RNA–Protein interactions for RNA: ENST00000594973.5

SHKBP1-205, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 2,339 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-205ENST00000594973 F6UB75 175 aa12.82□□□□□ -0.36
SHKBP1-205ENST00000594973 NDUFV3P56181 108 aaKnown RBP12.82□□□□□ -0.36
SHKBP1-205ENST00000594973 Q6Q795 121 aa12.82□□□□□ -0.36
SHKBP1-205ENST00000594973 ZFP2Q6ZN57 461 aa12.82□□□□□ -0.36
SHKBP1-205ENST00000594973 PSMG3-AS1Q96PY0 264 aa12.82□□□□□ -0.36
SHKBP1-205ENST00000594973 IGKV3D-20A0A0C4DH25 116 aa12.82□□□□□ -0.36
SHKBP1-205ENST00000594973 RPL32P62910 135 aaKnown RBP12.82□□□□□ -0.36
SHKBP1-205ENST00000594973 GAGE2BQ13066 116 aa12.82□□□□□ -0.36
SHKBP1-205ENST00000594973 GAGE2EQ4V326 116 aa12.82□□□□□ -0.36
SHKBP1-205ENST00000594973 GAGE2DQ9UEU5 116 aa12.82□□□□□ -0.36
SHKBP1-205ENST00000594973 PDZD2O15018 2839 aa12.82□□□□□ -0.36
SHKBP1-205ENST00000594973 AKAP9Q99996 3911 aa12.81□□□□□ -0.36
SHKBP1-205ENST00000594973 J3QKU1 62 aa12.81□□□□□ -0.36
SHKBP1-205ENST00000594973 OR10J6PQ8NGY7 276 aa12.81□□□□□ -0.36
SHKBP1-205ENST00000594973 PRR9Q5T870 116 aa12.8□□□□□ -0.36
SHKBP1-205ENST00000594973 UNC79Q9P2D8 2635 aa12.8□□□□□ -0.36
SHKBP1-205ENST00000594973 ACANP16112 2415 aa12.8□□□□□ -0.36
SHKBP1-205ENST00000594973 TMEM89A2RUT3 159 aa12.8□□□□□ -0.36
SHKBP1-205ENST00000594973 CD7P09564 240 aa12.79□□□□□ -0.36
SHKBP1-205ENST00000594973 GATA1P15976 413 aaPredicted RBP12.79□□□□□ -0.36
SHKBP1-205ENST00000594973 ANKRD29Q8N6D5 301 aa12.79□□□□□ -0.36
SHKBP1-205ENST00000594973 K7EMT4 169 aa12.79□□□□□ -0.36
SHKBP1-205ENST00000594973 TCL1BO95988 128 aa12.79□□□□□ -0.36
SHKBP1-205ENST00000594973 SYNJ2BPP57105 145 aa12.79□□□□□ -0.36
SHKBP1-205ENST00000594973 GCN1Q92616 2671 aaKnown RBP12.78□□□□□ -0.36
SHKBP1-205ENST00000594973 OVOL1O14753 267 aa12.78□□□□□ -0.36
SHKBP1-205ENST00000594973 IGHV4OR15-8A0A075B7B6 117 aa12.78□□□□□ -0.36
SHKBP1-205ENST00000594973 A0A087WW49 117 aa12.78□□□□□ -0.36
SHKBP1-205ENST00000594973 SNCGO76070 127 aa12.78□□□□□ -0.36
SHKBP1-205ENST00000594973 LINC00477Q96M19 166 aa12.78□□□□□ -0.36
SHKBP1-205ENST00000594973 ELANEP08246 267 aa12.77□□□□□ -0.36
SHKBP1-205ENST00000594973 IFITM1P13164 125 aa12.77□□□□□ -0.36
SHKBP1-205ENST00000594973 SRSF9Q13242 221 aaKnown RBP eCLIP12.77□□□□□ -0.36
SHKBP1-205ENST00000594973 TTC32Q5I0X7 151 aa12.77□□□□□ -0.36
SHKBP1-205ENST00000594973 NDUFA11Q86Y39 141 aa12.77□□□□□ -0.36
SHKBP1-205ENST00000594973 NRACQ8N912 160 aa12.77□□□□□ -0.36
SHKBP1-205ENST00000594973 SCGB1C2P0DMR2 95 aa12.77□□□□□ -0.37
SHKBP1-205ENST00000594973 SMIM20Q8N5G0 67 aa12.77□□□□□ -0.37
SHKBP1-205ENST00000594973 KIR2DL4Q99706 377 aa12.76□□□□□ -0.37
SHKBP1-205ENST00000594973 TNFRSF18Q9Y5U5 241 aa12.76□□□□□ -0.37
SHKBP1-205ENST00000594973 ZNF815PA8K554 130 aa12.76□□□□□ -0.37
SHKBP1-205ENST00000594973 C18orf65Q6ZTR6 163 aa12.76□□□□□ -0.37
SHKBP1-205ENST00000594973 ZFAND2AQ8N6M9 145 aa12.76□□□□□ -0.37
SHKBP1-205ENST00000594973 UBE2E2Q96LR5 201 aa12.76□□□□□ -0.37
SHKBP1-205ENST00000594973 PRADC1Q9BSG0 188 aa12.76□□□□□ -0.37
SHKBP1-205ENST00000594973 CCDC179H3BU77 68 aa12.75□□□□□ -0.37
SHKBP1-205ENST00000594973 HOXD3P31249 432 aaPredicted RBP12.75□□□□□ -0.37
SHKBP1-205ENST00000594973 DEFB136Q30KP8 78 aa12.75□□□□□ -0.37
SHKBP1-205ENST00000594973 SCGB1D4Q6XE38 83 aa12.75□□□□□ -0.37
SHKBP1-205ENST00000594973 NEXN-AS1Q8NBZ9 246 aa12.75□□□□□ -0.37
SHKBP1-205ENST00000594973 DCANP1Q8TF63 244 aa12.75□□□□□ -0.37
SHKBP1-205ENST00000594973 SETD2Q9BYW2 2564 aaPredicted RBP12.75□□□□□ -0.37
SHKBP1-205ENST00000594973 HIST2H2BDQ6DRA6 164 aa12.74□□□□□ -0.37
SHKBP1-205ENST00000594973 LENEPQ9Y5L5 61 aa12.74□□□□□ -0.37
SHKBP1-205ENST00000594973 MTORP42345 2549 aa12.74□□□□□ -0.37
SHKBP1-205ENST00000594973 RNASE4P34096 147 aaKnown RBP12.74□□□□□ -0.37
SHKBP1-205ENST00000594973 H3BVH4 76 aa12.73□□□□□ -0.37
SHKBP1-205ENST00000594973 HECTD1Q9ULT8 2610 aa12.73□□□□□ -0.37
SHKBP1-205ENST00000594973 ID1P41134 155 aa12.73□□□□□ -0.37
SHKBP1-205ENST00000594973 ORMDL2Q53FV1 153 aa12.73□□□□□ -0.37
SHKBP1-205ENST00000594973 SFTA2Q6UW10 78 aa12.73□□□□□ -0.37
SHKBP1-205ENST00000594973 TOMM6Q96B49 74 aa12.73□□□□□ -0.37
SHKBP1-205ENST00000594973 KHDC1LQ5JSQ8 128 aa12.72□□□□□ -0.37
SHKBP1-205ENST00000594973 C10orf126Q8N4M7 172 aa12.72□□□□□ -0.37
SHKBP1-205ENST00000594973 SCGB3A1Q96QR1 104 aa12.72□□□□□ -0.37
SHKBP1-205ENST00000594973 SLC25A20O43772 301 aa12.72□□□□□ -0.37
SHKBP1-205ENST00000594973 LINC01600Q96MT4 127 aa12.72□□□□□ -0.37
SHKBP1-205ENST00000594973 FASNP49327 2511 aaKnown RBP12.72□□□□□ -0.37
SHKBP1-205ENST00000594973 TRAV4A0A0B4J268 109 aa12.71□□□□□ -0.37
SHKBP1-205ENST00000594973 TRAV21A0A0B4J279 112 aa12.71□□□□□ -0.37
SHKBP1-205ENST00000594973 SPRY2O43597 315 aa12.71□□□□□ -0.37
SHKBP1-205ENST00000594973 Q8N2B8 174 aa12.71□□□□□ -0.37
SHKBP1-205ENST00000594973 PLEKHB2Q96CS7 222 aa12.71□□□□□ -0.37
SHKBP1-205ENST00000594973 SLURP1P55000 103 aa12.71□□□□□ -0.38
SHKBP1-205ENST00000594973 SPANXN1Q5VSR9 72 aa12.71□□□□□ -0.38
SHKBP1-205ENST00000594973 RNF152Q8N8N0 203 aa12.71□□□□□ -0.38
SHKBP1-205ENST00000594973 DUX3Q96PT4 197 aa12.71□□□□□ -0.38
SHKBP1-205ENST00000594973 SMIM2Q9BVW6 85 aa12.71□□□□□ -0.38
SHKBP1-205ENST00000594973 FAM19A4Q96LR4 140 aa12.7□□□□□ -0.38
SHKBP1-205ENST00000594973 SORL1Q92673 2214 aa12.69□□□□□ -0.38
SHKBP1-205ENST00000594973 IGHV4-4A0A075B6R2 117 aa12.69□□□□□ -0.38
SHKBP1-205ENST00000594973 DNAJC9-AS1A6NH13 148 aa12.69□□□□□ -0.38
SHKBP1-205ENST00000594973 LGALS9O00182 355 aa12.69□□□□□ -0.38
SHKBP1-205ENST00000594973 IGKV3-20P01619 116 aa12.69□□□□□ -0.38
SHKBP1-205ENST00000594973 CFC1BP0CG36 223 aa12.69□□□□□ -0.38
SHKBP1-205ENST00000594973 CFC1P0CG37 223 aa12.69□□□□□ -0.38
SHKBP1-205ENST00000594973 ANXA2RQ3ZCQ2 193 aa12.69□□□□□ -0.38
SHKBP1-205ENST00000594973 PRO1854Q9UHT4 67 aa12.69□□□□□ -0.38
SHKBP1-205ENST00000594973 A0A0J9YY99 117 aa12.68□□□□□ -0.38
SHKBP1-205ENST00000594973 S100A4P26447 101 aaKnown RBP12.68□□□□□ -0.38
SHKBP1-205ENST00000594973 SNRPD3P62318 126 aaKnown RBP12.68□□□□□ -0.38
SHKBP1-205ENST00000594973 NOTCH2Q04721 2471 aa12.68□□□□□ -0.38
SHKBP1-205ENST00000594973 CRLF1O75462 422 aa12.67□□□□□ -0.38
SHKBP1-205ENST00000594973 MRPL23Q16540 153 aaKnown RBP12.67□□□□□ -0.38
SHKBP1-205ENST00000594973 RASL10AQ92737 203 aa12.67□□□□□ -0.38
SHKBP1-205ENST00000594973 M0R381 172 aa12.67□□□□□ -0.38
SHKBP1-205ENST00000594973 GNRH2O43555 120 aa12.67□□□□□ -0.38
SHKBP1-205ENST00000594973 IGHV3-30P01768 117 aa12.67□□□□□ -0.38
SHKBP1-205ENST00000594973 IGHV3-30-5P0DP03 117 aa12.67□□□□□ -0.38
SHKBP1-205ENST00000594973 PAPPA-AS1Q5QFB9 102 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 67.7 ms