RNA–Protein interactions for RNA: ENST00000582352.1

SHMT1-208, Transcript of serine hydroxymethyltransferase 1, humanhuman

Gene SHMT1, Length 2,756 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-208ENST00000582352 ERG28Q9UKR5 140 aa9.06□□□□□ -0.96
SHMT1-208ENST00000582352 IGHV1OR15-1A0A075B7D0 117 aa9.05□□□□□ -0.96
SHMT1-208ENST00000582352 A0A0J9YX75 114 aa9.05□□□□□ -0.96
SHMT1-208ENST00000582352 I3L3M4 83 aa9.05□□□□□ -0.96
SHMT1-208ENST00000582352 SLC25A20O43772 301 aa9.05□□□□□ -0.96
SHMT1-208ENST00000582352 Q1RN00 199 aa9.05□□□□□ -0.96
SHMT1-208ENST00000582352 A0A0B4J2C4 111 aa9.05□□□□□ -0.96
SHMT1-208ENST00000582352 C9JAW5 83 aa9.05□□□□□ -0.96
SHMT1-208ENST00000582352 C19orf84I3L1E1 186 aa9.05□□□□□ -0.96
SHMT1-208ENST00000582352 IGHV3-33P01772 117 aa9.05□□□□□ -0.96
SHMT1-208ENST00000582352 CFHR3Q02985 330 aa9.05□□□□□ -0.96
SHMT1-208ENST00000582352 SPINK13Q1W4C9 94 aa9.05□□□□□ -0.96
SHMT1-208ENST00000582352 TMEM95Q3KNT9 176 aa9.05□□□□□ -0.96
SHMT1-208ENST00000582352 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.04□□□□□ -0.96
SHMT1-208ENST00000582352 P0DMU3 169 aa9.04□□□□□ -0.96
SHMT1-208ENST00000582352 FAM231AP0DMU4 169 aa9.04□□□□□ -0.96
SHMT1-208ENST00000582352 FAM231CP0DMU5 169 aa9.04□□□□□ -0.96
SHMT1-208ENST00000582352 TMEM263Q8WUH6 116 aaKnown RBP9.04□□□□□ -0.96
SHMT1-208ENST00000582352 A0A0J9YXV3 536 aa9.04□□□□□ -0.96
SHMT1-208ENST00000582352 MUSTN1Q8IVN3 82 aa9.04□□□□□ -0.96
SHMT1-208ENST00000582352 IGLV4-3A0A075B6K6 122 aa9.03□□□□□ -0.96
SHMT1-208ENST00000582352 TMEM262E9PQX1 116 aa9.03□□□□□ -0.96
SHMT1-208ENST00000582352 VPS13CQ709C8 3753 aa9.03□□□□□ -0.96
SHMT1-208ENST00000582352 C10orf105Q8TEF2 133 aa9.02□□□□□ -0.96
SHMT1-208ENST00000582352 M0QXV9 152 aa9.02□□□□□ -0.97
SHMT1-208ENST00000582352 EIF4EBP3O60516 100 aaPredicted RBP9.02□□□□□ -0.97
SHMT1-208ENST00000582352 CD28P10747 220 aa9.02□□□□□ -0.97
SHMT1-208ENST00000582352 LY6DQ14210 128 aa9.02□□□□□ -0.97
SHMT1-208ENST00000582352 CCL19Q99731 98 aa9.02□□□□□ -0.97
SHMT1-208ENST00000582352 TRGV11A0A075B6L2 103 aa9.01□□□□□ -0.97
SHMT1-208ENST00000582352 MSMBP08118 114 aa9.01□□□□□ -0.97
SHMT1-208ENST00000582352 PSMB8P28062 276 aa9.01□□□□□ -0.97
SHMT1-208ENST00000582352 TIMM21Q9BVV7 248 aa9.01□□□□□ -0.97
SHMT1-208ENST00000582352 TRAV26-1A0A087WT03 109 aa9.01□□□□□ -0.97
SHMT1-208ENST00000582352 A0A0J9YXY3 114 aa9.01□□□□□ -0.97
SHMT1-208ENST00000582352 K7EQG2 157 aa9.01□□□□□ -0.97
SHMT1-208ENST00000582352 M0R2P5 195 aa9.01□□□□□ -0.97
SHMT1-208ENST00000582352 ATXN8Q156A1 80 aa9.01□□□□□ -0.97
SHMT1-208ENST00000582352 ZNF580Q9UK33 172 aa9.01□□□□□ -0.97
SHMT1-208ENST00000582352 IGHV3-30-3P0DP02 117 aa9□□□□□ -0.97
SHMT1-208ENST00000582352 SPXQ9BT56 116 aa9□□□□□ -0.97
SHMT1-208ENST00000582352 COL12A1Q99715 3063 aa9□□□□□ -0.97
SHMT1-208ENST00000582352 ADARB2-AS1A8MUL3 147 aa8.99□□□□□ -0.97
SHMT1-208ENST00000582352 CLUHP3Q96NS8 147 aa8.99□□□□□ -0.97
SHMT1-208ENST00000582352 IGHV4-30-2A0A087WSY4 118 aa8.99□□□□□ -0.97
SHMT1-208ENST00000582352 ATP5J2P56134 94 aa8.99□□□□□ -0.97
SHMT1-208ENST00000582352 Q5PR19 223 aa8.99□□□□□ -0.97
SHMT1-208ENST00000582352 BEX4Q9NWD9 120 aaPredicted RBP8.99□□□□□ -0.97
SHMT1-208ENST00000582352 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP8.98□□□□□ -0.97
SHMT1-208ENST00000582352 IGHV3-73A0A0B4J1V6 119 aa8.98□□□□□ -0.97
SHMT1-208ENST00000582352 HTN1P15515 57 aa8.98□□□□□ -0.97
SHMT1-208ENST00000582352 SYNJ2BPP57105 145 aa8.98□□□□□ -0.97
SHMT1-208ENST00000582352 LINC01620Q4KN68 170 aa8.98□□□□□ -0.97
SHMT1-208ENST00000582352 ZFAND6Q6FIF0 208 aa8.98□□□□□ -0.97
SHMT1-208ENST00000582352 C10orf99Q6UWK7 81 aa8.98□□□□□ -0.97
SHMT1-208ENST00000582352 PYGO1Q9Y3Y4 419 aa8.98□□□□□ -0.97
SHMT1-208ENST00000582352 PRSS2P07478 247 aa8.98□□□□□ -0.97
SHMT1-208ENST00000582352 ELANEP08246 267 aa8.98□□□□□ -0.97
SHMT1-208ENST00000582352 NTN5Q8WTR8 489 aaPredicted RBP8.98□□□□□ -0.97
SHMT1-208ENST00000582352 MRPS36P82909 103 aaKnown RBP8.97□□□□□ -0.97
SHMT1-208ENST00000582352 TEX29Q8N6K0 151 aa8.97□□□□□ -0.97
SHMT1-208ENST00000582352 ANAPC13Q9BS18 74 aa8.97□□□□□ -0.97
SHMT1-208ENST00000582352 DOPEY2Q9Y3R5 2298 aa8.97□□□□□ -0.97
SHMT1-208ENST00000582352 TRAV8-3A0A0A6YYJ7 113 aa8.97□□□□□ -0.97
SHMT1-208ENST00000582352 TRBV30A0A0K0K1B3 111 aa8.97□□□□□ -0.97
SHMT1-208ENST00000582352 TRIAP1O43715 76 aa8.97□□□□□ -0.97
SHMT1-208ENST00000582352 GNLYP22749 145 aa8.97□□□□□ -0.97
SHMT1-208ENST00000582352 TNFRSF18Q9Y5U5 241 aa8.97□□□□□ -0.97
SHMT1-208ENST00000582352 IGHV4-59P01825 116 aa8.96□□□□□ -0.97
SHMT1-208ENST00000582352 NDUFA12Q9UI09 145 aa8.96□□□□□ -0.97
SHMT1-208ENST00000582352 IGHV1-58A0A0C4DH39 117 aa8.96□□□□□ -0.98
SHMT1-208ENST00000582352 RNASE13Q5GAN3 156 aaKnown RBP8.96□□□□□ -0.98
SHMT1-208ENST00000582352 CEMP1Q6PRD7 247 aaPredicted RBP8.96□□□□□ -0.98
SHMT1-208ENST00000582352 LITAFQ99732 161 aa8.96□□□□□ -0.98
SHMT1-208ENST00000582352 EDA2RQ9HAV5 297 aa8.96□□□□□ -0.98
SHMT1-208ENST00000582352 MAP1AP78559 2803 aaPredicted RBP8.96□□□□□ -0.98
SHMT1-208ENST00000582352 PRRC2AP48634 2157 aaKnown RBP8.96□□□□□ -0.98
SHMT1-208ENST00000582352 SNCGO76070 127 aa8.95□□□□□ -0.98
SHMT1-208ENST00000582352 AVPP01185 164 aa8.95□□□□□ -0.98
SHMT1-208ENST00000582352 NCOR2Q9Y618 2525 aa8.95□□□□□ -0.98
SHMT1-208ENST00000582352 TMEM89A2RUT3 159 aa8.95□□□□□ -0.98
SHMT1-208ENST00000582352 B4DSR2 109 aa8.95□□□□□ -0.98
SHMT1-208ENST00000582352 RNF183Q96D59 192 aa8.95□□□□□ -0.98
SHMT1-208ENST00000582352 DUX5Q96PT3 197 aa8.95□□□□□ -0.98
SHMT1-208ENST00000582352 SORL1Q92673 2214 aa8.95□□□□□ -0.98
SHMT1-208ENST00000582352 TRBV10-2A0A0K0K1G8 114 aa8.95□□□□□ -0.98
SHMT1-208ENST00000582352 SPANXDQ9BXN6 97 aa8.95□□□□□ -0.98
SHMT1-208ENST00000582352 SPANXCQ9NY87 97 aa8.95□□□□□ -0.98
SHMT1-208ENST00000582352 ICOSQ9Y6W8 199 aa8.95□□□□□ -0.98
SHMT1-208ENST00000582352 CSPG4Q6UVK1 2322 aa8.94□□□□□ -0.98
SHMT1-208ENST00000582352 RBMY1A1P0DJD3 496 aaKnown RBP8.94□□□□□ -0.98
SHMT1-208ENST00000582352 RBMY1CP0DJD4 496 aa8.94□□□□□ -0.98
SHMT1-208ENST00000582352 PROK1P58294 105 aa8.94□□□□□ -0.98
SHMT1-208ENST00000582352 RBMY1FQ15415 496 aaKnown RBP8.94□□□□□ -0.98
SHMT1-208ENST00000582352 MIAQ16674 131 aa8.94□□□□□ -0.98
SHMT1-208ENST00000582352 CITED1Q99966 193 aa8.94□□□□□ -0.98
SHMT1-208ENST00000582352 CHD8Q9HCK8 2581 aa8.94□□□□□ -0.98
SHMT1-208ENST00000582352 TEX49A0A1B0GTD5 131 aa8.94□□□□□ -0.98
SHMT1-208ENST00000582352 H3BMM0 161 aa8.94□□□□□ -0.98
SHMT1-208ENST00000582352 COX6CP09669 75 aa8.94□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms