RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, human

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHKBP1-223	ENST00000600552	KCNRG	Q8N5I3	272 aa		11.46	□□□□□ -0.57
SHKBP1-223	ENST00000600552	USP17L23	D6RBM5	183 aa		11.45	□□□□□ -0.58
SHKBP1-223	ENST00000600552	ATRAID	Q6UW56	229 aa		11.45	□□□□□ -0.58
SHKBP1-223	ENST00000600552	TMUB2	Q71RG4	321 aa		11.45	□□□□□ -0.58
SHKBP1-223	ENST00000600552	MBD3L1	Q8WWY6	194 aa		11.45	□□□□□ -0.58
SHKBP1-223	ENST00000600552	KRTAP29-1	A8MX34	341 aa	Predicted RBP	11.44	□□□□□ -0.58
SHKBP1-223	ENST00000600552	MGP	P08493	103 aa		11.44	□□□□□ -0.58
SHKBP1-223	ENST00000600552	H2AFB1	P0C5Y9	115 aa		11.44	□□□□□ -0.58
SHKBP1-223	ENST00000600552	DERL1	Q9BUN8	251 aa		11.44	□□□□□ -0.58
SHKBP1-223	ENST00000600552	KANTR	A0A1W2PQU2	76 aa		11.43	□□□□□ -0.58
SHKBP1-223	ENST00000600552	UMAD1	C9J7I0	102 aa		11.43	□□□□□ -0.58
SHKBP1-223	ENST00000600552	GZMB	P10144	247 aa		11.43	□□□□□ -0.58
SHKBP1-223	ENST00000600552	SNAI2	O43623	268 aa		11.42	□□□□□ -0.58
SHKBP1-223	ENST00000600552	RPL35	P42766	123 aa	Known RBP	11.42	□□□□□ -0.58
SHKBP1-223	ENST00000600552	NTM-AS1	Q6ZSK4	140 aa		11.42	□□□□□ -0.58
SHKBP1-223	ENST00000600552	LINC00269	Q8N2A0	174 aa		11.42	□□□□□ -0.58
SHKBP1-223	ENST00000600552	MLST8	Q9BVC4	326 aa		11.42	□□□□□ -0.58
SHKBP1-223	ENST00000600552	CXCL1	P09341	107 aa		11.41	□□□□□ -0.58
SHKBP1-223	ENST00000600552	OR5AL1	P0C617	328 aa		11.41	□□□□□ -0.58
SHKBP1-223	ENST00000600552	PKIA	P61925	76 aa		11.41	□□□□□ -0.58
SHKBP1-223	ENST00000600552	RBX1	P62877	108 aa		11.41	□□□□□ -0.58
SHKBP1-223	ENST00000600552	DAZAP1	Q96EP5	407 aa	Known RBP	11.41	□□□□□ -0.58
SHKBP1-223	ENST00000600552	AP1S3	Q96PC3	154 aa		11.41	□□□□□ -0.58
SHKBP1-223	ENST00000600552	SSBP4	Q9BWG4	385 aa	Predicted RBP	11.41	□□□□□ -0.58
SHKBP1-223	ENST00000600552	GNG13	Q9P2W3	67 aa		11.41	□□□□□ -0.58
SHKBP1-223	ENST00000600552	TRBV25-1	A0A075B6N4	114 aa		11.4	□□□□□ -0.58
SHKBP1-223	ENST00000600552		A0A0D9SG52	128 aa		11.4	□□□□□ -0.58
SHKBP1-223	ENST00000600552	BCL2L11	O43521	198 aa		11.4	□□□□□ -0.58
SHKBP1-223	ENST00000600552	PRSS1	P07477	247 aa		11.4	□□□□□ -0.58
SHKBP1-223	ENST00000600552	CCL20	P78556	96 aa		11.4	□□□□□ -0.58
SHKBP1-223	ENST00000600552	MIA	Q16674	131 aa		11.4	□□□□□ -0.58
SHKBP1-223	ENST00000600552	IGLV10-54	A0A075B6I4	117 aa		11.39	□□□□□ -0.59
SHKBP1-223	ENST00000600552	ZNF345	Q14585	488 aa		11.39	□□□□□ -0.59
SHKBP1-223	ENST00000600552	TMEM97	Q5BJF2	176 aa		11.39	□□□□□ -0.59
SHKBP1-223	ENST00000600552	KIF25-AS1	Q9Y6Z4	181 aa		11.39	□□□□□ -0.59
SHKBP1-223	ENST00000600552	RAB5C	P51148	216 aa		11.38	□□□□□ -0.59
SHKBP1-223	ENST00000600552	RPL37A	P61513	92 aa	Known RBP	11.38	□□□□□ -0.59
SHKBP1-223	ENST00000600552	OR2D3	Q8NGH3	330 aa		11.38	□□□□□ -0.59
SHKBP1-223	ENST00000600552	RAB19	A4D1S5	217 aa		11.37	□□□□□ -0.59
SHKBP1-223	ENST00000600552	KRTAP10-4	P60372	401 aa	Predicted RBP	11.37	□□□□□ -0.59
SHKBP1-223	ENST00000600552	CENPW	Q5EE01	88 aa		11.37	□□□□□ -0.59
SHKBP1-223	ENST00000600552	FER1L6-AS1	Q8NA97	138 aa		11.37	□□□□□ -0.59
SHKBP1-223	ENST00000600552	VAX2	Q9UIW0	290 aa		11.37	□□□□□ -0.59
SHKBP1-223	ENST00000600552	IGHV1-24	A0A0C4DH33	117 aa		11.36	□□□□□ -0.59
SHKBP1-223	ENST00000600552	HMSD	A8MTL9	139 aa		11.36	□□□□□ -0.59
SHKBP1-223	ENST00000600552	NKX2-5	P52952	324 aa	Predicted RBP	11.36	□□□□□ -0.59
SHKBP1-223	ENST00000600552	EIF5A	P63241	154 aa	Known RBP	11.36	□□□□□ -0.59
SHKBP1-223	ENST00000600552	SUMO4	Q6EEV6	95 aa		11.36	□□□□□ -0.59
SHKBP1-223	ENST00000600552	DPH3	Q96FX2	82 aa		11.35	□□□□□ -0.59
SHKBP1-223	ENST00000600552	MANBAL	Q9NQG1	85 aa		11.35	□□□□□ -0.59
SHKBP1-223	ENST00000600552		H7C1H1	209 aa		11.34	□□□□□ -0.59
SHKBP1-223	ENST00000600552		M0QY20	66 aa		11.34	□□□□□ -0.59
SHKBP1-223	ENST00000600552	RPS20	P60866	119 aa	Known RBP	11.34	□□□□□ -0.59
SHKBP1-223	ENST00000600552	REG3A	Q06141	175 aa		11.34	□□□□□ -0.59
SHKBP1-223	ENST00000600552	AFDN-AS1	Q9Y6Z5	254 aa	Predicted RBP	11.34	□□□□□ -0.59
SHKBP1-223	ENST00000600552	hDV102S1	A0JD36	115 aa		11.33	□□□□□ -0.6
SHKBP1-223	ENST00000600552	GNG4	P50150	75 aa		11.33	□□□□□ -0.6
SHKBP1-223	ENST00000600552	CACNG7	P62955	275 aa		11.33	□□□□□ -0.6
SHKBP1-223	ENST00000600552	IQCJ	Q1A5X6	159 aa		11.33	□□□□□ -0.6
SHKBP1-223	ENST00000600552	DGAT2L7P	Q6IED9	249 aa		11.33	□□□□□ -0.6
SHKBP1-223	ENST00000600552	C9orf163	Q8N9P6	203 aa		11.33	□□□□□ -0.6
SHKBP1-223	ENST00000600552	PRR34	Q9NV39	138 aa		11.33	□□□□□ -0.6
SHKBP1-223	ENST00000600552	LRP1	Q07954	4544 aa	Known RBP	11.33	□□□□□ -0.6
SHKBP1-223	ENST00000600552	OXT	P01178	125 aa		11.32	□□□□□ -0.6
SHKBP1-223	ENST00000600552	IFNA1	P01562	189 aa		11.32	□□□□□ -0.6
SHKBP1-223	ENST00000600552		P01737	135 aa		11.32	□□□□□ -0.6
SHKBP1-223	ENST00000600552	IGLC6	P0CF74	106 aa		11.32	□□□□□ -0.6
SHKBP1-223	ENST00000600552	KRTAP26-1	Q6PEX3	210 aa		11.32	□□□□□ -0.6
SHKBP1-223	ENST00000600552	LYZL1	Q6UWQ5	148 aa		11.32	□□□□□ -0.6
SHKBP1-223	ENST00000600552	TMEM243	Q9BU79	118 aa		11.32	□□□□□ -0.6
SHKBP1-223	ENST00000600552	MED9	Q9NWA0	146 aa		11.32	□□□□□ -0.6
SHKBP1-223	ENST00000600552	PKHD1L1	Q86WI1	4243 aa		11.31	□□□□□ -0.6
SHKBP1-223	ENST00000600552	PANO1	I0J062	215 aa		11.31	□□□□□ -0.6
SHKBP1-223	ENST00000600552	RASL11A	Q6T310	242 aa		11.31	□□□□□ -0.6
SHKBP1-223	ENST00000600552	C11orf52	Q96A22	123 aa		11.31	□□□□□ -0.6
SHKBP1-223	ENST00000600552	IGLV4-60	A0A075B6I1	120 aa		11.3	□□□□□ -0.6
SHKBP1-223	ENST00000600552	IGKV3OR2-268	A0A0C4DH90	116 aa		11.3	□□□□□ -0.6
SHKBP1-223	ENST00000600552	XKRY2	A2RUG3	117 aa		11.3	□□□□□ -0.6
SHKBP1-223	ENST00000600552	TEX46	H3BTG2	121 aa		11.3	□□□□□ -0.6
SHKBP1-223	ENST00000600552	UBE2L6	O14933	153 aa		11.3	□□□□□ -0.6
SHKBP1-223	ENST00000600552	HNRNPA3	P51991	378 aa	Known RBP	11.3	□□□□□ -0.6
SHKBP1-223	ENST00000600552	SERTAD4-AS1	Q5TG53	156 aa		11.3	□□□□□ -0.6
SHKBP1-223	ENST00000600552	C20orf203	Q8NBC4	194 aa		11.3	□□□□□ -0.6
SHKBP1-223	ENST00000600552	GFRA4	Q9GZZ7	299 aa		11.3	□□□□□ -0.6
SHKBP1-223	ENST00000600552	FAT3	Q8TDW7	4589 aa		11.29	□□□□□ -0.6
SHKBP1-223	ENST00000600552	C19orf71	A6NCJ1	209 aa		11.29	□□□□□ -0.6
SHKBP1-223	ENST00000600552	TRGC1	P0CF51	173 aa		11.29	□□□□□ -0.6
SHKBP1-223	ENST00000600552	CLRN3	Q8NCR9	226 aa		11.29	□□□□□ -0.6
SHKBP1-223	ENST00000600552	AP5S1	Q9NUS5	200 aa		11.29	□□□□□ -0.6
SHKBP1-223	ENST00000600552		F2Z2F3	143 aa		11.28	□□□□□ -0.6
SHKBP1-223	ENST00000600552	NTF3	P20783	257 aa		11.28	□□□□□ -0.6
SHKBP1-223	ENST00000600552	AMT	P48728	403 aa		11.28	□□□□□ -0.6
SHKBP1-223	ENST00000600552	SULT1A2	P50226	295 aa		11.28	□□□□□ -0.6
SHKBP1-223	ENST00000600552	TWIST1	Q15672	202 aa		11.28	□□□□□ -0.6
SHKBP1-223	ENST00000600552	SDIM1	Q6ZPB5	146 aa		11.28	□□□□□ -0.6
SHKBP1-223	ENST00000600552	DPH3P1	Q9H4G8	78 aa		11.28	□□□□□ -0.6
SHKBP1-223	ENST00000600552	NIT2	Q9NQR4	276 aa		11.28	□□□□□ -0.6
SHKBP1-223	ENST00000600552	TRAV1-1	A0A0B4J248	108 aa		11.27	□□□□□ -0.61
SHKBP1-223	ENST00000600552	MEF2B	Q02080	365 aa	Predicted RBP	11.27	□□□□□ -0.61
SHKBP1-223	ENST00000600552	TRAV8-4	A0A0B4J246	113 aa		11.26	□□□□□ -0.61

Retrieved 100 of 20,778 RNA–protein pairs in 91.8 ms