RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 PKDREJQ9NTG1 2253 aa3.01□□□□□ -1.93
SCN1A-214ENST00000637038 TRBV7-3A0A075B6L6 115 aa3.01□□□□□ -1.93
SCN1A-214ENST00000637038 H3BMG7 143 aa3.01□□□□□ -1.93
SCN1A-214ENST00000637038 COX6CP09669 75 aa3.01□□□□□ -1.93
SCN1A-214ENST00000637038 TMEM219Q86XT9 240 aa3.01□□□□□ -1.93
SCN1A-214ENST00000637038 ZFAND2AQ8N6M9 145 aa3.01□□□□□ -1.93
SCN1A-214ENST00000637038 C11orf86A6NJI1 115 aa3.01□□□□□ -1.93
SCN1A-214ENST00000637038 ETDBQ3ZM63 59 aa3.01□□□□□ -1.93
SCN1A-214ENST00000637038 TTTY13Q9BZ97 58 aa3.01□□□□□ -1.93
SCN1A-214ENST00000637038 GTSF1LQ9H1H1 148 aa3.01□□□□□ -1.93
SCN1A-214ENST00000637038 PLXNB1O43157 2135 aa3□□□□□ -1.93
SCN1A-214ENST00000637038 IGKV3-7A0A075B6H7 116 aa3□□□□□ -1.93
SCN1A-214ENST00000637038 IGHV4OR15-8A0A075B7B6 117 aa3□□□□□ -1.93
SCN1A-214ENST00000637038 A0A087WW49 117 aa3□□□□□ -1.93
SCN1A-214ENST00000637038 NXPH4O95158 308 aa3□□□□□ -1.93
SCN1A-214ENST00000637038 IGHV3-11P01762 117 aa3□□□□□ -1.93
SCN1A-214ENST00000637038 IGHG2P01859 326 aa3□□□□□ -1.93
SCN1A-214ENST00000637038 TIRAPP58753 221 aa3□□□□□ -1.93
SCN1A-214ENST00000637038 LMO4P61968 165 aa3□□□□□ -1.93
SCN1A-214ENST00000637038 LY6EQ16553 131 aa3□□□□□ -1.93
SCN1A-214ENST00000637038 PHLDA1Q8WV24 401 aaPredicted RBP3□□□□□ -1.93
SCN1A-214ENST00000637038 ROS1P08922 2347 aa3□□□□□ -1.93
SCN1A-214ENST00000637038 SDHAF1A6NFY7 115 aa3□□□□□ -1.93
SCN1A-214ENST00000637038 SMIM9A6NGZ8 99 aa3□□□□□ -1.93
SCN1A-214ENST00000637038 WFDC2Q14508 124 aa3□□□□□ -1.93
SCN1A-214ENST00000637038 FAM74A4Q5TZK3 123 aa3□□□□□ -1.93
SCN1A-214ENST00000637038 ZFP2Q6ZN57 461 aa3□□□□□ -1.93
SCN1A-214ENST00000637038 MAPKAPK5-AS1Q8N8E1 139 aa3□□□□□ -1.93
SCN1A-214ENST00000637038 RPL39LQ96EH5 51 aaKnown RBP3□□□□□ -1.93
SCN1A-214ENST00000637038 ERG28Q9UKR5 140 aa3□□□□□ -1.93
SCN1A-214ENST00000637038 COL12A1Q99715 3063 aa3□□□□□ -1.93
SCN1A-214ENST00000637038 TRBV6-5A0A0K0K1A5 114 aa3□□□□□ -1.93
SCN1A-214ENST00000637038 J3QQQ9 107 aa3□□□□□ -1.93
SCN1A-214ENST00000637038 LEPROTO15243 131 aa3□□□□□ -1.93
SCN1A-214ENST00000637038 RNASE1P07998 156 aaKnown RBP3□□□□□ -1.93
SCN1A-214ENST00000637038 SPATA25Q9BR10 227 aa3□□□□□ -1.93
SCN1A-214ENST00000637038 PRO1854Q9UHT4 67 aa3□□□□□ -1.93
SCN1A-214ENST00000637038 USP9YO00507 2555 aaPredicted RBP2.99□□□□□ -1.93
SCN1A-214ENST00000637038 IGHV3OR16-10A0A075B7F0 116 aa2.99□□□□□ -1.93
SCN1A-214ENST00000637038 H3BUX3 64 aa2.99□□□□□ -1.93
SCN1A-214ENST00000637038 I3L3M4 83 aa2.99□□□□□ -1.93
SCN1A-214ENST00000637038 GAS8-AS1O95177 125 aa2.99□□□□□ -1.93
SCN1A-214ENST00000637038 SUMO4Q6EEV6 95 aa2.99□□□□□ -1.93
SCN1A-214ENST00000637038 APRG1Q8IVJ8 170 aa2.99□□□□□ -1.93
SCN1A-214ENST00000637038 C10orf105Q8TEF2 133 aa2.99□□□□□ -1.93
SCN1A-214ENST00000637038 RNF183Q96D59 192 aa2.99□□□□□ -1.93
SCN1A-214ENST00000637038 ZNF256Q9Y2P7 627 aaPredicted RBP2.99□□□□□ -1.93
SCN1A-214ENST00000637038 TEP1Q99973 2627 aaKnown RBP2.99□□□□□ -1.93
SCN1A-214ENST00000637038 SETXQ7Z333 2677 aaKnown RBP2.99□□□□□ -1.93
SCN1A-214ENST00000637038 IGHV1OR15-1A0A075B7D0 117 aa2.99□□□□□ -1.93
SCN1A-214ENST00000637038 ATXN8Q156A1 80 aa2.99□□□□□ -1.93
SCN1A-214ENST00000637038 GPHB5Q86YW7 130 aa2.99□□□□□ -1.93
SCN1A-214ENST00000637038 KIR2DL5BQ8NHK3 375 aa2.99□□□□□ -1.93
SCN1A-214ENST00000637038 C20orf173Q96LM9 149 aa2.99□□□□□ -1.93
SCN1A-214ENST00000637038 LINC00527Q9UJ94 153 aa2.99□□□□□ -1.93
SCN1A-214ENST00000637038 ZNF580Q9UK33 172 aa2.99□□□□□ -1.93
SCN1A-214ENST00000637038 FBN2P35556 2912 aa2.99□□□□□ -1.93
SCN1A-214ENST00000637038 TRAV12-3A0A0B4J271 114 aa2.99□□□□□ -1.93
SCN1A-214ENST00000637038 A6NDX4 124 aa2.99□□□□□ -1.93
SCN1A-214ENST00000637038 M0R2P5 195 aa2.99□□□□□ -1.93
SCN1A-214ENST00000637038 GNRH2O43555 120 aa2.99□□□□□ -1.93
SCN1A-214ENST00000637038 IGHV4-31P0DP07 118 aa2.99□□□□□ -1.93
SCN1A-214ENST00000637038 GAGE5Q13069 117 aa2.99□□□□□ -1.93
SCN1A-214ENST00000637038 GAGE6Q13070 117 aa2.99□□□□□ -1.93
SCN1A-214ENST00000637038 NSUN5P1Q3KNT7 163 aa2.99□□□□□ -1.93
SCN1A-214ENST00000637038 TEN1Q86WV5 123 aa2.99□□□□□ -1.93
SCN1A-214ENST00000637038 C10orf126Q8N4M7 172 aa2.99□□□□□ -1.93
SCN1A-214ENST00000637038 POM121L12Q8N7R1 296 aa2.99□□□□□ -1.93
SCN1A-214ENST00000637038 AJUBAQ96IF1 538 aa2.99□□□□□ -1.93
SCN1A-214ENST00000637038 FBN3Q75N90 2809 aa2.99□□□□□ -1.93
SCN1A-214ENST00000637038 KLLNB2CW77 178 aa2.99□□□□□ -1.93
SCN1A-214ENST00000637038 LGALS9O00182 355 aa2.99□□□□□ -1.93
SCN1A-214ENST00000637038 SOCS3O14543 225 aa2.99□□□□□ -1.93
SCN1A-214ENST00000637038 RS1O15537 224 aa2.99□□□□□ -1.93
SCN1A-214ENST00000637038 PF4P02776 101 aa2.99□□□□□ -1.93
SCN1A-214ENST00000637038 FOXI1Q12951 378 aa2.99□□□□□ -1.93
SCN1A-214ENST00000637038 CIRBPQ14011 172 aaKnown RBP2.99□□□□□ -1.93
SCN1A-214ENST00000637038 PRR9Q5T870 116 aa2.99□□□□□ -1.93
SCN1A-214ENST00000637038 AMTNQ6UX39 209 aa2.99□□□□□ -1.93
SCN1A-214ENST00000637038 SPANXA1Q9NS26 97 aa2.99□□□□□ -1.93
SCN1A-214ENST00000637038 SELENOKQ9Y6D0 94 aa2.99□□□□□ -1.93
SCN1A-214ENST00000637038 ABCA1O95477 2261 aa2.99□□□□□ -1.93
SCN1A-214ENST00000637038 HIVEP3Q5T1R4 2406 aa2.98□□□□□ -1.93
SCN1A-214ENST00000637038 TRBV27A0A0K0K1C4 114 aa2.98□□□□□ -1.93
SCN1A-214ENST00000637038 MSMBP08118 114 aa2.98□□□□□ -1.93
SCN1A-214ENST00000637038 CD28P10747 220 aa2.98□□□□□ -1.93
SCN1A-214ENST00000637038 RPL13AP40429 203 aaKnown RBP2.98□□□□□ -1.93
SCN1A-214ENST00000637038 UBE2D1P51668 147 aa2.98□□□□□ -1.93
SCN1A-214ENST00000637038 UNQ9165/PRO28630Q6UXU0 137 aa2.98□□□□□ -1.93
SCN1A-214ENST00000637038 BRD3OSQ6XYD6 125 aa2.98□□□□□ -1.93
SCN1A-214ENST00000637038 LCNL1Q6ZST4 164 aa2.98□□□□□ -1.93
SCN1A-214ENST00000637038 NDUFA11Q86Y39 141 aa2.98□□□□□ -1.93
SCN1A-214ENST00000637038 SLC25A29Q8N8R3 303 aa2.98□□□□□ -1.93
SCN1A-214ENST00000637038 SPAG8Q99932 426 aaPredicted RBP2.98□□□□□ -1.93
SCN1A-214ENST00000637038 B9D2Q9BPU9 175 aa2.98□□□□□ -1.93
SCN1A-214ENST00000637038 ANKHD1Q8IWZ3 2542 aaKnown RBP2.98□□□□□ -1.93
SCN1A-214ENST00000637038 A0A087WWL8 130 aa2.98□□□□□ -1.93
SCN1A-214ENST00000637038 A0A0J9YY99 117 aa2.98□□□□□ -1.93
SCN1A-214ENST00000637038 RHODO00212 210 aa2.98□□□□□ -1.93
SCN1A-214ENST00000637038 RNASE3P12724 160 aaKnown RBP2.98□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms