228ENST00000639659 A0A087WYN8 130 aa9.55□□□□□ -0.88
SYNE2-228ENST00000639659 AKR1C8PQ5T2L2 129 aa9.55□□□□□ -0.88
SYNE2-228ENST00000639659 SPANXN1Q5VSR9 72 aa9.55□□□□□ -0.88
SYNE2-228ENST00000639659 CLRN3Q8NCR9 226 aa9.55□□□□□ -0.88
SYNE2-228ENST00000639659 STOML3Q8TAV4 291 aa9.55□□□□□ -0.88
SYNE2-228ENST00000639659 NKX6-2Q9C056 277 aaPredicted RBP9.55□□□□□ -0.88
SYNE2-228ENST00000639659 PRR34Q9NV39 138 aa9.55□□□□□ -0.88
SYNE2-228ENST00000639659 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.54□□□□□ -0.88
SYNE2-228ENST00000639659 BORCS7-ASMTA0A0B4J1R7 106 aa9.54□□□□□ -0.88
SYNE2-228ENST00000639659 TRBV6-1A0A0K0K1D8 114 aa9.54□□□□□ -0.88
SYNE2-228ENST00000639659 PHOX2AO14813 284 aa9.54□□□□□ -0.88
SYNE2-228ENST00000639659 REG3AQ06141 175 aa9.54□□□□□ -0.88
SYNE2-228ENST00000639659 TMEM97Q5BJF2 176 aa9.54□□□□□ -0.88
SYNE2-228ENST00000639659 PRR27Q6MZM9 219 aa9.54□□□□□ -0.88
SYNE2-228ENST00000639659 KRTAP26-1Q6PEX3 210 aa9.54□□□□□ -0.88
SYNE2-228ENST00000639659 C7orf33Q8WU49 177 aa9.54□□□□□ -0.88
SYNE2-228ENST00000639659 ALG5Q9Y673 324 aa9.54□□□□□ -0.88
SYNE2-228ENST00000639659 MAP1LC3B2A6NCE7 125 aa9.53□□□□□ -0.88
SYNE2-228ENST00000639659 LTAP01374 205 aa9.53□□□□□ -0.88
SYNE2-228ENST00000639659 MGPP08493 103 aa9.53□□□□□ -0.88
SYNE2-228ENST00000639659 SMIM17P0DL12 118 aa9.53□□□□□ -0.88
SYNE2-228ENST00000639659 COX8CQ7Z4L0 72 aa9.53□□□□□ -0.88
SYNE2-228ENST00000639659 MAP1LC3BQ9GZQ8 125 aa9.53□□□□□ -0.88
SYNE2-228ENST00000639659 FXYD6-FXYD2A0A087WZ82 144 aa9.52□□□□□ -0.89
SYNE2-228ENST00000639659 IGHV1-24A0A0C4DH33 117 aa9.52□□□□□ -0.89
SYNE2-228ENST00000639659 CNBPP62633 177 aaKnown RBP9.52□□□□□ -0.89
SYNE2-228ENST00000639659 CIRBPQ14011 172 aaKnown RBP9.52□□□□□ -0.89
SYNE2-228ENST00000639659 INO80EQ8NBZ0 244 aaPredicted RBP9.52□□□□□ -0.89
SYNE2-228ENST00000639659 SPACA4Q8TDM5 124 aa9.52□□□□□ -0.89
SYNE2-228ENST00000639659 GTSF1Q8WW33 167 aa9.52□□□□□ -0.89
SYNE2-228ENST00000639659 Q5BKY6 102 aa9.51□□□□□ -0.89
SYNE2-228ENST00000639659 KIF25-AS1Q9Y6Z4 181 aa9.51□□□□□ -0.89
SYNE2-228ENST00000639659 IGKV2-24A0A0C4DH68 120 aa9.5□□□□□ -0.89
SYNE2-228ENST00000639659 RNF185Q96GF1 192 aa9.5□□□□□ -0.89
SYNE2-228ENST00000639659 AP1S3Q96PC3 154 aa9.5□□□□□ -0.89
SYNE2-228ENST00000639659 MED28Q9H204 178 aa9.5□□□□□ -0.89
SYNE2-228ENST00000639659 VAX2Q9UIW0 290 aa9.5□□□□□ -0.89
SYNE2-228ENST00000639659 IGKV3OR2-268A0A0C4DH90 116 aa9.49□□□□□ -0.89
SYNE2-228ENST00000639659 A0A1B0GV50 99 aa9.49□□□□□ -0.89
SYNE2-228ENST00000639659 SLPIP03973 132 aa9.49□□□□□ -0.89
SYNE2-228ENST00000639659 MAJINQ3KP22 176 aa9.49□□□□□ -0.89
SYNE2-228ENST00000639659 C20orf203Q8NBC4 194 aa9.49□□□□□ -0.89
SYNE2-228ENST00000639659 LYPD6BQ8NI32 183 aa9.49□□□□□ -0.89
SYNE2-228ENST00000639659 TPPP3Q9BW30 176 aa9.49□□□□□ -0.89
SYNE2-228ENST00000639659 IGLV4-60A0A075B6I1 120 aa9.48□□□□□ -0.89
SYNE2-228ENST00000639659 TRAV8-4A0A0B4J246 113 aa9.48□□□□□ -0.89
SYNE2-228ENST00000639659 SNAI2O43623 268 aa9.48□□□□□ -0.89
SYNE2-228ENST00000639659 PAGE4O60829 102 aa9.48□□□□□ -0.89
SYNE2-228ENST00000639659 P01737 135 aa9.48□□□□□ -0.89
SYNE2-228ENST00000639659 SULT1A2P50226 295 aa9.48□□□□□ -0.89
SYNE2-228ENST00000639659 IQCJQ1A5X6 159 aa9.48□□□□□ -0.89
SYNE2-228ENST00000639659 WDR73Q6P4I2 378 aa9.48□□□□□ -0.89
SYNE2-228ENST00000639659 TMEM243Q9BU79 118 aa9.48□□□□□ -0.89
SYNE2-228ENST00000639659 GFRA4Q9GZZ7 299 aa9.48□□□□□ -0.89
SYNE2-228ENST00000639659 TNXBP22105 4242 aa9.48□□□□□ -0.89
SYNE2-228ENST00000639659 SCO2A0A1W2PP80 73 aa9.47□□□□□ -0.89
SYNE2-228ENST00000639659 NKX2-5P52952 324 aaPredicted RBP9.47□□□□□ -0.89
SYNE2-228ENST00000639659 COX6A2Q02221 97 aa9.47□□□□□ -0.89
SYNE2-228ENST00000639659 HIGD2BQ4VC39 106 aa9.47□□□□□ -0.89
SYNE2-228ENST00000639659 PLAC8Q9NZF1 115 aa9.47□□□□□ -0.89
SYNE2-228ENST00000639659 UBE2L6O14933 153 aa9.46□□□□□ -0.9
SYNE2-228ENST00000639659 CXCL1P09341 107 aa9.46□□□□□ -0.9
SYNE2-228ENST00000639659 OR5AL1P0C617 328 aa9.46□□□□□ -0.9
SYNE2-228ENST00000639659 BAGE2Q86Y30 109 aa9.46□□□□□ -0.9
SYNE2-228ENST00000639659 TCEAL7Q9BRU2 100 aa9.46□□□□□ -0.9
SYNE2-228ENST00000639659 GAGE12HA6NDE8 117 aa9.45□□□□□ -0.9
SYNE2-228ENST00000639659 H7C1H1 209 aa9.45□□□□□ -0.9
SYNE2-228ENST00000639659 FHITP49789 147 aa9.45□□□□□ -0.9
SYNE2-228ENST00000639659 PRR3P79522 188 aaKnown RBP9.45□□□□□ -0.9
SYNE2-228ENST00000639659 SUMO4Q6EEV6 95 aa9.45□□□□□ -0.9
SYNE2-228ENST00000639659 LINC01600Q96MT4 127 aa9.45□□□□□ -0.9
SYNE2-228ENST00000639659 SSBP4Q9BWG4 385 aaPredicted RBP9.45□□□□□ -0.9
SYNE2-228ENST00000639659 PFDN1O60925 122 aa9.44□□□□□ -0.9
SYNE2-228ENST00000639659 GZMBP10144 247 aa9.44□□□□□ -0.9
SYNE2-228ENST00000639659 STPG4Q8N801 248 aa9.44□□□□□ -0.9
SYNE2-228ENST00000639659 PRSS3P2Q8NHM4 247 aa9.44□□□□□ -0.9
SYNE2-228ENST00000639659 M0QY20 66 aa9.43□□□□□ -0.9
SYNE2-228ENST00000639659 NDUFS6O75380 124 aaKnown RBP9.43□□□□□ -0.9
SYNE2-228ENST00000639659 S100A9P06702 114 aaKnown RBP9.43□□□□□ -0.9
SYNE2-228ENST00000639659 GIPP09681 153 aaPredicted RBP9.43□□□□□ -0.9
SYNE2-228ENST00000639659 RPS10P46783 165 aaKnown RBP9.43□□□□□ -0.9
SYNE2-228ENST00000639659 C15orf56Q8N910 161 aa9.43□□□□□ -0.9
SYNE2-228ENST00000639659 AMTP48728 403 aa9.42□□□□□ -0.9
SYNE2-228ENST00000639659 CFAP161Q6P656 301 aa9.42□□□□□ -0.9
SYNE2-228ENST00000639659 A0A0J9YXV3 536 aa9.41□□□□□ -0.9
SYNE2-228ENST00000639659 A0A1B0GUV1 79 aa9.41□□□□□ -0.9
SYNE2-228ENST00000639659 FER1L6-AS1Q8NA97 138 aa9.41□□□□□ -0.9
SYNE2-228ENST00000639659 FAM213BQ8TBF2 198 aa9.41□□□□□ -0.9
SYNE2-228ENST00000639659 SFT2D1Q8WV19 159 aa9.41□□□□□ -0.9
SYNE2-228ENST00000639659 ARPC5O15511 151 aa9.4□□□□□ -0.9
SYNE2-228ENST00000639659 GAS8-AS1O95177 125 aa9.4□□□□□ -0.9
SYNE2-228ENST00000639659 COTL1Q14019 142 aa9.4□□□□□ -0.9
SYNE2-228ENST00000639659 RASL11AQ6T310 242 aa9.4□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms