RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 FAM236BA0A1B0GV22 79 aa7.47□□□□□ -1.21
LIG3-216ENST00000593099 PRAC2D3DTV9 90 aa7.47□□□□□ -1.21
LIG3-216ENST00000593099 GNRH2O43555 120 aa7.47□□□□□ -1.21
LIG3-216ENST00000593099 ATP5G1P05496 136 aa7.47□□□□□ -1.21
LIG3-216ENST00000593099 C9orf47Q6ZRZ4 202 aa7.47□□□□□ -1.21
LIG3-216ENST00000593099 H3BMG7 143 aa7.47□□□□□ -1.21
LIG3-216ENST00000593099 EGR2P11161 476 aaPredicted RBP7.47□□□□□ -1.21
LIG3-216ENST00000593099 HLA-DRB4P13762 266 aa7.47□□□□□ -1.21
LIG3-216ENST00000593099 LAGE3Q14657 143 aa7.47□□□□□ -1.21
LIG3-216ENST00000593099 HIST2H2BDQ6DRA6 164 aa7.47□□□□□ -1.21
LIG3-216ENST00000593099 HLA-DRB4X5D2U9 266 aa7.47□□□□□ -1.21
LIG3-216ENST00000593099 C2CD3Q4AC94 2353 aa7.47□□□□□ -1.21
LIG3-216ENST00000593099 K7EN84 100 aa7.46□□□□□ -1.21
LIG3-216ENST00000593099 PLNP26678 52 aa7.46□□□□□ -1.21
LIG3-216ENST00000593099 C9JQL5 133 aa7.46□□□□□ -1.21
LIG3-216ENST00000593099 RHOHQ15669 191 aa7.46□□□□□ -1.21
LIG3-216ENST00000593099 Q6ZVH6 145 aa7.46□□□□□ -1.21
LIG3-216ENST00000593099 ZNRF2Q8NHG8 242 aa7.46□□□□□ -1.21
LIG3-216ENST00000593099 ZFAND3Q9H8U3 227 aa7.46□□□□□ -1.22
LIG3-216ENST00000593099 C18orf65Q6ZTR6 163 aa7.46□□□□□ -1.22
LIG3-216ENST00000593099 IL17DQ8TAD2 202 aa7.45□□□□□ -1.22
LIG3-216ENST00000593099 DEFB1P60022 68 aa7.45□□□□□ -1.22
LIG3-216ENST00000593099 ZNF580Q9UK33 172 aa7.45□□□□□ -1.22
LIG3-216ENST00000593099 TRBV25-1A0A075B6N4 114 aa7.45□□□□□ -1.22
LIG3-216ENST00000593099 TRAV8-3A0A0A6YYJ7 113 aa7.45□□□□□ -1.22
LIG3-216ENST00000593099 CRIP2P52943 208 aaPredicted RBP7.45□□□□□ -1.22
LIG3-216ENST00000593099 CHCHD1Q96BP2 118 aaKnown RBP7.45□□□□□ -1.22
LIG3-216ENST00000593099 SMKR1H3BMG3 65 aa7.45□□□□□ -1.22
LIG3-216ENST00000593099 HRCT1Q6UXD1 115 aa7.45□□□□□ -1.22
LIG3-216ENST00000593099 DEFB104AQ8WTQ1 72 aa7.45□□□□□ -1.22
LIG3-216ENST00000593099 DNAJC30Q96LL9 226 aa7.45□□□□□ -1.22
LIG3-216ENST00000593099 A0A1B0GX51 115 aa7.44□□□□□ -1.22
LIG3-216ENST00000593099 CXCL5P42830 114 aa7.44□□□□□ -1.22
LIG3-216ENST00000593099 FAM104BQ5XKR9 115 aa7.44□□□□□ -1.22
LIG3-216ENST00000593099 A0A0J9YY99 117 aa7.44□□□□□ -1.22
LIG3-216ENST00000593099 SH2D6Q7Z4S9 175 aa7.44□□□□□ -1.22
LIG3-216ENST00000593099 SPRY2O43597 315 aa7.44□□□□□ -1.22
LIG3-216ENST00000593099 IGKCP01834 107 aa7.44□□□□□ -1.22
LIG3-216ENST00000593099 USP24Q9UPU5 2620 aa7.44□□□□□ -1.22
LIG3-216ENST00000593099 BVES-AS1Q5T3Y7 98 aa7.43□□□□□ -1.22
LIG3-216ENST00000593099 IGKV3D-20A0A0C4DH25 116 aa7.43□□□□□ -1.22
LIG3-216ENST00000593099 NDUFV3P56181 108 aaKnown RBP7.43□□□□□ -1.22
LIG3-216ENST00000593099 LINC01559Q495D7 138 aa7.43□□□□□ -1.22
LIG3-216ENST00000593099 V9GYV3 84 aa7.43□□□□□ -1.22
LIG3-216ENST00000593099 SDHAF1A6NFY7 115 aa7.43□□□□□ -1.22
LIG3-216ENST00000593099 TEX43Q6ZNM6 134 aa7.43□□□□□ -1.22
LIG3-216ENST00000593099 IFI27L1Q96BM0 104 aa7.43□□□□□ -1.22
LIG3-216ENST00000593099 KLK5Q9Y337 293 aaPredicted RBP7.42□□□□□ -1.22
LIG3-216ENST00000593099 I3L3M4 83 aa7.42□□□□□ -1.22
LIG3-216ENST00000593099 SS18Q15532 418 aa7.42□□□□□ -1.22
LIG3-216ENST00000593099 A0A096LPF7 62 aa7.42□□□□□ -1.22
LIG3-216ENST00000593099 SYS1-DBNDD2H3BUS1 97 aa7.42□□□□□ -1.22
LIG3-216ENST00000593099 ESM1Q9NQ30 184 aa7.42□□□□□ -1.22
LIG3-216ENST00000593099 HCFC1P51610 2035 aa7.42□□□□□ -1.22
LIG3-216ENST00000593099 NDUFC2-KCTD14E9PQ53 114 aa7.42□□□□□ -1.22
LIG3-216ENST00000593099 UQCRQO14949 82 aa7.42□□□□□ -1.22
LIG3-216ENST00000593099 SLC25A20O43772 301 aa7.42□□□□□ -1.22
LIG3-216ENST00000593099 HERVK_113P63121 156 aa7.42□□□□□ -1.22
LIG3-216ENST00000593099 AMTNQ6UX39 209 aa7.42□□□□□ -1.22
LIG3-216ENST00000593099 KIR2DL5BA0A0G2JN68 375 aa7.41□□□□□ -1.22
LIG3-216ENST00000593099 KIR2DL5BA0A0G2JPC4 375 aa7.41□□□□□ -1.22
LIG3-216ENST00000593099 TAX1BP3O14907 124 aa7.41□□□□□ -1.22
LIG3-216ENST00000593099 DEFB4AO15263 64 aa7.41□□□□□ -1.22
LIG3-216ENST00000593099 CCL18P55774 89 aa7.41□□□□□ -1.22
LIG3-216ENST00000593099 KIR2DL5AQ8N109 375 aa7.41□□□□□ -1.22
LIG3-216ENST00000593099 Q8N1Y9 231 aa7.41□□□□□ -1.22
LIG3-216ENST00000593099 BAALCQ8WXS3 180 aa7.41□□□□□ -1.22
LIG3-216ENST00000593099 RMI2Q96E14 147 aa7.41□□□□□ -1.22
LIG3-216ENST00000593099 LINC00482Q8N8I6 264 aa7.41□□□□□ -1.22
LIG3-216ENST00000593099 NTN5Q8WTR8 489 aaPredicted RBP7.41□□□□□ -1.22
LIG3-216ENST00000593099 UBL5Q9BZL1 73 aa7.41□□□□□ -1.22
LIG3-216ENST00000593099 BRI3O95415 125 aa7.4□□□□□ -1.22
LIG3-216ENST00000593099 ADCYAP1P18509 176 aa7.4□□□□□ -1.22
LIG3-216ENST00000593099 TMEM263Q8WUH6 116 aaKnown RBP7.4□□□□□ -1.22
LIG3-216ENST00000593099 ODF3Q96PU9 254 aa7.4□□□□□ -1.22
LIG3-216ENST00000593099 ICOSQ9Y6W8 199 aa7.4□□□□□ -1.22
LIG3-216ENST00000593099 IGHV3-38A0A0C4DH36 116 aa7.4□□□□□ -1.22
LIG3-216ENST00000593099 SOCS3O14543 225 aa7.4□□□□□ -1.22
LIG3-216ENST00000593099 MPLKIPQ8TAP9 179 aa7.4□□□□□ -1.22
LIG3-216ENST00000593099 SMIM27A0A1W2PRY6 76 aa7.4□□□□□ -1.22
LIG3-216ENST00000593099 PROK1P58294 105 aa7.4□□□□□ -1.22
LIG3-216ENST00000593099 MRPL51Q4U2R6 128 aaKnown RBP7.4□□□□□ -1.23
LIG3-216ENST00000593099 A0A0U1RRA0 63 aa7.39□□□□□ -1.23
LIG3-216ENST00000593099 ACYP1P07311 99 aa7.39□□□□□ -1.23
LIG3-216ENST00000593099 CDPF1Q6NVV7 123 aa7.39□□□□□ -1.23
LIG3-216ENST00000593099 PLA2G2EQ9NZK7 142 aa7.39□□□□□ -1.23
LIG3-216ENST00000593099 GATD1Q8NB37 220 aa7.39□□□□□ -1.23
LIG3-216ENST00000593099 ZNF503Q96F45 646 aa7.39□□□□□ -1.23
LIG3-216ENST00000593099 SIGLEC8Q9NYZ4 499 aa7.39□□□□□ -1.23
LIG3-216ENST00000593099 GYPEP15421 78 aa7.39□□□□□ -1.23
LIG3-216ENST00000593099 C11orf45Q8TAV5 145 aa7.39□□□□□ -1.23
LIG3-216ENST00000593099 ZNF625Q96I27 306 aaPredicted RBP7.39□□□□□ -1.23
LIG3-216ENST00000593099 ZNF747Q9BV97 191 aa7.39□□□□□ -1.23
LIG3-216ENST00000593099 TRBV6-1A0A0K0K1D8 114 aa7.39□□□□□ -1.23
LIG3-216ENST00000593099 SERTAD4-AS1Q5TG53 156 aa7.38□□□□□ -1.23
LIG3-216ENST00000593099 OVOL2Q9BRP0 275 aa7.38□□□□□ -1.23
LIG3-216ENST00000593099 TRAV26-2A0A0B4J265 109 aa7.38□□□□□ -1.23
LIG3-216ENST00000593099 CSDC2Q9Y534 153 aaKnown RBP7.38□□□□□ -1.23
LIG3-216ENST00000593099 IGHV1-24A0A0C4DH33 117 aa7.38□□□□□ -1.23
LIG3-216ENST00000593099 RS1O15537 224 aa7.37□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms