RNA–Protein interactions for RNA: ENST00000635973.1

CLN3-243, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,084 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-243ENST00000635973 LINC00862A6NCI5 91 aa12.43□□□□□ -0.42
CLN3-243ENST00000635973 H7C1H1 209 aa12.43□□□□□ -0.42
CLN3-243ENST00000635973 NUP35Q8NFH5 326 aa12.43□□□□□ -0.42
CLN3-243ENST00000635973 Q9H8V8 135 aa12.43□□□□□ -0.42
CLN3-243ENST00000635973 Q9UF83 564 aa12.43□□□□□ -0.42
CLN3-243ENST00000635973 PPP1R2P9O14990 202 aa12.42□□□□□ -0.42
CLN3-243ENST00000635973 LINC00694P0DN24 101 aa12.42□□□□□ -0.42
CLN3-243ENST00000635973 RIGQ13278 110 aa12.42□□□□□ -0.42
CLN3-243ENST00000635973 GTSF1LQ9H1H1 148 aa12.42□□□□□ -0.42
CLN3-243ENST00000635973 PKD1P98161 4303 aa12.41□□□□□ -0.42
CLN3-243ENST00000635973 TRBV7-3A0A075B6L6 115 aa12.41□□□□□ -0.42
CLN3-243ENST00000635973 SMIM27A0A1W2PRY6 76 aa12.41□□□□□ -0.42
CLN3-243ENST00000635973 MT-ND4LP03901 98 aa12.41□□□□□ -0.42
CLN3-243ENST00000635973 ADCYAP1P18509 176 aa12.41□□□□□ -0.42
CLN3-243ENST00000635973 TIRAPP58753 221 aa12.41□□□□□ -0.42
CLN3-243ENST00000635973 LINC00315P59091 139 aa12.41□□□□□ -0.42
CLN3-243ENST00000635973 TTC32Q5I0X7 151 aa12.41□□□□□ -0.42
CLN3-243ENST00000635973 SUMO4Q6EEV6 95 aa12.41□□□□□ -0.42
CLN3-243ENST00000635973 NEXN-AS1Q8NBZ9 246 aa12.41□□□□□ -0.42
CLN3-243ENST00000635973 SIVA1O15304 175 aa12.4□□□□□ -0.42
CLN3-243ENST00000635973 TNP2Q05952 138 aa12.4□□□□□ -0.42
CLN3-243ENST00000635973 OR10J3Q5JRS4 329 aa12.4□□□□□ -0.42
CLN3-243ENST00000635973 SREK1IP1Q8N9Q2 155 aaPredicted RBP12.4□□□□□ -0.42
CLN3-243ENST00000635973 TRAV8-6A0A0B4J262 113 aa12.39□□□□□ -0.43
CLN3-243ENST00000635973 ANAPC16Q96DE5 110 aa12.39□□□□□ -0.43
CLN3-243ENST00000635973 SEC11CQ9BY50 192 aa12.39□□□□□ -0.43
CLN3-243ENST00000635973 C16orf90A8MZG2 172 aa12.38□□□□□ -0.43
CLN3-243ENST00000635973 M0QY20 66 aa12.38□□□□□ -0.43
CLN3-243ENST00000635973 UBE2D3P61077 147 aa12.38□□□□□ -0.43
CLN3-243ENST00000635973 UBE2D2P62837 147 aa12.38□□□□□ -0.43
CLN3-243ENST00000635973 LELP1Q5T871 98 aa12.38□□□□□ -0.43
CLN3-243ENST00000635973 RASL11AQ6T310 242 aa12.38□□□□□ -0.43
CLN3-243ENST00000635973 WFDC10BQ8IUB3 73 aa12.38□□□□□ -0.43
CLN3-243ENST00000635973 TNFRSF18Q9Y5U5 241 aa12.38□□□□□ -0.43
CLN3-243ENST00000635973 ABCA13Q86UQ4 5058 aa12.36□□□□□ -0.43
CLN3-243ENST00000635973 A0A087WWC5 75 aa12.36□□□□□ -0.43
CLN3-243ENST00000635973 TRAV26-2A0A0B4J265 109 aa12.36□□□□□ -0.43
CLN3-243ENST00000635973 DNAJC30Q96LL9 226 aa12.36□□□□□ -0.43
CLN3-243ENST00000635973 TMEM191AQ9H0A3 160 aa12.36□□□□□ -0.43
CLN3-243ENST00000635973 IGHV3-38A0A0C4DH36 116 aa12.35□□□□□ -0.43
CLN3-243ENST00000635973 CAMPP49913 170 aa12.35□□□□□ -0.43
CLN3-243ENST00000635973 MRPL54Q6P161 138 aaKnown RBP12.35□□□□□ -0.43
CLN3-243ENST00000635973 A0A1B0GW15 77 aa12.34□□□□□ -0.43
CLN3-243ENST00000635973 S100A8P05109 93 aa12.34□□□□□ -0.43
CLN3-243ENST00000635973 DAZ4Q86SG3 579 aaKnown RBP12.34□□□□□ -0.43
CLN3-243ENST00000635973 NIT2Q9NQR4 276 aa12.34□□□□□ -0.43
CLN3-243ENST00000635973 DAZ3Q9NR90 486 aaKnown RBP12.34□□□□□ -0.43
CLN3-243ENST00000635973 TRAV9-2A0A087WT02 112 aa12.33□□□□□ -0.44
CLN3-243ENST00000635973 HBBP68871 147 aa12.33□□□□□ -0.44
CLN3-243ENST00000635973 AMN1Q8IY45 258 aa12.33□□□□□ -0.44
CLN3-243ENST00000635973 GATD1Q8NB37 220 aa12.33□□□□□ -0.44
CLN3-243ENST00000635973 DNAH10OSP0CZ25 163 aa12.32□□□□□ -0.44
CLN3-243ENST00000635973 TMEM97Q5BJF2 176 aa12.31□□□□□ -0.44
CLN3-243ENST00000635973 FRZBQ92765 325 aa12.31□□□□□ -0.44
CLN3-243ENST00000635973 KRTAP1-5Q9BYS1 174 aa12.31□□□□□ -0.44
CLN3-243ENST00000635973 CTDSP1Q9GZU7 261 aa12.31□□□□□ -0.44
CLN3-243ENST00000635973 CARHSP1Q9Y2V2 147 aaKnown RBP12.31□□□□□ -0.44
CLN3-243ENST00000635973 NDUFA5Q16718 116 aa12.3□□□□□ -0.44
CLN3-243ENST00000635973 LINC01556Q5JQF7 62 aa12.3□□□□□ -0.44
CLN3-243ENST00000635973 KCNIP4Q6PIL6 250 aa12.3□□□□□ -0.44
CLN3-243ENST00000635973 ATP5L2Q7Z4Y8 100 aa12.3□□□□□ -0.44
CLN3-243ENST00000635973 RPL39LQ96EH5 51 aaKnown RBP12.3□□□□□ -0.44
CLN3-243ENST00000635973 MRAP2Q96G30 205 aa12.3□□□□□ -0.44
CLN3-243ENST00000635973 RNF185Q96GF1 192 aa12.3□□□□□ -0.44
CLN3-243ENST00000635973 URGCP-MRPS24S4R325 110 aa12.3□□□□□ -0.44
CLN3-243ENST00000635973 TRBV6-8A0A0A6YYG3 113 aa12.29□□□□□ -0.44
CLN3-243ENST00000635973 IGHV3-30P01768 117 aa12.29□□□□□ -0.44
CLN3-243ENST00000635973 IGHV3-33P01772 117 aa12.29□□□□□ -0.44
CLN3-243ENST00000635973 IGHV3-30-3P0DP02 117 aa12.29□□□□□ -0.44
CLN3-243ENST00000635973 IGHV3-30-5P0DP03 117 aa12.29□□□□□ -0.44
CLN3-243ENST00000635973 BTF3P20290 206 aaKnown RBP12.29□□□□□ -0.44
CLN3-243ENST00000635973 RAB4AP20338 218 aa12.29□□□□□ -0.44
CLN3-243ENST00000635973 C10orf91Q5T1B1 145 aa12.29□□□□□ -0.44
CLN3-243ENST00000635973 SPATA12Q7Z6I5 190 aa12.29□□□□□ -0.44
CLN3-243ENST00000635973 C10orf126Q8N4M7 172 aa12.29□□□□□ -0.44
CLN3-243ENST00000635973 A0A1B0GXF2 115 aa12.28□□□□□ -0.44
CLN3-243ENST00000635973 K7EP13 123 aa12.28□□□□□ -0.44
CLN3-243ENST00000635973 FAM104BQ5XKR9 115 aa12.28□□□□□ -0.44
CLN3-243ENST00000635973 TRBV25-1A0A075B6N4 114 aa12.27□□□□□ -0.45
CLN3-243ENST00000635973 NCR2O95944 276 aa12.27□□□□□ -0.45
CLN3-243ENST00000635973 APOC3P02656 99 aa12.27□□□□□ -0.45
CLN3-243ENST00000635973 BTF3L4Q96K17 158 aa12.27□□□□□ -0.45
CLN3-243ENST00000635973 IMMP2LQ96T52 175 aa12.27□□□□□ -0.45
CLN3-243ENST00000635973 CHCHD5Q9BSY4 110 aa12.27□□□□□ -0.45
CLN3-243ENST00000635973 KRTAP4-5Q9BYR2 181 aa12.27□□□□□ -0.45
CLN3-243ENST00000635973 A0A087WX48 190 aa12.26□□□□□ -0.45
CLN3-243ENST00000635973 IGHV1-24A0A0C4DH33 117 aa12.26□□□□□ -0.45
CLN3-243ENST00000635973 C7orf77A4D0Y5 90 aa12.26□□□□□ -0.45
CLN3-243ENST00000635973 SMKR1H3BMG3 65 aa12.26□□□□□ -0.45
CLN3-243ENST00000635973 CDK2AP2O75956 126 aa12.26□□□□□ -0.45
CLN3-243ENST00000635973 S100PP25815 95 aa12.26□□□□□ -0.45
CLN3-243ENST00000635973 COTL1Q14019 142 aa12.26□□□□□ -0.45
CLN3-243ENST00000635973 RHEBQ15382 184 aa12.26□□□□□ -0.45
CLN3-243ENST00000635973 MRPL51Q4U2R6 128 aaKnown RBP12.26□□□□□ -0.45
CLN3-243ENST00000635973 CLRN3Q8NCR9 226 aa12.26□□□□□ -0.45
CLN3-243ENST00000635973 ST20Q9HBF5 79 aa12.26□□□□□ -0.45
CLN3-243ENST00000635973 RPS10P5Q9NQ39 176 aa12.26□□□□□ -0.45
CLN3-243ENST00000635973 SDHAF1A6NFY7 115 aa12.25□□□□□ -0.45
CLN3-243ENST00000635973 TMEM262E9PQX1 116 aa12.25□□□□□ -0.45
CLN3-243ENST00000635973 GAS8-AS1O95177 125 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 70.7 ms