RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 IGHV3-30-3P0DP02 117 aa13.14□□□□□ -0.31
UPF1-212ENST00000601689 IGHV3-30-5P0DP03 117 aa13.14□□□□□ -0.31
UPF1-212ENST00000601689 NEXN-AS1Q8NBZ9 246 aa13.14□□□□□ -0.31
UPF1-212ENST00000601689 CNFNQ9BYD5 112 aa13.14□□□□□ -0.31
UPF1-212ENST00000601689 KIF25-AS1Q9Y6Z4 181 aa13.14□□□□□ -0.31
UPF1-212ENST00000601689 A0A1B0GVY2 172 aa13.13□□□□□ -0.31
UPF1-212ENST00000601689 PSCAO43653 123 aa13.13□□□□□ -0.31
UPF1-212ENST00000601689 PKIAP61925 76 aa13.13□□□□□ -0.31
UPF1-212ENST00000601689 GFRA4Q9GZZ7 299 aa13.13□□□□□ -0.31
UPF1-212ENST00000601689 Q9UF83 564 aa13.13□□□□□ -0.31
UPF1-212ENST00000601689 A0A087WX48 190 aa13.12□□□□□ -0.31
UPF1-212ENST00000601689 FAM231BA6NCW3 169 aa13.12□□□□□ -0.31
UPF1-212ENST00000601689 ELOBQ15370 118 aa13.12□□□□□ -0.31
UPF1-212ENST00000601689 ADIRFQ15847 76 aa13.12□□□□□ -0.31
UPF1-212ENST00000601689 TSKUQ8WUA8 353 aa13.12□□□□□ -0.31
UPF1-212ENST00000601689 PGLYRP4Q96LB8 373 aa13.12□□□□□ -0.31
UPF1-212ENST00000601689 IBA57-AS1B1ANH7 110 aa13.11□□□□□ -0.31
UPF1-212ENST00000601689 LAGE3Q14657 143 aa13.11□□□□□ -0.31
UPF1-212ENST00000601689 RASL11AQ6T310 242 aa13.11□□□□□ -0.31
UPF1-212ENST00000601689 CHCHD7Q9BUK0 85 aa13.11□□□□□ -0.31
UPF1-212ENST00000601689 TMEM262E9PQX1 116 aa13.1□□□□□ -0.31
UPF1-212ENST00000601689 FOXA3P55318 350 aaPredicted RBP13.1□□□□□ -0.31
UPF1-212ENST00000601689 SUMO4Q6EEV6 95 aa13.1□□□□□ -0.31
UPF1-212ENST00000601689 GTSF1Q8WW33 167 aa13.1□□□□□ -0.31
UPF1-212ENST00000601689 BIRC6Q9NR09 4857 aa13.1□□□□□ -0.31
UPF1-212ENST00000601689 DNAH17Q9UFH2 4485 aa13.1□□□□□ -0.31
UPF1-212ENST00000601689 TRBV6-8A0A0A6YYG3 113 aa13.09□□□□□ -0.31
UPF1-212ENST00000601689 TRAV8-3A0A0A6YYJ7 113 aa13.09□□□□□ -0.31
UPF1-212ENST00000601689 M0QY20 66 aa13.09□□□□□ -0.31
UPF1-212ENST00000601689 RPL23P62829 140 aaKnown RBP13.09□□□□□ -0.31
UPF1-212ENST00000601689 FRZBQ92765 325 aa13.09□□□□□ -0.31
UPF1-212ENST00000601689 ISOC2Q96AB3 205 aa13.09□□□□□ -0.31
UPF1-212ENST00000601689 TM2D2Q9BX73 214 aa13.09□□□□□ -0.31
UPF1-212ENST00000601689 NIT2Q9NQR4 276 aa13.09□□□□□ -0.31
UPF1-212ENST00000601689 A0A1B0GUT8 65 aa13.08□□□□□ -0.32
UPF1-212ENST00000601689 HIGD1CA8MV81 97 aa13.08□□□□□ -0.32
UPF1-212ENST00000601689 RMI2Q96E14 147 aa13.08□□□□□ -0.32
UPF1-212ENST00000601689 Q9HAA7 133 aa13.08□□□□□ -0.32
UPF1-212ENST00000601689 FAT2Q9NYQ8 4349 aa13.07□□□□□ -0.32
UPF1-212ENST00000601689 TRBV25-1A0A075B6N4 114 aa13.07□□□□□ -0.32
UPF1-212ENST00000601689 RIGQ13278 110 aa13.07□□□□□ -0.32
UPF1-212ENST00000601689 NIT1Q86X76 327 aa13.07□□□□□ -0.32
UPF1-212ENST00000601689 CHCHD5Q9BSY4 110 aa13.07□□□□□ -0.32
UPF1-212ENST00000601689 COX11Q9Y6N1 276 aa13.07□□□□□ -0.32
UPF1-212ENST00000601689 C16orf90A8MZG2 172 aa13.06□□□□□ -0.32
UPF1-212ENST00000601689 SRSF3P84103 164 aaKnown RBP13.06□□□□□ -0.32
UPF1-212ENST00000601689 Q6ZRN7 208 aaPredicted RBP13.06□□□□□ -0.32
UPF1-212ENST00000601689 NAT8BQ9UHF3 227 aa13.06□□□□□ -0.32
UPF1-212ENST00000601689 HECTD4Q9Y4D8 3996 aa13.05□□□□□ -0.32
UPF1-212ENST00000601689 C9JQL5 133 aa13.05□□□□□ -0.32
UPF1-212ENST00000601689 SPATA12Q7Z6I5 190 aa13.05□□□□□ -0.32
UPF1-212ENST00000601689 IGHV1-24A0A0C4DH33 117 aa13.04□□□□□ -0.32
UPF1-212ENST00000601689 V9GYV3 84 aa13.04□□□□□ -0.32
UPF1-212ENST00000601689 Q0VG73 95 aa13.03□□□□□ -0.32
UPF1-212ENST00000601689 CLLU1Q5K131 121 aa13.03□□□□□ -0.32
UPF1-212ENST00000601689 PGPEP1Q9NXJ5 209 aa13.03□□□□□ -0.32
UPF1-212ENST00000601689 CRPP02741 224 aa13.02□□□□□ -0.33
UPF1-212ENST00000601689 KLK12Q9UKR0 248 aa13.02□□□□□ -0.33
UPF1-212ENST00000601689 UBE2L6O14933 153 aa13.01□□□□□ -0.33
UPF1-212ENST00000601689 PPP1R2P9O14990 202 aa13.01□□□□□ -0.33
UPF1-212ENST00000601689 PNRC1Q12796 327 aaPredicted RBP13.01□□□□□ -0.33
UPF1-212ENST00000601689 COTL1Q14019 142 aa13.01□□□□□ -0.33
UPF1-212ENST00000601689 NUP35Q8NFH5 326 aa13.01□□□□□ -0.33
UPF1-212ENST00000601689 TMEM191AQ9H0A3 160 aa13.01□□□□□ -0.33
UPF1-212ENST00000601689 A0A087WTM6 91 aa13□□□□□ -0.33
UPF1-212ENST00000601689 IQCJQ1A5X6 159 aa13□□□□□ -0.33
UPF1-212ENST00000601689 GATD1Q8NB37 220 aa13□□□□□ -0.33
UPF1-212ENST00000601689 A0A1B0GW15 77 aa12.99□□□□□ -0.33
UPF1-212ENST00000601689 ANGP03950 147 aaKnown RBP12.99□□□□□ -0.33
UPF1-212ENST00000601689 S100A8P05109 93 aa12.99□□□□□ -0.33
UPF1-212ENST00000601689 CDPF1Q6NVV7 123 aa12.99□□□□□ -0.33
UPF1-212ENST00000601689 UBE2WQ96B02 151 aa12.99□□□□□ -0.33
UPF1-212ENST00000601689 TMEM243Q9BU79 118 aa12.99□□□□□ -0.33
UPF1-212ENST00000601689 TRAV26-2A0A0B4J265 109 aa12.98□□□□□ -0.33
UPF1-212ENST00000601689 SMIM27A0A1W2PRY6 76 aa12.98□□□□□ -0.33
UPF1-212ENST00000601689 PPP1R17O96001 155 aa12.98□□□□□ -0.33
UPF1-212ENST00000601689 IGKV2D-24A0A075B6R9 120 aa12.97□□□□□ -0.33
UPF1-212ENST00000601689 NTM-AS1Q6ZSK4 140 aa12.97□□□□□ -0.33
UPF1-212ENST00000601689 Q8N3U1 123 aa12.97□□□□□ -0.33
UPF1-212ENST00000601689 MRAP2Q96G30 205 aa12.97□□□□□ -0.33
UPF1-212ENST00000601689 PKD1P98161 4303 aa12.97□□□□□ -0.33
UPF1-212ENST00000601689 NCR2O95944 276 aa12.96□□□□□ -0.33
UPF1-212ENST00000601689 AMTP48728 403 aa12.96□□□□□ -0.33
UPF1-212ENST00000601689 GAGE6Q13070 117 aa12.96□□□□□ -0.33
UPF1-212ENST00000601689 MPV17L2Q567V2 206 aa12.96□□□□□ -0.33
UPF1-212ENST00000601689 ATRAIDQ6UW56 229 aa12.96□□□□□ -0.33
UPF1-212ENST00000601689 UQCC3Q6UW78 93 aa12.96□□□□□ -0.33
UPF1-212ENST00000601689 C1orf43Q9BWL3 253 aa12.96□□□□□ -0.33
UPF1-212ENST00000601689 ST20Q9HBF5 79 aa12.96□□□□□ -0.33
UPF1-212ENST00000601689 MT-ND4LP03901 98 aa12.95□□□□□ -0.34
UPF1-212ENST00000601689 PMCHP20382 165 aa12.95□□□□□ -0.34
UPF1-212ENST00000601689 ANAPC16Q96DE5 110 aa12.95□□□□□ -0.34
UPF1-212ENST00000601689 PKHD1P08F94 4074 aa12.94□□□□□ -0.34
UPF1-212ENST00000601689 F8W036 122 aa12.94□□□□□ -0.34
UPF1-212ENST00000601689 RAB4AP20338 218 aa12.94□□□□□ -0.34
UPF1-212ENST00000601689 RPL39LQ96EH5 51 aaKnown RBP12.94□□□□□ -0.34
UPF1-212ENST00000601689 SDHAF1A6NFY7 115 aa12.93□□□□□ -0.34
UPF1-212ENST00000601689 I3L3M4 83 aa12.93□□□□□ -0.34
UPF1-212ENST00000601689 APCSP02743 223 aa12.93□□□□□ -0.34
UPF1-212ENST00000601689 CAMPP49913 170 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 61.2 ms