RNA–Protein interactions for RNA: ENST00000598209.5

UPF1-205, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-205ENST00000598209 PKD1P98161 4303 aa9.36□□□□□ -0.91
UPF1-205ENST00000598209 SUMO4Q6EEV6 95 aa9.35□□□□□ -0.91
UPF1-205ENST00000598209 Q8N3U1 123 aa9.35□□□□□ -0.91
UPF1-205ENST00000598209 PGLYRP4Q96LB8 373 aa9.35□□□□□ -0.91
UPF1-205ENST00000598209 OSTCQ9NRP0 149 aa9.35□□□□□ -0.91
UPF1-205ENST00000598209 IBA57-AS1B1ANH7 110 aa9.34□□□□□ -0.91
UPF1-205ENST00000598209 H7C1H1 209 aa9.34□□□□□ -0.91
UPF1-205ENST00000598209 M0QY20 66 aa9.34□□□□□ -0.91
UPF1-205ENST00000598209 RPL23P62829 140 aaKnown RBP9.34□□□□□ -0.91
UPF1-205ENST00000598209 C15orf54Q8N8G6 183 aa9.34□□□□□ -0.91
UPF1-205ENST00000598209 ISOC2Q96AB3 205 aa9.34□□□□□ -0.91
UPF1-205ENST00000598209 NAT8Q9UHE5 227 aa9.34□□□□□ -0.91
UPF1-205ENST00000598209 PKHD1P08F94 4074 aa9.34□□□□□ -0.91
UPF1-205ENST00000598209 RAB14P61106 215 aa9.33□□□□□ -0.92
UPF1-205ENST00000598209 ADIRFQ15847 76 aa9.33□□□□□ -0.92
UPF1-205ENST00000598209 SREK1IP1Q8N9Q2 155 aaPredicted RBP9.33□□□□□ -0.92
UPF1-205ENST00000598209 TSKUQ8WUA8 353 aa9.33□□□□□ -0.92
UPF1-205ENST00000598209 FOXA3P55318 350 aaPredicted RBP9.32□□□□□ -0.92
UPF1-205ENST00000598209 SMIM15Q7Z3B0 74 aa9.32□□□□□ -0.92
UPF1-205ENST00000598209 NIT1Q86X76 327 aa9.32□□□□□ -0.92
UPF1-205ENST00000598209 DNAJC30Q96LL9 226 aa9.32□□□□□ -0.92
UPF1-205ENST00000598209 GFRA4Q9GZZ7 299 aa9.32□□□□□ -0.92
UPF1-205ENST00000598209 V9GYV3 84 aa9.32□□□□□ -0.92
UPF1-205ENST00000598209 TRBV6-8A0A0A6YYG3 113 aa9.31□□□□□ -0.92
UPF1-205ENST00000598209 HIGD1CA8MV81 97 aa9.31□□□□□ -0.92
UPF1-205ENST00000598209 RASL11AQ6T310 242 aa9.31□□□□□ -0.92
UPF1-205ENST00000598209 DAZ4Q86SG3 579 aaKnown RBP9.31□□□□□ -0.92
UPF1-205ENST00000598209 BORCS7Q96B45 105 aa9.31□□□□□ -0.92
UPF1-205ENST00000598209 Q9HAA7 133 aa9.31□□□□□ -0.92
UPF1-205ENST00000598209 DAZ3Q9NR90 486 aaKnown RBP9.31□□□□□ -0.92
UPF1-205ENST00000598209 URGCP-MRPS24S4R325 110 aa9.31□□□□□ -0.92
UPF1-205ENST00000598209 FAM231BA6NCW3 169 aa9.3□□□□□ -0.92
UPF1-205ENST00000598209 LAGE3Q14657 143 aa9.3□□□□□ -0.92
UPF1-205ENST00000598209 TMEM97Q5BJF2 176 aa9.3□□□□□ -0.92
UPF1-205ENST00000598209 SPATA12Q7Z6I5 190 aa9.3□□□□□ -0.92
UPF1-205ENST00000598209 DNAH11Q96DT5 4516 aa9.3□□□□□ -0.92
UPF1-205ENST00000598209 DYNC1H1Q14204 4646 aaKnown RBP9.29□□□□□ -0.92
UPF1-205ENST00000598209 A0A1B0GUT8 65 aa9.29□□□□□ -0.92
UPF1-205ENST00000598209 KCNIP4Q6PIL6 250 aa9.29□□□□□ -0.92
UPF1-205ENST00000598209 NTM-AS1Q6ZSK4 140 aa9.29□□□□□ -0.92
UPF1-205ENST00000598209 NIT2Q9NQR4 276 aa9.29□□□□□ -0.92
UPF1-205ENST00000598209 A0A087WX48 190 aa9.28□□□□□ -0.92
UPF1-205ENST00000598209 TRAV26-2A0A0B4J265 109 aa9.28□□□□□ -0.92
UPF1-205ENST00000598209 C16orf90A8MZG2 172 aa9.28□□□□□ -0.92
UPF1-205ENST00000598209 EREGO14944 169 aa9.28□□□□□ -0.92
UPF1-205ENST00000598209 PSCAO43653 123 aa9.28□□□□□ -0.92
UPF1-205ENST00000598209 CLLU1Q5K131 121 aa9.28□□□□□ -0.92
UPF1-205ENST00000598209 GATD1Q8NB37 220 aa9.28□□□□□ -0.92
UPF1-205ENST00000598209 CHCHD7Q9BUK0 85 aa9.28□□□□□ -0.92
UPF1-205ENST00000598209 A0A087WTM6 91 aa9.27□□□□□ -0.93
UPF1-205ENST00000598209 TRAV8-3A0A0A6YYJ7 113 aa9.27□□□□□ -0.93
UPF1-205ENST00000598209 TMEM262E9PQX1 116 aa9.27□□□□□ -0.93
UPF1-205ENST00000598209 KRTAP10-2P60368 255 aa9.27□□□□□ -0.93
UPF1-205ENST00000598209 IFITM2Q01629 132 aa9.27□□□□□ -0.93
UPF1-205ENST00000598209 NUP35Q8NFH5 326 aa9.27□□□□□ -0.93
UPF1-205ENST00000598209 CHCHD5Q9BSY4 110 aa9.27□□□□□ -0.93
UPF1-205ENST00000598209 KLK12Q9UKR0 248 aa9.27□□□□□ -0.93
UPF1-205ENST00000598209 TRBV25-1A0A075B6N4 114 aa9.26□□□□□ -0.93
UPF1-205ENST00000598209 RIGQ13278 110 aa9.26□□□□□ -0.93
UPF1-205ENST00000598209 ELOBQ15370 118 aa9.26□□□□□ -0.93
UPF1-205ENST00000598209 FRZBQ92765 325 aa9.26□□□□□ -0.93
UPF1-205ENST00000598209 NAT8BQ9UHF3 227 aa9.26□□□□□ -0.93
UPF1-205ENST00000598209 IGHV1-24A0A0C4DH33 117 aa9.25□□□□□ -0.93
UPF1-205ENST00000598209 SMIM27A0A1W2PRY6 76 aa9.25□□□□□ -0.93
UPF1-205ENST00000598209 PKIAP61925 76 aa9.25□□□□□ -0.93
UPF1-205ENST00000598209 IQCJQ1A5X6 159 aa9.25□□□□□ -0.93
UPF1-205ENST00000598209 MPV17L2Q567V2 206 aa9.25□□□□□ -0.93
UPF1-205ENST00000598209 RPL39LQ96EH5 51 aaKnown RBP9.25□□□□□ -0.93
UPF1-205ENST00000598209 TM2D2Q9BX73 214 aa9.25□□□□□ -0.93
UPF1-205ENST00000598209 TMEM191AQ9H0A3 160 aa9.25□□□□□ -0.93
UPF1-205ENST00000598209 GAGE6Q13070 117 aa9.24□□□□□ -0.93
UPF1-205ENST00000598209 ATRAIDQ6UW56 229 aa9.24□□□□□ -0.93
UPF1-205ENST00000598209 DEFB104AQ8WTQ1 72 aa9.24□□□□□ -0.93
UPF1-205ENST00000598209 UBE2WQ96B02 151 aa9.24□□□□□ -0.93
UPF1-205ENST00000598209 LRCOL1A6NCL2 159 aa9.23□□□□□ -0.93
UPF1-205ENST00000598209 FUSP35637 526 aaKnown RBP eCLIP9.23□□□□□ -0.93
UPF1-205ENST00000598209 COTL1Q14019 142 aa9.23□□□□□ -0.93
UPF1-205ENST00000598209 AMN1Q8IY45 258 aa9.23□□□□□ -0.93
UPF1-205ENST00000598209 RMI2Q96E14 147 aa9.23□□□□□ -0.93
UPF1-205ENST00000598209 RNF185Q96GF1 192 aa9.23□□□□□ -0.93
UPF1-205ENST00000598209 TMEM243Q9BU79 118 aa9.23□□□□□ -0.93
UPF1-205ENST00000598209 ANGP03950 147 aaKnown RBP9.22□□□□□ -0.93
UPF1-205ENST00000598209 RAB4AP20338 218 aa9.22□□□□□ -0.93
UPF1-205ENST00000598209 RBX1P62877 108 aa9.22□□□□□ -0.93
UPF1-205ENST00000598209 Q8N976 141 aa9.22□□□□□ -0.93
UPF1-205ENST00000598209 PGPEP1Q9NXJ5 209 aa9.22□□□□□ -0.93
UPF1-205ENST00000598209 IGKV2D-24A0A075B6R9 120 aa9.21□□□□□ -0.94
UPF1-205ENST00000598209 SDHAF1A6NFY7 115 aa9.21□□□□□ -0.94
UPF1-205ENST00000598209 GAS8-AS1O95177 125 aa9.21□□□□□ -0.94
UPF1-205ENST00000598209 Q0VG73 95 aa9.21□□□□□ -0.94
UPF1-205ENST00000598209 PNRC1Q12796 327 aaPredicted RBP9.21□□□□□ -0.94
UPF1-205ENST00000598209 MRAP2Q96G30 205 aa9.21□□□□□ -0.94
UPF1-205ENST00000598209 COX11Q9Y6N1 276 aa9.21□□□□□ -0.94
UPF1-205ENST00000598209 KIAA1109Q2LD37 5005 aa9.21□□□□□ -0.94
UPF1-205ENST00000598209 PPP1R2P9O14990 202 aa9.2□□□□□ -0.94
UPF1-205ENST00000598209 CRPP02741 224 aa9.2□□□□□ -0.94
UPF1-205ENST00000598209 AMTP48728 403 aa9.2□□□□□ -0.94
UPF1-205ENST00000598209 CDPF1Q6NVV7 123 aa9.2□□□□□ -0.94
UPF1-205ENST00000598209 ENHOQ6UWT2 76 aa9.2□□□□□ -0.94
UPF1-205ENST00000598209 TRBV6-5A0A0K0K1A5 114 aa9.19□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 69.2 ms