RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 EVI2AP22794 236 aa11.37□□□□□ -0.59
CCDC28A-202ENST00000611852 GAGE1Q13065 139 aa11.37□□□□□ -0.59
CCDC28A-202ENST00000611852 GAGE4Q13068 117 aa11.37□□□□□ -0.59
CCDC28A-202ENST00000611852 GAGE5Q13069 117 aa11.37□□□□□ -0.59
CCDC28A-202ENST00000611852 GAGE13Q4V321 117 aa11.37□□□□□ -0.59
CCDC28A-202ENST00000611852 Q9H8V8 135 aa11.37□□□□□ -0.59
CCDC28A-202ENST00000611852 TRBV10-1A0A0K0K1A3 114 aa11.36□□□□□ -0.59
CCDC28A-202ENST00000611852 F5H697 171 aa11.36□□□□□ -0.59
CCDC28A-202ENST00000611852 ATP6V0E2Q8NHE4 81 aa11.35□□□□□ -0.59
CCDC28A-202ENST00000611852 M0R2N4 97 aa11.35□□□□□ -0.59
CCDC28A-202ENST00000611852 MGPP08493 103 aa11.35□□□□□ -0.59
CCDC28A-202ENST00000611852 TIRAPP58753 221 aa11.35□□□□□ -0.59
CCDC28A-202ENST00000611852 Q6ZR54 194 aa11.35□□□□□ -0.59
CCDC28A-202ENST00000611852 DPH3P1Q9H4G8 78 aa11.35□□□□□ -0.59
CCDC28A-202ENST00000611852 RPS10P46783 165 aaKnown RBP11.34□□□□□ -0.59
CCDC28A-202ENST00000611852 BORCS7Q96B45 105 aa11.34□□□□□ -0.59
CCDC28A-202ENST00000611852 GTSF1LQ9H1H1 148 aa11.34□□□□□ -0.59
CCDC28A-202ENST00000611852 TRBV7-3A0A075B6L6 115 aa11.33□□□□□ -0.6
CCDC28A-202ENST00000611852 A0A1B0GUT8 65 aa11.33□□□□□ -0.6
CCDC28A-202ENST00000611852 SMIM27A0A1W2PRY6 76 aa11.33□□□□□ -0.6
CCDC28A-202ENST00000611852 RPL36AP83881 106 aaKnown RBP11.33□□□□□ -0.6
CCDC28A-202ENST00000611852 NUP35Q8NFH5 326 aa11.33□□□□□ -0.6
CCDC28A-202ENST00000611852 RPL36ALQ969Q0 106 aaKnown RBP11.33□□□□□ -0.6
CCDC28A-202ENST00000611852 NAT8BQ9UHF3 227 aa11.33□□□□□ -0.6
CCDC28A-202ENST00000611852 NBDYA0A0U1RRE5 68 aa11.32□□□□□ -0.6
CCDC28A-202ENST00000611852 C1orf196B1AJZ1 125 aa11.32□□□□□ -0.6
CCDC28A-202ENST00000611852 SIVA1O15304 175 aa11.32□□□□□ -0.6
CCDC28A-202ENST00000611852 SUMO4Q6EEV6 95 aa11.32□□□□□ -0.6
CCDC28A-202ENST00000611852 NEXN-AS1Q8NBZ9 246 aa11.32□□□□□ -0.6
CCDC28A-202ENST00000611852 DNAH6Q9C0G6 4158 aa11.31□□□□□ -0.6
CCDC28A-202ENST00000611852 M0QY20 66 aa11.31□□□□□ -0.6
CCDC28A-202ENST00000611852 RAB5BP61020 215 aa11.31□□□□□ -0.6
CCDC28A-202ENST00000611852 UBE2D3P61077 147 aa11.31□□□□□ -0.6
CCDC28A-202ENST00000611852 UBE2D2P62837 147 aa11.31□□□□□ -0.6
CCDC28A-202ENST00000611852 SMIM15Q7Z3B0 74 aa11.3□□□□□ -0.6
CCDC28A-202ENST00000611852 WFDC10BQ8IUB3 73 aa11.3□□□□□ -0.6
CCDC28A-202ENST00000611852 H7C1H1 209 aa11.3□□□□□ -0.6
CCDC28A-202ENST00000611852 LELP1Q5T871 98 aa11.3□□□□□ -0.6
CCDC28A-202ENST00000611852 KRTAP1-5Q9BYS1 174 aa11.3□□□□□ -0.6
CCDC28A-202ENST00000611852 RIGQ13278 110 aa11.28□□□□□ -0.6
CCDC28A-202ENST00000611852 TTC32Q5I0X7 151 aa11.28□□□□□ -0.6
CCDC28A-202ENST00000611852 OR10J3Q5JRS4 329 aa11.28□□□□□ -0.6
CCDC28A-202ENST00000611852 RASL11AQ6T310 242 aa11.28□□□□□ -0.6
CCDC28A-202ENST00000611852 TRAV8-6A0A0B4J262 113 aa11.27□□□□□ -0.61
CCDC28A-202ENST00000611852 COX19Q49B96 90 aa11.27□□□□□ -0.61
CCDC28A-202ENST00000611852 DNAJC30Q96LL9 226 aa11.27□□□□□ -0.61
CCDC28A-202ENST00000611852 TMEM191AQ9H0A3 160 aa11.27□□□□□ -0.61
CCDC28A-202ENST00000611852 TRAV26-2A0A0B4J265 109 aa11.26□□□□□ -0.61
CCDC28A-202ENST00000611852 DNAH10OSP0CZ25 163 aa11.26□□□□□ -0.61
CCDC28A-202ENST00000611852 ATP5L2Q7Z4Y8 100 aa11.26□□□□□ -0.61
CCDC28A-202ENST00000611852 GATD1Q8NB37 220 aa11.26□□□□□ -0.61
CCDC28A-202ENST00000611852 TNFRSF18Q9Y5U5 241 aa11.26□□□□□ -0.61
CCDC28A-202ENST00000611852 IGHV3-38A0A0C4DH36 116 aa11.25□□□□□ -0.61
CCDC28A-202ENST00000611852 TRGC2P03986 189 aa11.25□□□□□ -0.61
CCDC28A-202ENST00000611852 NIT2Q9NQR4 276 aa11.25□□□□□ -0.61
CCDC28A-202ENST00000611852 MT-ND6P03923 174 aa11.25□□□□□ -0.61
CCDC28A-202ENST00000611852 C1orf134Q5TEV5 83 aa11.25□□□□□ -0.61
CCDC28A-202ENST00000611852 MRPL54Q6P161 138 aaKnown RBP11.25□□□□□ -0.61
CCDC28A-202ENST00000611852 DAZ4Q86SG3 579 aaKnown RBP11.25□□□□□ -0.61
CCDC28A-202ENST00000611852 DAZ3Q9NR90 486 aaKnown RBP11.25□□□□□ -0.61
CCDC28A-202ENST00000611852 A0A1B0GW15 77 aa11.24□□□□□ -0.61
CCDC28A-202ENST00000611852 RTL8CO15255 209 aa11.24□□□□□ -0.61
CCDC28A-202ENST00000611852 LINC01556Q5JQF7 62 aa11.24□□□□□ -0.61
CCDC28A-202ENST00000611852 FRZBQ92765 325 aa11.24□□□□□ -0.61
CCDC28A-202ENST00000611852 RNF185Q96GF1 192 aa11.24□□□□□ -0.61
CCDC28A-202ENST00000611852 K7EP13 123 aa11.23□□□□□ -0.61
CCDC28A-202ENST00000611852 RAB4AP20338 218 aa11.23□□□□□ -0.61
CCDC28A-202ENST00000611852 AMN1Q8IY45 258 aa11.23□□□□□ -0.61
CCDC28A-202ENST00000611852 GNB1LQ9BYB4 327 aa11.23□□□□□ -0.61
CCDC28A-202ENST00000611852 TRAPPC1Q9Y5R8 145 aa11.23□□□□□ -0.61
CCDC28A-202ENST00000611852 TRAV9-2A0A087WT02 112 aa11.22□□□□□ -0.61
CCDC28A-202ENST00000611852 TRBV6-8A0A0A6YYG3 113 aa11.22□□□□□ -0.61
CCDC28A-202ENST00000611852 A0A1B0GXF2 115 aa11.22□□□□□ -0.61
CCDC28A-202ENST00000611852 HLA-DQA1P01909 254 aa11.22□□□□□ -0.61
CCDC28A-202ENST00000611852 CAMPP49913 170 aa11.22□□□□□ -0.61
CCDC28A-202ENST00000611852 HBBP68871 147 aa11.22□□□□□ -0.61
CCDC28A-202ENST00000611852 C6orf223Q8N319 242 aa11.22□□□□□ -0.61
CCDC28A-202ENST00000611852 RPL39LQ96EH5 51 aaKnown RBP11.22□□□□□ -0.61
CCDC28A-202ENST00000611852 GAS8-AS1O95177 125 aa11.21□□□□□ -0.61
CCDC28A-202ENST00000611852 S100A6P06703 90 aa11.21□□□□□ -0.61
CCDC28A-202ENST00000611852 NTM-AS1Q6ZSK4 140 aa11.21□□□□□ -0.61
CCDC28A-202ENST00000611852 S100A8P05109 93 aa11.2□□□□□ -0.62
CCDC28A-202ENST00000611852 BTF3P20290 206 aaKnown RBP11.2□□□□□ -0.62
CCDC28A-202ENST00000611852 FABP9Q0Z7S8 132 aa11.2□□□□□ -0.62
CCDC28A-202ENST00000611852 TMEM97Q5BJF2 176 aa11.2□□□□□ -0.62
CCDC28A-202ENST00000611852 IGHV3-30P01768 117 aa11.19□□□□□ -0.62
CCDC28A-202ENST00000611852 IGHV3-33P01772 117 aa11.19□□□□□ -0.62
CCDC28A-202ENST00000611852 IGHV3-30-3P0DP02 117 aa11.19□□□□□ -0.62
CCDC28A-202ENST00000611852 IGHV3-30-5P0DP03 117 aa11.19□□□□□ -0.62
CCDC28A-202ENST00000611852 FAM104BQ5XKR9 115 aa11.19□□□□□ -0.62
CCDC28A-202ENST00000611852 TMEM136Q6ZRR5 245 aa11.19□□□□□ -0.62
CCDC28A-202ENST00000611852 LINC00336Q6ZUF6 198 aa11.19□□□□□ -0.62
CCDC28A-202ENST00000611852 Q8N3U1 123 aa11.19□□□□□ -0.62
CCDC28A-202ENST00000611852 C10orf126Q8N4M7 172 aa11.19□□□□□ -0.62
CCDC28A-202ENST00000611852 MRAP2Q96G30 205 aa11.19□□□□□ -0.62
CCDC28A-202ENST00000611852 MRPL18Q9H0U6 180 aaKnown RBP11.19□□□□□ -0.62
CCDC28A-202ENST00000611852 DNAH2Q9P225 4427 aa11.19□□□□□ -0.62
CCDC28A-202ENST00000611852 PHOX2AO14813 284 aa11.19□□□□□ -0.62
CCDC28A-202ENST00000611852 HIST1H2BKO60814 126 aa11.19□□□□□ -0.62
CCDC28A-202ENST00000611852 HIST1H2BJP06899 126 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 170.6 ms