RNA–Protein interactions for RNA: ENST00000589867.2

MBD1-221, Transcript of methyl-CpG binding domain protein 1, human

TSL 3

Gene MBD1, Length 673 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MBD1-221	ENST00000589867	NIT1	Q86X76	327 aa		11.59	□□□□□ -0.55
MBD1-221	ENST00000589867		A0A087WWC5	75 aa		11.58	□□□□□ -0.56
MBD1-221	ENST00000589867	FUS	P35637	526 aa	Known RBP eCLIP	11.58	□□□□□ -0.56
MBD1-221	ENST00000589867	SUMO4	Q6EEV6	95 aa		11.58	□□□□□ -0.56
MBD1-221	ENST00000589867	NTM-AS1	Q6ZSK4	140 aa		11.58	□□□□□ -0.56
MBD1-221	ENST00000589867	DAZ4	Q86SG3	579 aa	Known RBP	11.58	□□□□□ -0.56
MBD1-221	ENST00000589867	DAZ3	Q9NR90	486 aa	Known RBP	11.58	□□□□□ -0.56
MBD1-221	ENST00000589867		A0A087WTM6	91 aa		11.57	□□□□□ -0.56
MBD1-221	ENST00000589867	ZNF727	A8MUV8	499 aa		11.57	□□□□□ -0.56
MBD1-221	ENST00000589867		F5H697	171 aa		11.57	□□□□□ -0.56
MBD1-221	ENST00000589867	GATC	O43716	136 aa	Known RBP	11.57	□□□□□ -0.56
MBD1-221	ENST00000589867	KRTAP17-1	Q9BYP8	105 aa		11.57	□□□□□ -0.56
MBD1-221	ENST00000589867	C16orf90	A8MZG2	172 aa		11.56	□□□□□ -0.56
MBD1-221	ENST00000589867	MGP	P08493	103 aa		11.56	□□□□□ -0.56
MBD1-221	ENST00000589867	SMIM17	P0DL12	118 aa		11.56	□□□□□ -0.56
MBD1-221	ENST00000589867	FOXA3	P55318	350 aa	Predicted RBP	11.56	□□□□□ -0.56
MBD1-221	ENST00000589867	DNAJC30	Q96LL9	226 aa		11.56	□□□□□ -0.56
MBD1-221	ENST00000589867	DNAH8	Q96JB1	4490 aa		11.55	□□□□□ -0.56
MBD1-221	ENST00000589867	TRBV6-8	A0A0A6YYG3	113 aa		11.55	□□□□□ -0.56
MBD1-221	ENST00000589867	LRCOL1	A6NCL2	159 aa		11.55	□□□□□ -0.56
MBD1-221	ENST00000589867	CT83	Q5H943	113 aa		11.55	□□□□□ -0.56
MBD1-221	ENST00000589867	TRGC1	P0CF51	173 aa		11.54	□□□□□ -0.56
MBD1-221	ENST00000589867	ERVFC1-1	P60608	527 aa		11.54	□□□□□ -0.56
MBD1-221	ENST00000589867	LAGE3	Q14657	143 aa		11.54	□□□□□ -0.56
MBD1-221	ENST00000589867	DPH3P1	Q9H4G8	78 aa		11.54	□□□□□ -0.56
MBD1-221	ENST00000589867		Q9HAA7	133 aa		11.54	□□□□□ -0.56
MBD1-221	ENST00000589867	OSTC	Q9NRP0	149 aa		11.54	□□□□□ -0.56
MBD1-221	ENST00000589867		A8MWL6	223 aa		11.53	□□□□□ -0.56
MBD1-221	ENST00000589867	RPL23	P62829	140 aa	Known RBP	11.53	□□□□□ -0.56
MBD1-221	ENST00000589867	TWIST1	Q15672	202 aa		11.53	□□□□□ -0.56
MBD1-221	ENST00000589867	ISOC2	Q96AB3	205 aa		11.53	□□□□□ -0.56
MBD1-221	ENST00000589867	PGLYRP4	Q96LB8	373 aa		11.53	□□□□□ -0.56
MBD1-221	ENST00000589867		V9GYV3	84 aa		11.53	□□□□□ -0.56
MBD1-221	ENST00000589867	MAPKAPK5-AS1	Q8N8E1	139 aa		11.52	□□□□□ -0.57
MBD1-221	ENST00000589867	WFDC2	Q14508	124 aa		11.51	□□□□□ -0.57
MBD1-221	ENST00000589867	TMEM241	Q24JQ0	296 aa		11.51	□□□□□ -0.57
MBD1-221	ENST00000589867	RASL11A	Q6T310	242 aa		11.51	□□□□□ -0.57
MBD1-221	ENST00000589867	GATD1	Q8NB37	220 aa		11.51	□□□□□ -0.57
MBD1-221	ENST00000589867	TSKU	Q8WUA8	353 aa		11.51	□□□□□ -0.57
MBD1-221	ENST00000589867	TRAV26-2	A0A0B4J265	109 aa		11.5	□□□□□ -0.57
MBD1-221	ENST00000589867	PEA15	Q15121	130 aa		11.5	□□□□□ -0.57
MBD1-221	ENST00000589867	FAM74A3	Q4VXF1	159 aa		11.5	□□□□□ -0.57
MBD1-221	ENST00000589867	KLK12	Q9UKR0	248 aa		11.5	□□□□□ -0.57
MBD1-221	ENST00000589867	HIGD1C	A8MV81	97 aa		11.49	□□□□□ -0.57
MBD1-221	ENST00000589867	MPV17L2	Q567V2	206 aa		11.49	□□□□□ -0.57
MBD1-221	ENST00000589867	CHCHD7	Q9BUK0	85 aa		11.49	□□□□□ -0.57
MBD1-221	ENST00000589867	GFRA4	Q9GZZ7	299 aa		11.49	□□□□□ -0.57
MBD1-221	ENST00000589867	SMDT1	Q9H4I9	107 aa		11.49	□□□□□ -0.57
MBD1-221	ENST00000589867	NIT2	Q9NQR4	276 aa		11.49	□□□□□ -0.57
MBD1-221	ENST00000589867		H7C1H1	209 aa		11.48	□□□□□ -0.57
MBD1-221	ENST00000589867	GAS8-AS1	O95177	125 aa		11.48	□□□□□ -0.57
MBD1-221	ENST00000589867	NAT8	Q9UHE5	227 aa		11.48	□□□□□ -0.57
MBD1-221	ENST00000589867	TRAV8-3	A0A0A6YYJ7	113 aa		11.47	□□□□□ -0.57
MBD1-221	ENST00000589867	FAM231B	A6NCW3	169 aa		11.47	□□□□□ -0.57
MBD1-221	ENST00000589867	IQCJ	Q1A5X6	159 aa		11.47	□□□□□ -0.57
MBD1-221	ENST00000589867	DEFB104A	Q8WTQ1	72 aa		11.47	□□□□□ -0.57
MBD1-221	ENST00000589867	RPL39L	Q96EH5	51 aa	Known RBP	11.47	□□□□□ -0.57
MBD1-221	ENST00000589867	PGPEP1	Q9NXJ5	209 aa		11.47	□□□□□ -0.57
MBD1-221	ENST00000589867	IFITM2	Q01629	132 aa		11.46	□□□□□ -0.57
MBD1-221	ENST00000589867	ADIRF	Q15847	76 aa		11.46	□□□□□ -0.57
MBD1-221	ENST00000589867	ATRAID	Q6UW56	229 aa		11.46	□□□□□ -0.57
MBD1-221	ENST00000589867	ENHO	Q6UWT2	76 aa		11.46	□□□□□ -0.57
MBD1-221	ENST00000589867		Q8N976	141 aa		11.46	□□□□□ -0.57
MBD1-221	ENST00000589867	NUP35	Q8NFH5	326 aa		11.46	□□□□□ -0.57
MBD1-221	ENST00000589867	RNF185	Q96GF1	192 aa		11.46	□□□□□ -0.57
MBD1-221	ENST00000589867		A0A087WX48	190 aa		11.45	□□□□□ -0.58
MBD1-221	ENST00000589867		A0A1B0GUT8	65 aa		11.45	□□□□□ -0.58
MBD1-221	ENST00000589867	CDK2AP2	O75956	126 aa		11.45	□□□□□ -0.58
MBD1-221	ENST00000589867	TMEM97	Q5BJF2	176 aa		11.45	□□□□□ -0.58
MBD1-221	ENST00000589867	CHCHD5	Q9BSY4	110 aa		11.45	□□□□□ -0.58
MBD1-221	ENST00000589867	URGCP-MRPS24	S4R325	110 aa		11.45	□□□□□ -0.58
MBD1-221	ENST00000589867	TMEM262	E9PQX1	116 aa		11.44	□□□□□ -0.58
MBD1-221	ENST00000589867	EREG	O14944	169 aa		11.44	□□□□□ -0.58
MBD1-221	ENST00000589867	PSCA	O43653	123 aa		11.44	□□□□□ -0.58
MBD1-221	ENST00000589867	KRTAP10-1	P60331	282 aa		11.44	□□□□□ -0.58
MBD1-221	ENST00000589867	GAGE6	Q13070	117 aa		11.44	□□□□□ -0.58
MBD1-221	ENST00000589867		Q8N814	137 aa		11.44	□□□□□ -0.58
MBD1-221	ENST00000589867	C15orf54	Q8N8G6	183 aa		11.44	□□□□□ -0.58
MBD1-221	ENST00000589867	UBE2W	Q96B02	151 aa		11.44	□□□□□ -0.58
MBD1-221	ENST00000589867	TM2D2	Q9BX73	214 aa		11.44	□□□□□ -0.58
MBD1-221	ENST00000589867	KRTAP4-5	Q9BYR2	181 aa		11.44	□□□□□ -0.58
MBD1-221	ENST00000589867	FAT1	Q14517	4588 aa		11.43	□□□□□ -0.58
MBD1-221	ENST00000589867	TRBV25-1	A0A075B6N4	114 aa		11.43	□□□□□ -0.58
MBD1-221	ENST00000589867	IGHV1-24	A0A0C4DH33	117 aa		11.43	□□□□□ -0.58
MBD1-221	ENST00000589867	SMIM27	A0A1W2PRY6	76 aa		11.43	□□□□□ -0.58
MBD1-221	ENST00000589867	RBX1	P62877	108 aa		11.43	□□□□□ -0.58
MBD1-221	ENST00000589867	CDPF1	Q6NVV7	123 aa		11.43	□□□□□ -0.58
MBD1-221	ENST00000589867	FRZB	Q92765	325 aa		11.43	□□□□□ -0.58
MBD1-221	ENST00000589867	TMEM191A	Q9H0A3	160 aa		11.43	□□□□□ -0.58
MBD1-221	ENST00000589867	SREK1IP1	Q8N9Q2	155 aa	Predicted RBP	11.42	□□□□□ -0.58
MBD1-221	ENST00000589867	PRR34	Q9NV39	138 aa		11.42	□□□□□ -0.58
MBD1-221	ENST00000589867	ABCA13	Q86UQ4	5058 aa		11.41	□□□□□ -0.58
MBD1-221	ENST00000589867	LECT2	O14960	151 aa		11.41	□□□□□ -0.58
MBD1-221	ENST00000589867	RAB4A	P20338	218 aa		11.41	□□□□□ -0.58
MBD1-221	ENST00000589867	RPS10	P46783	165 aa	Known RBP	11.41	□□□□□ -0.58
MBD1-221	ENST00000589867	ELOB	Q15370	118 aa		11.41	□□□□□ -0.58
MBD1-221	ENST00000589867	KRTAP26-1	Q6PEX3	210 aa		11.41	□□□□□ -0.58
MBD1-221	ENST00000589867	AMN1	Q8IY45	258 aa		11.41	□□□□□ -0.58
MBD1-221	ENST00000589867	C20orf203	Q8NBC4	194 aa		11.41	□□□□□ -0.58
MBD1-221	ENST00000589867	BAALC	Q8WXS3	180 aa		11.41	□□□□□ -0.58

Retrieved 100 of 20,778 RNA–protein pairs in 118.7 ms