RNA–Protein interactions for RNA: ENST00000600259.5

VRK3-220, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 572 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-220ENST00000600259 LINC00269Q8N2A0 174 aa3.85□□□□□ -1.79
VRK3-220ENST00000600259 HSD17B11Q8NBQ5 300 aa3.85□□□□□ -1.79
VRK3-220ENST00000600259 CLRN3Q8NCR9 226 aa3.85□□□□□ -1.79
VRK3-220ENST00000600259 ENKURQ8TC29 256 aa3.85□□□□□ -1.79
VRK3-220ENST00000600259 RNF185Q96GF1 192 aa3.85□□□□□ -1.79
VRK3-220ENST00000600259 PLAC8Q9NZF1 115 aa3.85□□□□□ -1.79
VRK3-220ENST00000600259 VAX2Q9UIW0 290 aa3.85□□□□□ -1.79
VRK3-220ENST00000600259 TNFSF18Q9UNG2 199 aa3.85□□□□□ -1.79
VRK3-220ENST00000600259 ZFP30Q9Y2G7 519 aa3.85□□□□□ -1.79
VRK3-220ENST00000600259 PHLDA3Q9Y5J5 127 aa3.85□□□□□ -1.79
VRK3-220ENST00000600259 KIF25-AS1Q9Y6Z4 181 aa3.85□□□□□ -1.79
VRK3-220ENST00000600259 TMSB15BA0A087X1C1 80 aa3.84□□□□□ -1.79
VRK3-220ENST00000600259 FAM74A7A6NL05 159 aa3.84□□□□□ -1.79
VRK3-220ENST00000600259 HLA-DQA1P01909 254 aa3.84□□□□□ -1.79
VRK3-220ENST00000600259 MBP02144 154 aa3.84□□□□□ -1.79
VRK3-220ENST00000600259 CRPP02741 224 aa3.84□□□□□ -1.79
VRK3-220ENST00000600259 PET100P0DJ07 73 aa3.84□□□□□ -1.79
VRK3-220ENST00000600259 TPT1P13693 172 aaKnown RBP3.84□□□□□ -1.79
VRK3-220ENST00000600259 Q5BKY6 102 aa3.84□□□□□ -1.79
VRK3-220ENST00000600259 FAM162BQ5T6X4 162 aa3.84□□□□□ -1.79
VRK3-220ENST00000600259 KCNIP4Q6PIL6 250 aa3.84□□□□□ -1.79
VRK3-220ENST00000600259 ZFP82Q8N141 532 aa3.84□□□□□ -1.79
VRK3-220ENST00000600259 C20orf203Q8NBC4 194 aa3.84□□□□□ -1.79
VRK3-220ENST00000600259 SPACA4Q8TDM5 124 aa3.84□□□□□ -1.79
VRK3-220ENST00000600259 HIST1H2BAQ96A08 127 aa3.84□□□□□ -1.79
VRK3-220ENST00000600259 AQP10Q96PS8 301 aa3.84□□□□□ -1.79
VRK3-220ENST00000600259 ACTR3CQ9C0K3 210 aaPredicted RBP3.84□□□□□ -1.79
VRK3-220ENST00000600259 PHOX2AO14813 284 aa3.83□□□□□ -1.8
VRK3-220ENST00000600259 SNAI2O43623 268 aa3.83□□□□□ -1.8
VRK3-220ENST00000600259 SSNA1O43805 119 aa3.83□□□□□ -1.8
VRK3-220ENST00000600259 LTAP01374 205 aa3.83□□□□□ -1.8
VRK3-220ENST00000600259 IFNA7P01567 189 aa3.83□□□□□ -1.8
VRK3-220ENST00000600259 UBE2G2P60604 165 aa3.83□□□□□ -1.8
VRK3-220ENST00000600259 GAGE6Q13070 117 aa3.83□□□□□ -1.8
VRK3-220ENST00000600259 IQCJQ1A5X6 159 aa3.83□□□□□ -1.8
VRK3-220ENST00000600259 CLPSL2Q6UWE3 100 aa3.83□□□□□ -1.8
VRK3-220ENST00000600259 OR10AG1Q8NH19 301 aa3.83□□□□□ -1.8
VRK3-220ENST00000600259 CHCHD5Q9BSY4 110 aa3.83□□□□□ -1.8
VRK3-220ENST00000600259 MLST8Q9BVC4 326 aa3.83□□□□□ -1.8
VRK3-220ENST00000600259 GFRA4Q9GZZ7 299 aa3.83□□□□□ -1.8
VRK3-220ENST00000600259 IGLV4-60A0A075B6I1 120 aa3.82□□□□□ -1.8
VRK3-220ENST00000600259 IGLV10-54A0A075B6I4 117 aa3.82□□□□□ -1.8
VRK3-220ENST00000600259 IGHV3-64A0A075B6Q5 118 aa3.82□□□□□ -1.8
VRK3-220ENST00000600259 MUC21A0A0G2JKD1 596 aa3.82□□□□□ -1.8
VRK3-220ENST00000600259 A0A0J9YXV3 536 aa3.82□□□□□ -1.8
VRK3-220ENST00000600259 CTXND1A0A1B0GTU2 59 aa3.82□□□□□ -1.8
VRK3-220ENST00000600259 A0A1B0GUV1 79 aa3.82□□□□□ -1.8
VRK3-220ENST00000600259 CXCL1P09341 107 aa3.82□□□□□ -1.8
VRK3-220ENST00000600259 NKX2-5P52952 324 aaPredicted RBP3.82□□□□□ -1.8
VRK3-220ENST00000600259 PKIAP61925 76 aa3.82□□□□□ -1.8
VRK3-220ENST00000600259 SRSF9Q13242 221 aaKnown RBP eCLIP3.82□□□□□ -1.8
VRK3-220ENST00000600259 TMEM97Q5BJF2 176 aa3.82□□□□□ -1.8
VRK3-220ENST00000600259 RPL7L1Q6DKI1 246 aaKnown RBP3.82□□□□□ -1.8
VRK3-220ENST00000600259 INO80EQ8NBZ0 244 aaPredicted RBP3.82□□□□□ -1.8
VRK3-220ENST00000600259 DERL1Q9BUN8 251 aa3.82□□□□□ -1.8
VRK3-220ENST00000600259 NKX6-2Q9C056 277 aaPredicted RBP3.82□□□□□ -1.8
VRK3-220ENST00000600259 LPAP08519 4548 aa3.81□□□□□ -1.8
VRK3-220ENST00000600259 TRAV8-4A0A0B4J246 113 aa3.81□□□□□ -1.8
VRK3-220ENST00000600259 MUC21A0A140T8X8 626 aa3.81□□□□□ -1.8
VRK3-220ENST00000600259 LOC105371267A0A1B0GV96 52 aa3.81□□□□□ -1.8
VRK3-220ENST00000600259 hDV102S1A0JD36 115 aa3.81□□□□□ -1.8
VRK3-220ENST00000600259 LINC00862A6NCI5 91 aa3.81□□□□□ -1.8
VRK3-220ENST00000600259 M0QY20 66 aa3.81□□□□□ -1.8
VRK3-220ENST00000600259 P01737 135 aa3.81□□□□□ -1.8
VRK3-220ENST00000600259 OR5AL1P0C617 328 aa3.81□□□□□ -1.8
VRK3-220ENST00000600259 FHITP49789 147 aa3.81□□□□□ -1.8
VRK3-220ENST00000600259 REG3AQ06141 175 aa3.81□□□□□ -1.8
VRK3-220ENST00000600259 C15orf56Q8N910 161 aa3.81□□□□□ -1.8
VRK3-220ENST00000600259 PRSS3P2Q8NHM4 247 aa3.81□□□□□ -1.8
VRK3-220ENST00000600259 DPH3Q96FX2 82 aa3.81□□□□□ -1.8
VRK3-220ENST00000600259 FMC1Q96HJ9 113 aa3.81□□□□□ -1.8
VRK3-220ENST00000600259 ZNF471Q9BX82 626 aaPredicted RBP3.81□□□□□ -1.8
VRK3-220ENST00000600259 TRBV25-1A0A075B6N4 114 aa3.8□□□□□ -1.8
VRK3-220ENST00000600259 GAS8-AS1O95177 125 aa3.8□□□□□ -1.8
VRK3-220ENST00000600259 GZMBP10144 247 aa3.8□□□□□ -1.8
VRK3-220ENST00000600259 PRR3P79522 188 aaKnown RBP3.8□□□□□ -1.8
VRK3-220ENST00000600259 COX6A2Q02221 97 aa3.8□□□□□ -1.8
VRK3-220ENST00000600259 ZNF56Q15929 161 aa3.8□□□□□ -1.8
VRK3-220ENST00000600259 WDR73Q6P4I2 378 aa3.8□□□□□ -1.8
VRK3-220ENST00000600259 SLC51BQ86UW2 128 aa3.8□□□□□ -1.8
VRK3-220ENST00000600259 ALG5Q9Y673 324 aa3.8□□□□□ -1.8
VRK3-220ENST00000600259 TRAV16A0A0A6YYK6 109 aaPredicted RBP3.79□□□□□ -1.8
VRK3-220ENST00000600259 IGHV1-24A0A0C4DH33 117 aa3.79□□□□□ -1.8
VRK3-220ENST00000600259 F5H697 171 aa3.79□□□□□ -1.8
VRK3-220ENST00000600259 RPS10P46783 165 aaKnown RBP3.79□□□□□ -1.8
VRK3-220ENST00000600259 RAB5CP51148 216 aa3.79□□□□□ -1.8
VRK3-220ENST00000600259 UBE2G1P62253 170 aa3.79□□□□□ -1.8
VRK3-220ENST00000600259 C7orf33Q8WU49 177 aa3.79□□□□□ -1.8
VRK3-220ENST00000600259 TCEAL7Q9BRU2 100 aa3.79□□□□□ -1.8
VRK3-220ENST00000600259 CYTL1Q9NRR1 136 aa3.79□□□□□ -1.8
VRK3-220ENST00000600259 AP5S1Q9NUS5 200 aa3.79□□□□□ -1.8
VRK3-220ENST00000600259 MAP1LC3B2A6NCE7 125 aa3.78□□□□□ -1.8
VRK3-220ENST00000600259 G3V3Q6 166 aa3.78□□□□□ -1.8
VRK3-220ENST00000600259 PAGE4O60829 102 aa3.78□□□□□ -1.8
VRK3-220ENST00000600259 NDUFS6O75380 124 aaKnown RBP3.78□□□□□ -1.8
VRK3-220ENST00000600259 IGLC6P0CF74 106 aa3.78□□□□□ -1.8
VRK3-220ENST00000600259 SSTP61278 116 aa3.78□□□□□ -1.8
VRK3-220ENST00000600259 CLLU1Q5K131 121 aa3.78□□□□□ -1.8
VRK3-220ENST00000600259 SPANXN1Q5VSR9 72 aa3.78□□□□□ -1.8
VRK3-220ENST00000600259 CST9LP1Q5W188 147 aa3.78□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms