RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 EIF5AP63241 154 aaKnown RBP8.9□□□□□ -0.98
TRIM28-211ENST00000597968 BAGE2Q86Y30 109 aa8.9□□□□□ -0.98
TRIM28-211ENST00000597968 NEXN-AS1Q8NBZ9 246 aa8.9□□□□□ -0.98
TRIM28-211ENST00000597968 MUC21A0A0G2JKD1 596 aa8.89□□□□□ -0.99
TRIM28-211ENST00000597968 MUC21A0A140T8X8 626 aa8.89□□□□□ -0.99
TRIM28-211ENST00000597968 SSTP61278 116 aa8.89□□□□□ -0.99
TRIM28-211ENST00000597968 ZNF56Q15929 161 aa8.89□□□□□ -0.99
TRIM28-211ENST00000597968 DGAT2L7PQ6IED9 249 aa8.89□□□□□ -0.99
TRIM28-211ENST00000597968 SMIM17P0DL12 118 aa8.88□□□□□ -0.99
TRIM28-211ENST00000597968 SPANXN1Q5VSR9 72 aa8.88□□□□□ -0.99
TRIM28-211ENST00000597968 ENHOQ6UWT2 76 aa8.88□□□□□ -0.99
TRIM28-211ENST00000597968 OR10AG1Q8NH19 301 aa8.88□□□□□ -0.99
TRIM28-211ENST00000597968 PRR34Q9NV39 138 aa8.88□□□□□ -0.99
TRIM28-211ENST00000597968 OXTP01178 125 aa8.87□□□□□ -0.99
TRIM28-211ENST00000597968 CIRBP-AS1Q8TBR5 109 aa8.87□□□□□ -0.99
TRIM28-211ENST00000597968 SMIM12Q96EX1 92 aa8.87□□□□□ -0.99
TRIM28-211ENST00000597968 DNAJC30Q96LL9 226 aa8.87□□□□□ -0.99
TRIM28-211ENST00000597968 AP1S3Q96PC3 154 aa8.87□□□□□ -0.99
TRIM28-211ENST00000597968 DERL1Q9BUN8 251 aa8.87□□□□□ -0.99
TRIM28-211ENST00000597968 GNG13Q9P2W3 67 aa8.87□□□□□ -0.99
TRIM28-211ENST00000597968 H7C1H1 209 aa8.86□□□□□ -0.99
TRIM28-211ENST00000597968 ANGP03950 147 aaKnown RBP8.86□□□□□ -0.99
TRIM28-211ENST00000597968 RPL35P42766 123 aaKnown RBP8.86□□□□□ -0.99
TRIM28-211ENST00000597968 MPV17L2Q567V2 206 aa8.86□□□□□ -0.99
TRIM28-211ENST00000597968 SERTAD4-AS1Q5TG53 156 aa8.86□□□□□ -0.99
TRIM28-211ENST00000597968 CHCHD5Q9BSY4 110 aa8.86□□□□□ -0.99
TRIM28-211ENST00000597968 MANBALQ9NQG1 85 aa8.86□□□□□ -0.99
TRIM28-211ENST00000597968 TRBV25-1A0A075B6N4 114 aa8.85□□□□□ -0.99
TRIM28-211ENST00000597968 F5H697 171 aa8.85□□□□□ -0.99
TRIM28-211ENST00000597968 RPS20P60866 119 aaKnown RBP8.85□□□□□ -0.99
TRIM28-211ENST00000597968 IQCJQ1A5X6 159 aa8.85□□□□□ -0.99
TRIM28-211ENST00000597968 C15orf54Q8N8G6 183 aa8.85□□□□□ -0.99
TRIM28-211ENST00000597968 CLRN3Q8NCR9 226 aa8.85□□□□□ -0.99
TRIM28-211ENST00000597968 KIF25-AS1Q9Y6Z4 181 aa8.85□□□□□ -0.99
TRIM28-211ENST00000597968 RAB19A4D1S5 217 aa8.84□□□□□ -0.99
TRIM28-211ENST00000597968 GZMBP10144 247 aa8.84□□□□□ -0.99
TRIM28-211ENST00000597968 RAB5CP51148 216 aa8.84□□□□□ -0.99
TRIM28-211ENST00000597968 KRTAP10-4P60372 401 aaPredicted RBP8.84□□□□□ -0.99
TRIM28-211ENST00000597968 LINC01620Q4KN68 170 aa8.84□□□□□ -0.99
TRIM28-211ENST00000597968 C11orf52Q96A22 123 aa8.84□□□□□ -0.99
TRIM28-211ENST00000597968 TRAV8-4A0A0B4J246 113 aa8.83□□□□□ -1
TRIM28-211ENST00000597968 TRAV1-1A0A0B4J248 108 aa8.83□□□□□ -1
TRIM28-211ENST00000597968 XKRY2A2RUG3 117 aa8.83□□□□□ -1
TRIM28-211ENST00000597968 USP17L23D6RBM5 183 aa8.83□□□□□ -1
TRIM28-211ENST00000597968 TEX46H3BTG2 121 aa8.83□□□□□ -1
TRIM28-211ENST00000597968 P01737 135 aa8.83□□□□□ -1
TRIM28-211ENST00000597968 CACNG7P62955 275 aa8.83□□□□□ -1
TRIM28-211ENST00000597968 C9orf163Q8N9P6 203 aa8.83□□□□□ -1
TRIM28-211ENST00000597968 LRP1Q07954 4544 aaKnown RBP8.82□□□□□ -1
TRIM28-211ENST00000597968 FAT3Q8TDW7 4589 aa8.82□□□□□ -1
TRIM28-211ENST00000597968 IGHV1-24A0A0C4DH33 117 aa8.82□□□□□ -1
TRIM28-211ENST00000597968 A0A1B0GUV1 79 aa8.82□□□□□ -1
TRIM28-211ENST00000597968 F2Z2F3 143 aa8.82□□□□□ -1
TRIM28-211ENST00000597968 SULT1A2P50226 295 aa8.82□□□□□ -1
TRIM28-211ENST00000597968 RBX1P62877 108 aa8.82□□□□□ -1
TRIM28-211ENST00000597968 CENPWQ5EE01 88 aa8.82□□□□□ -1
TRIM28-211ENST00000597968 EIF5AL1Q6IS14 154 aaKnown RBP8.82□□□□□ -1
TRIM28-211ENST00000597968 NTM-AS1Q6ZSK4 140 aa8.82□□□□□ -1
TRIM28-211ENST00000597968 DAZAP1Q96EP5 407 aaKnown RBP8.82□□□□□ -1
TRIM28-211ENST00000597968 BIN3Q9NQY0 253 aa8.82□□□□□ -1
TRIM28-211ENST00000597968 M0QY20 66 aa8.81□□□□□ -1
TRIM28-211ENST00000597968 HLA-DQA1P01909 254 aa8.81□□□□□ -1
TRIM28-211ENST00000597968 IGLC6P0CF74 106 aa8.81□□□□□ -1
TRIM28-211ENST00000597968 TCTE3Q8IZS6 198 aa8.81□□□□□ -1
TRIM28-211ENST00000597968 FER1L6-AS1Q8NA97 138 aa8.81□□□□□ -1
TRIM28-211ENST00000597968 PGLYRP4Q96LB8 373 aa8.81□□□□□ -1
TRIM28-211ENST00000597968 PRSS1P07477 247 aa8.8□□□□□ -1
TRIM28-211ENST00000597968 TRGC1P0CF51 173 aa8.8□□□□□ -1
TRIM28-211ENST00000597968 CNBPP62633 177 aaKnown RBP8.8□□□□□ -1
TRIM28-211ENST00000597968 LINC00269Q8N2A0 174 aa8.8□□□□□ -1
TRIM28-211ENST00000597968 TPPP3Q9BW30 176 aa8.8□□□□□ -1
TRIM28-211ENST00000597968 HMCN2Q8NDA2 5059 aa8.79□□□□□ -1
TRIM28-211ENST00000597968 C19orf71A6NCJ1 209 aa8.79□□□□□ -1
TRIM28-211ENST00000597968 PDE6DO43924 150 aa8.79□□□□□ -1
TRIM28-211ENST00000597968 REG3AQ06141 175 aa8.79□□□□□ -1
TRIM28-211ENST00000597968 WDR73Q6P4I2 378 aa8.79□□□□□ -1
TRIM28-211ENST00000597968 KRTAP26-1Q6PEX3 210 aa8.79□□□□□ -1
TRIM28-211ENST00000597968 OR2D3Q8NGH3 330 aa8.79□□□□□ -1
TRIM28-211ENST00000597968 MED9Q9NWA0 146 aa8.79□□□□□ -1
TRIM28-211ENST00000597968 GNG4P50150 75 aa8.78□□□□□ -1
TRIM28-211ENST00000597968 RPL37AP61513 92 aaKnown RBP8.78□□□□□ -1
TRIM28-211ENST00000597968 MEF2BQ02080 365 aaPredicted RBP8.78□□□□□ -1
TRIM28-211ENST00000597968 RASL11AQ6T310 242 aa8.78□□□□□ -1
TRIM28-211ENST00000597968 Q6ZNX1 250 aa8.78□□□□□ -1
TRIM28-211ENST00000597968 SLC51BQ86UW2 128 aa8.78□□□□□ -1
TRIM28-211ENST00000597968 hCG_2014768A0A024R1R8 64 aa8.77□□□□□ -1.01
TRIM28-211ENST00000597968 TRBV20OR9-2A0A075B6H5 130 aa8.77□□□□□ -1.01
TRIM28-211ENST00000597968 TRAV16A0A0A6YYK6 109 aaPredicted RBP8.77□□□□□ -1.01
TRIM28-211ENST00000597968 TAGLN2P37802 199 aaKnown RBP8.77□□□□□ -1.01
TRIM28-211ENST00000597968 GAGE6Q13070 117 aa8.77□□□□□ -1.01
TRIM28-211ENST00000597968 RNF185Q96GF1 192 aa8.77□□□□□ -1.01
TRIM28-211ENST00000597968 TMEM243Q9BU79 118 aa8.77□□□□□ -1.01
TRIM28-211ENST00000597968 NIT2Q9NQR4 276 aa8.77□□□□□ -1.01
TRIM28-211ENST00000597968 IFNA1P01562 189 aa8.76□□□□□ -1.01
TRIM28-211ENST00000597968 MGPP08493 103 aa8.76□□□□□ -1.01
TRIM28-211ENST00000597968 BCL2P10415 239 aa8.76□□□□□ -1.01
TRIM28-211ENST00000597968 CIRBPQ14011 172 aaKnown RBP8.76□□□□□ -1.01
TRIM28-211ENST00000597968 SUMO4Q6EEV6 95 aa8.76□□□□□ -1.01
TRIM28-211ENST00000597968 SDIM1Q6ZPB5 146 aa8.76□□□□□ -1.01
TRIM28-211ENST00000597968 C9orf62Q8N4C0 152 aa8.76□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms