RNA–Protein interactions for RNA: ENST00000588323.1

VPS4B-203, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 3

Gene VPS4B, Length 463 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-203ENST00000588323 LGALSLQ3ZCW2 172 aaPredicted RBP1.7□□□□□ -2.14
VPS4B-203ENST00000588323 KHDC3LQ587J8 217 aa1.7□□□□□ -2.14
VPS4B-203ENST00000588323 Q5BKY6 102 aa1.7□□□□□ -2.14
VPS4B-203ENST00000588323 ZNF660Q6AZW8 331 aaPredicted RBP1.7□□□□□ -2.14
VPS4B-203ENST00000588323 TMEM14EPQ6UXP3 125 aa1.7□□□□□ -2.14
VPS4B-203ENST00000588323 FOXI2Q6ZQN5 318 aa1.7□□□□□ -2.14
VPS4B-203ENST00000588323 SCXQ7RTU7 201 aa1.7□□□□□ -2.14
VPS4B-203ENST00000588323 ARPINQ7Z6K5 226 aa1.7□□□□□ -2.14
VPS4B-203ENST00000588323 BPIFA4PQ86YQ2 179 aa1.7□□□□□ -2.14
VPS4B-203ENST00000588323 PRR15Q8IV56 129 aa1.7□□□□□ -2.14
VPS4B-203ENST00000588323 MSRB3Q8IXL7 192 aa1.7□□□□□ -2.14
VPS4B-203ENST00000588323 ATOH7Q8N100 152 aa1.7□□□□□ -2.14
VPS4B-203ENST00000588323 OR8D4Q8NGM9 314 aa1.7□□□□□ -2.14
VPS4B-203ENST00000588323 OR5C1Q8NGR4 320 aa1.7□□□□□ -2.14
VPS4B-203ENST00000588323 OR5AK2Q8NH90 309 aa1.7□□□□□ -2.14
VPS4B-203ENST00000588323 MRPL30Q8TCC3 161 aaKnown RBP1.7□□□□□ -2.14
VPS4B-203ENST00000588323 C10orf82Q8WW14 230 aa1.7□□□□□ -2.14
VPS4B-203ENST00000588323 MCEEQ96PE7 176 aa1.7□□□□□ -2.14
VPS4B-203ENST00000588323 AQP10Q96PS8 301 aa1.7□□□□□ -2.14
VPS4B-203ENST00000588323 SDF2Q99470 211 aa1.7□□□□□ -2.14
VPS4B-203ENST00000588323 MRPL32Q9BYC8 188 aaKnown RBP1.7□□□□□ -2.14
VPS4B-203ENST00000588323 REG4Q9BYZ8 158 aa1.7□□□□□ -2.14
VPS4B-203ENST00000588323 TMEM133Q9H2Q1 129 aa1.7□□□□□ -2.14
VPS4B-203ENST00000588323 SLC39A9Q9NUM3 307 aa1.7□□□□□ -2.14
VPS4B-203ENST00000588323 ZNF443Q9Y2A4 671 aaPredicted RBP1.7□□□□□ -2.14
VPS4B-203ENST00000588323 MPC1Q9Y5U8 109 aa1.7□□□□□ -2.14
VPS4B-203ENST00000588323 TENM1Q9UKZ4 2725 aa1.7□□□□□ -2.14
VPS4B-203ENST00000588323 CMYA5Q8N3K9 4069 aa1.69□□□□□ -2.14
VPS4B-203ENST00000588323 TENM3Q9P273 2699 aa1.69□□□□□ -2.14
VPS4B-203ENST00000588323 HERC2O95714 4834 aa1.69□□□□□ -2.14
VPS4B-203ENST00000588323 IGLV2-18A0A075B6J9 118 aa1.69□□□□□ -2.14
VPS4B-203ENST00000588323 TRBV20-1A0A075B6N2 111 aa1.69□□□□□ -2.14
VPS4B-203ENST00000588323 TRAV16A0A0A6YYK6 109 aaPredicted RBP1.69□□□□□ -2.14
VPS4B-203ENST00000588323 C3orf85A0A1B0GTC6 90 aa1.69□□□□□ -2.14
VPS4B-203ENST00000588323 ARRDC5A6NEK1 342 aa1.69□□□□□ -2.14
VPS4B-203ENST00000588323 OR51F1A6NGY5 319 aa1.69□□□□□ -2.14
VPS4B-203ENST00000588323 F8W1H4 67 aa1.69□□□□□ -2.14
VPS4B-203ENST00000588323 UQCRQO14949 82 aa1.69□□□□□ -2.14
VPS4B-203ENST00000588323 RBP4P02753 201 aa1.69□□□□□ -2.14
VPS4B-203ENST00000588323 TCRAP04437 139 aa1.69□□□□□ -2.14
VPS4B-203ENST00000588323 SRP19P09132 144 aaKnown RBP1.69□□□□□ -2.14
VPS4B-203ENST00000588323 CXCL1P09341 107 aa1.69□□□□□ -2.14
VPS4B-203ENST00000588323 HIST1H2BOP23527 126 aa1.69□□□□□ -2.14
VPS4B-203ENST00000588323 NPPCP23582 126 aa1.69□□□□□ -2.14
VPS4B-203ENST00000588323 PSMB8P28062 276 aa1.69□□□□□ -2.14
VPS4B-203ENST00000588323 HIST1H2BBP33778 126 aa1.69□□□□□ -2.14
VPS4B-203ENST00000588323 CSN1S1P47710 185 aa1.69□□□□□ -2.14
VPS4B-203ENST00000588323 HIST1H2BDP58876 126 aa1.69□□□□□ -2.14
VPS4B-203ENST00000588323 TSPEAR-AS2P59090 65 aa1.69□□□□□ -2.14
VPS4B-203ENST00000588323 GNG11P61952 73 aa1.69□□□□□ -2.14
VPS4B-203ENST00000588323 HIST1H2BCP62807 126 aa1.69□□□□□ -2.14
VPS4B-203ENST00000588323 RPL30P62888 115 aaKnown RBP1.69□□□□□ -2.14
VPS4B-203ENST00000588323 HBBP68871 147 aa1.69□□□□□ -2.14
VPS4B-203ENST00000588323 BTG2P78543 158 aa1.69□□□□□ -2.14
VPS4B-203ENST00000588323 HIST2H2BEQ16778 126 aa1.69□□□□□ -2.14
VPS4B-203ENST00000588323 HIST2H2BFQ5QNW6 126 aaPredicted RBP1.69□□□□□ -2.14
VPS4B-203ENST00000588323 LINC01545Q5VT33 79 aa1.69□□□□□ -2.14
VPS4B-203ENST00000588323 AMTNQ6UX39 209 aa1.69□□□□□ -2.14
VPS4B-203ENST00000588323 TMEM136Q6ZRR5 245 aa1.69□□□□□ -2.14
VPS4B-203ENST00000588323 LCA10Q71F78 164 aa1.69□□□□□ -2.14
VPS4B-203ENST00000588323 HMGN2P46Q86SG4 172 aa1.69□□□□□ -2.14
VPS4B-203ENST00000588323 KTN1-AS1Q86SY8 53 aa1.69□□□□□ -2.14
VPS4B-203ENST00000588323 RPS19BP1Q86WX3 136 aaKnown RBP1.69□□□□□ -2.14
VPS4B-203ENST00000588323 HIST3H2BBQ8N257 126 aa1.69□□□□□ -2.14
VPS4B-203ENST00000588323 OR10P1Q8NGE3 313 aa1.69□□□□□ -2.14
VPS4B-203ENST00000588323 OR10AC1Q8NH08 325 aa1.69□□□□□ -2.14
VPS4B-203ENST00000588323 HIST1H2BHQ93079 126 aa1.69□□□□□ -2.14
VPS4B-203ENST00000588323 TSLPQ969D9 159 aa1.69□□□□□ -2.14
VPS4B-203ENST00000588323 MRPS24Q96EL2 167 aaKnown RBP1.69□□□□□ -2.14
VPS4B-203ENST00000588323 S100A16Q96FQ6 103 aaKnown RBP1.69□□□□□ -2.14
VPS4B-203ENST00000588323 DPH3Q96FX2 82 aa1.69□□□□□ -2.14
VPS4B-203ENST00000588323 ZC2HC1AQ96GY0 325 aa1.69□□□□□ -2.14
VPS4B-203ENST00000588323 PRELID3AQ96N28 172 aa1.69□□□□□ -2.14
VPS4B-203ENST00000588323 HIST1H2BNQ99877 126 aa1.69□□□□□ -2.14
VPS4B-203ENST00000588323 HIST1H2BMQ99879 126 aa1.69□□□□□ -2.14
VPS4B-203ENST00000588323 TMEM106BQ9NUM4 274 aa1.69□□□□□ -2.14
VPS4B-203ENST00000588323 RNF11Q9Y3C5 154 aa1.69□□□□□ -2.14
VPS4B-203ENST00000588323 CHCHD2Q9Y6H1 151 aaPredicted RBP1.69□□□□□ -2.14
VPS4B-203ENST00000588323 HRNRQ86YZ3 2850 aaPredicted RBP1.69□□□□□ -2.14
VPS4B-203ENST00000588323 VWFP04275 2813 aa1.68□□□□□ -2.14
VPS4B-203ENST00000588323 TRAV12-2A0A075B6T6 113 aa1.68□□□□□ -2.14
VPS4B-203ENST00000588323 TRAV41A0A0B4J266 112 aa1.68□□□□□ -2.14
VPS4B-203ENST00000588323 A8MUN3 132 aa1.68□□□□□ -2.14
VPS4B-203ENST00000588323 LST1O00453 97 aa1.68□□□□□ -2.14
VPS4B-203ENST00000588323 GNGT2O14610 69 aa1.68□□□□□ -2.14
VPS4B-203ENST00000588323 SOD1P00441 154 aa1.68□□□□□ -2.14
VPS4B-203ENST00000588323 GYPAP02724 150 aa1.68□□□□□ -2.14
VPS4B-203ENST00000588323 INAFM2P0DMQ5 153 aa1.68□□□□□ -2.14
VPS4B-203ENST00000588323 IGHV3-30-3P0DP02 117 aa1.68□□□□□ -2.14
VPS4B-203ENST00000588323 HLA-DRB4P13762 266 aa1.68□□□□□ -2.14
VPS4B-203ENST00000588323 SLC25A16P16260 332 aa1.68□□□□□ -2.14
VPS4B-203ENST00000588323 FAUP35544 74 aaKnown RBP1.68□□□□□ -2.14
VPS4B-203ENST00000588323 HINT1P49773 126 aaPredicted RBP1.68□□□□□ -2.14
VPS4B-203ENST00000588323 YPEL3P61236 119 aaPredicted RBP1.68□□□□□ -2.14
VPS4B-203ENST00000588323 UBE2BP63146 152 aa1.68□□□□□ -2.14
VPS4B-203ENST00000588323 Q5XG85 94 aa1.68□□□□□ -2.14
VPS4B-203ENST00000588323 Q6AWC8 147 aa1.68□□□□□ -2.14
VPS4B-203ENST00000588323 UNQ5815/PRO19632Q6UWF5 114 aa1.68□□□□□ -2.14
VPS4B-203ENST00000588323 SDIM1Q6ZPB5 146 aa1.68□□□□□ -2.14
VPS4B-203ENST00000588323 AAED1Q7RTV5 226 aa1.68□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms