RNA–Protein interactions for RNA: ENST00000588059.5

VPS4B-202, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 5

Gene VPS4B, Length 1,252 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-202ENST00000588059 GAGE4Q13068 117 aa7.17□□□□□ -1.26
VPS4B-202ENST00000588059 GAGE5Q13069 117 aa7.17□□□□□ -1.26
VPS4B-202ENST00000588059 GAGE13Q4V321 117 aa7.17□□□□□ -1.26
VPS4B-202ENST00000588059 ALKAL2Q6UX46 152 aa7.17□□□□□ -1.26
VPS4B-202ENST00000588059 MED9Q9NWA0 146 aa7.17□□□□□ -1.26
VPS4B-202ENST00000588059 PDE6DO43924 150 aa7.16□□□□□ -1.26
VPS4B-202ENST00000588059 LINC00694P0DN24 101 aa7.16□□□□□ -1.26
VPS4B-202ENST00000588059 GNG4P50150 75 aa7.16□□□□□ -1.26
VPS4B-202ENST00000588059 NKX2-5P52952 324 aaPredicted RBP7.16□□□□□ -1.26
VPS4B-202ENST00000588059 SSTP61278 116 aa7.16□□□□□ -1.26
VPS4B-202ENST00000588059 C14orf178Q8N769 122 aaPredicted RBP7.16□□□□□ -1.26
VPS4B-202ENST00000588059 RMI2Q96E14 147 aa7.16□□□□□ -1.26
VPS4B-202ENST00000588059 SFRP2Q96HF1 295 aa7.16□□□□□ -1.26
VPS4B-202ENST00000588059 VAX2Q9UIW0 290 aa7.16□□□□□ -1.26
VPS4B-202ENST00000588059 IGKV2D-24A0A075B6R9 120 aa7.15□□□□□ -1.26
VPS4B-202ENST00000588059 MUC21A0A0G2JKD1 596 aa7.15□□□□□ -1.26
VPS4B-202ENST00000588059 MUC21A0A140T8X8 626 aa7.15□□□□□ -1.26
VPS4B-202ENST00000588059 UFSP1Q6NVU6 142 aa7.15□□□□□ -1.26
VPS4B-202ENST00000588059 OR10AG1Q8NH19 301 aa7.15□□□□□ -1.26
VPS4B-202ENST00000588059 CXCL1P09341 107 aa7.14□□□□□ -1.27
VPS4B-202ENST00000588059 TAGLN2P37802 199 aaKnown RBP7.14□□□□□ -1.27
VPS4B-202ENST00000588059 BLOC1S1P78537 153 aa7.14□□□□□ -1.27
VPS4B-202ENST00000588059 SPANXN1Q5VSR9 72 aa7.14□□□□□ -1.27
VPS4B-202ENST00000588059 TPPP3Q9BW30 176 aa7.14□□□□□ -1.27
VPS4B-202ENST00000588059 Q9UF83 564 aa7.14□□□□□ -1.27
VPS4B-202ENST00000588059 GZMBP10144 247 aa7.13□□□□□ -1.27
VPS4B-202ENST00000588059 ZNF56Q15929 161 aa7.13□□□□□ -1.27
VPS4B-202ENST00000588059 OR2D3Q8NGH3 330 aa7.13□□□□□ -1.27
VPS4B-202ENST00000588059 SNAI2O43623 268 aa7.12□□□□□ -1.27
VPS4B-202ENST00000588059 P01737 135 aa7.12□□□□□ -1.27
VPS4B-202ENST00000588059 OR5AL1P0C617 328 aa7.12□□□□□ -1.27
VPS4B-202ENST00000588059 RPS20P60866 119 aaKnown RBP7.12□□□□□ -1.27
VPS4B-202ENST00000588059 ATRAIDQ6UW56 229 aa7.12□□□□□ -1.27
VPS4B-202ENST00000588059 Q6ZRU5 148 aa7.12□□□□□ -1.27
VPS4B-202ENST00000588059 SMIM12Q96EX1 92 aa7.12□□□□□ -1.27
VPS4B-202ENST00000588059 BIN3Q9NQY0 253 aa7.12□□□□□ -1.27
VPS4B-202ENST00000588059 KLK12Q9UKR0 248 aa7.12□□□□□ -1.27
VPS4B-202ENST00000588059 TRBV20OR9-2A0A075B6H5 130 aa7.11□□□□□ -1.27
VPS4B-202ENST00000588059 A0A087WWC5 75 aa7.11□□□□□ -1.27
VPS4B-202ENST00000588059 C19orf71A6NCJ1 209 aa7.11□□□□□ -1.27
VPS4B-202ENST00000588059 F5H697 171 aa7.11□□□□□ -1.27
VPS4B-202ENST00000588059 SMIM17P0DL12 118 aa7.11□□□□□ -1.27
VPS4B-202ENST00000588059 CEBPGP53567 150 aa7.11□□□□□ -1.27
VPS4B-202ENST00000588059 RPL36AP83881 106 aaKnown RBP7.11□□□□□ -1.27
VPS4B-202ENST00000588059 NIT1Q86X76 327 aa7.11□□□□□ -1.27
VPS4B-202ENST00000588059 FER1L6-AS1Q8NA97 138 aa7.11□□□□□ -1.27
VPS4B-202ENST00000588059 RPL36ALQ969Q0 106 aaKnown RBP7.11□□□□□ -1.27
VPS4B-202ENST00000588059 UBE2WQ96B02 151 aa7.11□□□□□ -1.27
VPS4B-202ENST00000588059 SSBP4Q9BWG4 385 aaPredicted RBP7.11□□□□□ -1.27
VPS4B-202ENST00000588059 URGCP-MRPS24S4R325 110 aa7.11□□□□□ -1.27
VPS4B-202ENST00000588059 TRBV10-1A0A0K0K1A3 114 aa7.1□□□□□ -1.27
VPS4B-202ENST00000588059 XKRY2A2RUG3 117 aa7.1□□□□□ -1.27
VPS4B-202ENST00000588059 RAB4BP61018 213 aa7.1□□□□□ -1.27
VPS4B-202ENST00000588059 C14orf177Q52M58 125 aa7.1□□□□□ -1.27
VPS4B-202ENST00000588059 AP1S3Q96PC3 154 aa7.1□□□□□ -1.27
VPS4B-202ENST00000588059 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.1□□□□□ -1.27
VPS4B-202ENST00000588059 PANO1I0J062 215 aa7.09□□□□□ -1.27
VPS4B-202ENST00000588059 MGPP08493 103 aa7.09□□□□□ -1.27
VPS4B-202ENST00000588059 NUDT10Q8NFP7 164 aa7.09□□□□□ -1.27
VPS4B-202ENST00000588059 OCC1Q8TAD7 63 aa7.09□□□□□ -1.27
VPS4B-202ENST00000588059 NUDT11Q96G61 164 aa7.09□□□□□ -1.27
VPS4B-202ENST00000588059 EIF5A2Q9GZV4 153 aaKnown RBP7.09□□□□□ -1.27
VPS4B-202ENST00000588059 TRBV7-3A0A075B6L6 115 aa7.08□□□□□ -1.28
VPS4B-202ENST00000588059 TMEM250H0YL14 139 aa7.08□□□□□ -1.28
VPS4B-202ENST00000588059 IGLC6P0CF74 106 aa7.08□□□□□ -1.28
VPS4B-202ENST00000588059 CACNG7P62955 275 aa7.08□□□□□ -1.28
VPS4B-202ENST00000588059 LYPD6BQ8NI32 183 aa7.08□□□□□ -1.28
VPS4B-202ENST00000588059 CHCHD7Q9BUK0 85 aa7.08□□□□□ -1.28
VPS4B-202ENST00000588059 RNASE7Q9H1E1 156 aaKnown RBP7.08□□□□□ -1.28
VPS4B-202ENST00000588059 USP17L23D6RBM5 183 aa7.07□□□□□ -1.28
VPS4B-202ENST00000588059 F2Z2F3 143 aa7.07□□□□□ -1.28
VPS4B-202ENST00000588059 K7EN84 100 aa7.07□□□□□ -1.28
VPS4B-202ENST00000588059 UBE2D3P61077 147 aa7.07□□□□□ -1.28
VPS4B-202ENST00000588059 UBE2D2P62837 147 aa7.07□□□□□ -1.28
VPS4B-202ENST00000588059 LYZL1Q6UWQ5 148 aa7.07□□□□□ -1.28
VPS4B-202ENST00000588059 SREK1IP1Q8N9Q2 155 aaPredicted RBP7.07□□□□□ -1.28
VPS4B-202ENST00000588059 NEXN-AS1Q8NBZ9 246 aa7.07□□□□□ -1.28
VPS4B-202ENST00000588059 C1orf43Q9BWL3 253 aa7.07□□□□□ -1.28
VPS4B-202ENST00000588059 RPP21Q9H633 154 aaKnown RBP7.07□□□□□ -1.28
VPS4B-202ENST00000588059 A0A087WX48 190 aa7.06□□□□□ -1.28
VPS4B-202ENST00000588059 Q0VG73 95 aa7.06□□□□□ -1.28
VPS4B-202ENST00000588059 ELOBQ15370 118 aa7.06□□□□□ -1.28
VPS4B-202ENST00000588059 KCNIP4Q6PIL6 250 aa7.06□□□□□ -1.28
VPS4B-202ENST00000588059 C9orf163Q8N9P6 203 aa7.06□□□□□ -1.28
VPS4B-202ENST00000588059 OR10G8Q8NGN5 311 aa7.06□□□□□ -1.28
VPS4B-202ENST00000588059 KIF25-AS1Q9Y6Z4 181 aa7.06□□□□□ -1.28
VPS4B-202ENST00000588059 TMEM262E9PQX1 116 aa7.05□□□□□ -1.28
VPS4B-202ENST00000588059 GATCO43716 136 aaKnown RBP7.05□□□□□ -1.28
VPS4B-202ENST00000588059 PRSS1P07477 247 aa7.05□□□□□ -1.28
VPS4B-202ENST00000588059 TRGC1P0CF51 173 aa7.05□□□□□ -1.28
VPS4B-202ENST00000588059 NTF3P20783 257 aa7.05□□□□□ -1.28
VPS4B-202ENST00000588059 ODF1Q14990 250 aa7.05□□□□□ -1.28
VPS4B-202ENST00000588059 TWIST1Q15672 202 aa7.05□□□□□ -1.28
VPS4B-202ENST00000588059 ENHOQ6UWT2 76 aa7.05□□□□□ -1.28
VPS4B-202ENST00000588059 FAM210AQ96ND0 272 aa7.05□□□□□ -1.28
VPS4B-202ENST00000588059 SMIM7Q9BQ49 75 aa7.05□□□□□ -1.28
VPS4B-202ENST00000588059 H7C1H1 209 aa7.04□□□□□ -1.28
VPS4B-202ENST00000588059 HLA-DQA1P01909 254 aa7.04□□□□□ -1.28
VPS4B-202ENST00000588059 SUMO4Q6EEV6 95 aa7.04□□□□□ -1.28
VPS4B-202ENST00000588059 DGAT2L7PQ6IED9 249 aa7.04□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms