RNA–Protein interactions for RNA: ENST00000581570.5

SS18-219, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 571 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-219ENST00000581570 ZNF56Q15929 161 aa7.97□□□□□ -1.13
SS18-219ENST00000581570 MAJINQ3KP22 176 aa7.97□□□□□ -1.13
SS18-219ENST00000581570 PRR27Q6MZM9 219 aa7.97□□□□□ -1.13
SS18-219ENST00000581570 TMSB15BA0A087X1C1 80 aa7.96□□□□□ -1.14
SS18-219ENST00000581570 TRAV8-4A0A0B4J246 113 aa7.96□□□□□ -1.14
SS18-219ENST00000581570 MPC2O95563 127 aa7.96□□□□□ -1.14
SS18-219ENST00000581570 CXorf1O96002 111 aa7.96□□□□□ -1.14
SS18-219ENST00000581570 P01737 135 aa7.96□□□□□ -1.14
SS18-219ENST00000581570 COX6A2Q02221 97 aa7.96□□□□□ -1.14
SS18-219ENST00000581570 LYPD6BQ8NI32 183 aa7.96□□□□□ -1.14
SS18-219ENST00000581570 DERL1Q9BUN8 251 aa7.96□□□□□ -1.14
SS18-219ENST00000581570 TRBV25-1A0A075B6N4 114 aa7.95□□□□□ -1.14
SS18-219ENST00000581570 A0A1W2PRE2 83 aa7.95□□□□□ -1.14
SS18-219ENST00000581570 IFNA7P01567 189 aa7.95□□□□□ -1.14
SS18-219ENST00000581570 PET100P0DJ07 73 aa7.95□□□□□ -1.14
SS18-219ENST00000581570 RAB5CP51148 216 aa7.95□□□□□ -1.14
SS18-219ENST00000581570 H2BFSP57053 126 aa7.95□□□□□ -1.14
SS18-219ENST00000581570 FAM162BQ5T6X4 162 aa7.95□□□□□ -1.14
SS18-219ENST00000581570 MZT2BQ6NZ67 158 aa7.95□□□□□ -1.14
SS18-219ENST00000581570 Q86TA4 180 aa7.95□□□□□ -1.14
SS18-219ENST00000581570 STPG4Q8N801 248 aa7.95□□□□□ -1.14
SS18-219ENST00000581570 IGKV2-24A0A0C4DH68 120 aa7.94□□□□□ -1.14
SS18-219ENST00000581570 MUC21A0A0G2JKD1 596 aa7.94□□□□□ -1.14
SS18-219ENST00000581570 TRBV6-1A0A0K0K1D8 114 aa7.94□□□□□ -1.14
SS18-219ENST00000581570 NDUFS6O75380 124 aaKnown RBP7.94□□□□□ -1.14
SS18-219ENST00000581570 GZMBP10144 247 aa7.94□□□□□ -1.14
SS18-219ENST00000581570 PRSS3P2Q8NHM4 247 aa7.94□□□□□ -1.14
SS18-219ENST00000581570 VAX2Q9UIW0 290 aa7.94□□□□□ -1.14
SS18-219ENST00000581570 F5H697 171 aa7.93□□□□□ -1.14
SS18-219ENST00000581570 PEX7O00628 323 aa7.93□□□□□ -1.14
SS18-219ENST00000581570 RPS10P46783 165 aaKnown RBP7.93□□□□□ -1.14
SS18-219ENST00000581570 SRSF9Q13242 221 aaKnown RBP eCLIP7.93□□□□□ -1.14
SS18-219ENST00000581570 COX8CQ7Z4L0 72 aa7.93□□□□□ -1.14
SS18-219ENST00000581570 C20orf203Q8NBC4 194 aa7.93□□□□□ -1.14
SS18-219ENST00000581570 ZFP30Q9Y2G7 519 aa7.93□□□□□ -1.14
SS18-219ENST00000581570 IGHV1-24A0A0C4DH33 117 aa7.92□□□□□ -1.14
SS18-219ENST00000581570 MBP02144 154 aa7.92□□□□□ -1.14
SS18-219ENST00000581570 IQCJQ1A5X6 159 aa7.92□□□□□ -1.14
SS18-219ENST00000581570 ZNF674Q2M3X9 581 aa7.92□□□□□ -1.14
SS18-219ENST00000581570 CCDC32Q9BV29 185 aa7.92□□□□□ -1.14
SS18-219ENST00000581570 ACTR3CQ9C0K3 210 aaPredicted RBP7.92□□□□□ -1.14
SS18-219ENST00000581570 ATP6V0CP27449 155 aa7.91□□□□□ -1.14
SS18-219ENST00000581570 UBE2G2P60604 165 aa7.91□□□□□ -1.14
SS18-219ENST00000581570 CFAP161Q6P656 301 aa7.91□□□□□ -1.14
SS18-219ENST00000581570 HIST1H2BAQ96A08 127 aa7.91□□□□□ -1.14
SS18-219ENST00000581570 ZNF471Q9BX82 626 aaPredicted RBP7.91□□□□□ -1.14
SS18-219ENST00000581570 IGLV4-60A0A075B6I1 120 aa7.9□□□□□ -1.14
SS18-219ENST00000581570 LOC100996750A0A140TA64 210 aa7.9□□□□□ -1.14
SS18-219ENST00000581570 SERF2P84101 59 aa7.9□□□□□ -1.14
SS18-219ENST00000581570 C15orf56Q8N910 161 aa7.9□□□□□ -1.14
SS18-219ENST00000581570 OR10AG1Q8NH19 301 aa7.9□□□□□ -1.14
SS18-219ENST00000581570 ENKURQ8TC29 256 aa7.9□□□□□ -1.14
SS18-219ENST00000581570 PSMG3Q9BT73 122 aaPredicted RBP7.9□□□□□ -1.14
SS18-219ENST00000581570 KRTAP4-6Q9BYQ5 205 aa7.9□□□□□ -1.14
SS18-219ENST00000581570 GFRA4Q9GZZ7 299 aa7.9□□□□□ -1.14
SS18-219ENST00000581570 A0A1B0GUV1 79 aa7.89□□□□□ -1.15
SS18-219ENST00000581570 H7C1H1 209 aa7.89□□□□□ -1.15
SS18-219ENST00000581570 UBE2G1P62253 170 aa7.89□□□□□ -1.15
SS18-219ENST00000581570 HIGD2BQ4VC39 106 aa7.89□□□□□ -1.15
SS18-219ENST00000581570 Q6ZRP5 223 aa7.89□□□□□ -1.15
SS18-219ENST00000581570 FMC1Q96HJ9 113 aa7.89□□□□□ -1.15
SS18-219ENST00000581570 AQP10Q96PS8 301 aa7.89□□□□□ -1.15
SS18-219ENST00000581570 NKX6-2Q9C056 277 aaPredicted RBP7.89□□□□□ -1.15
SS18-219ENST00000581570 A0A096LNI7 61 aa7.88□□□□□ -1.15
SS18-219ENST00000581570 MUC21A0A140T8X8 626 aa7.88□□□□□ -1.15
SS18-219ENST00000581570 GAGE12HA6NDE8 117 aa7.88□□□□□ -1.15
SS18-219ENST00000581570 SPANXN1Q5VSR9 72 aa7.88□□□□□ -1.15
SS18-219ENST00000581570 TMEM243Q9BU79 118 aa7.88□□□□□ -1.15
SS18-219ENST00000581570 TNFSF18Q9UNG2 199 aa7.88□□□□□ -1.15
SS18-219ENST00000581570 FAM231BA6NCW3 169 aa7.87□□□□□ -1.15
SS18-219ENST00000581570 FAM74A7A6NL05 159 aa7.87□□□□□ -1.15
SS18-219ENST00000581570 INMT-MINDY4F8WBC2 141 aa7.87□□□□□ -1.15
SS18-219ENST00000581570 SSNA1O43805 119 aa7.87□□□□□ -1.15
SS18-219ENST00000581570 SMIM17P0DL12 118 aa7.87□□□□□ -1.15
SS18-219ENST00000581570 SULT1A2P50226 295 aa7.87□□□□□ -1.15
SS18-219ENST00000581570 SSTP61278 116 aa7.87□□□□□ -1.15
SS18-219ENST00000581570 KRTAP9-6A0A140TA67 174 aa7.86□□□□□ -1.15
SS18-219ENST00000581570 SNAI2O43623 268 aa7.86□□□□□ -1.15
SS18-219ENST00000581570 LTAP01374 205 aa7.86□□□□□ -1.15
SS18-219ENST00000581570 DEFA3P59666 94 aa7.86□□□□□ -1.15
SS18-219ENST00000581570 LINC00474Q9P2X8 69 aa7.86□□□□□ -1.15
SS18-219ENST00000581570 A0A0U1RQV1 116 aa7.85□□□□□ -1.15
SS18-219ENST00000581570 CXCL1P09341 107 aa7.85□□□□□ -1.15
SS18-219ENST00000581570 ZNF726P1Q15940 193 aa7.85□□□□□ -1.15
SS18-219ENST00000581570 INO80EQ8NBZ0 244 aaPredicted RBP7.85□□□□□ -1.15
SS18-219ENST00000581570 CTXND1A0A1B0GTU2 59 aa7.84□□□□□ -1.15
SS18-219ENST00000581570 UBE2L6O14933 153 aa7.84□□□□□ -1.15
SS18-219ENST00000581570 OR5AL1P0C617 328 aa7.84□□□□□ -1.15
SS18-219ENST00000581570 IGKV3OR2-268A0A0C4DH90 116 aa7.83□□□□□ -1.16
SS18-219ENST00000581570 M0QY20 66 aa7.83□□□□□ -1.16
SS18-219ENST00000581570 XP32Q5T750 250 aa7.83□□□□□ -1.16
SS18-219ENST00000581570 AP1S3Q96PC3 154 aa7.83□□□□□ -1.16
SS18-219ENST00000581570 MUC2Q02817 5179 aa7.83□□□□□ -1.16
SS18-219ENST00000581570 GVQW2A0A096LPI5 108 aaPredicted RBP7.82□□□□□ -1.16
SS18-219ENST00000581570 MGPP08493 103 aa7.82□□□□□ -1.16
SS18-219ENST00000581570 AKR1C3P42330 323 aa7.82□□□□□ -1.16
SS18-219ENST00000581570 NKX2-5P52952 324 aaPredicted RBP7.82□□□□□ -1.16
SS18-219ENST00000581570 ZNF664Q8N3J9 261 aa7.82□□□□□ -1.16
SS18-219ENST00000581570 MARVELD1Q9BSK0 173 aa7.82□□□□□ -1.16
SS18-219ENST00000581570 PSORS1C2Q9UIG4 136 aa7.82□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 79.8 ms