RNA–Protein interactions for RNA: ENST00000574855.1

NUP88-209, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 434 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-209ENST00000574855 SS18Q15532 418 aa2.14□□□□□ -2.07
NUP88-209ENST00000574855 HMGN3Q15651 99 aa2.14□□□□□ -2.07
NUP88-209ENST00000574855 FAM229BQ4G0N7 80 aa2.14□□□□□ -2.07
NUP88-209ENST00000574855 OR2T2Q6IF00 324 aa2.14□□□□□ -2.07
NUP88-209ENST00000574855 C2orf91Q6ZV80 131 aa2.14□□□□□ -2.07
NUP88-209ENST00000574855 KRTAP5-5Q701N2 237 aaPredicted RBP2.14□□□□□ -2.07
NUP88-209ENST00000574855 SLC25A26Q70HW3 274 aa2.14□□□□□ -2.07
NUP88-209ENST00000574855 C6orf201Q7Z4U5 140 aa2.14□□□□□ -2.07
NUP88-209ENST00000574855 TMEM105Q8N8V8 129 aa2.14□□□□□ -2.07
NUP88-209ENST00000574855 Q8NDZ9 215 aa2.14□□□□□ -2.07
NUP88-209ENST00000574855 C1orf64Q8NEQ6 169 aa2.14□□□□□ -2.07
NUP88-209ENST00000574855 PSMF1Q92530 271 aa2.14□□□□□ -2.07
NUP88-209ENST00000574855 AQP10Q96PS8 301 aa2.14□□□□□ -2.07
NUP88-209ENST00000574855 TTTY12Q9BZ98 90 aa2.14□□□□□ -2.07
NUP88-209ENST00000574855 SMDT1Q9H4I9 107 aa2.14□□□□□ -2.07
NUP88-209ENST00000574855 HTTP42858 3142 aa2.14□□□□□ -2.07
NUP88-209ENST00000574855 COL5A1P20908 1838 aaPredicted RBP2.14□□□□□ -2.07
NUP88-209ENST00000574855 SPTBP11277 2137 aa2.14□□□□□ -2.07
NUP88-209ENST00000574855 SEC16AO15027 2179 aa2.13□□□□□ -2.07
NUP88-209ENST00000574855 NACAE9PAV3 2078 aa2.13□□□□□ -2.07
NUP88-209ENST00000574855 PCDH15Q96QU1 1955 aa2.13□□□□□ -2.07
NUP88-209ENST00000574855 IGKV1D-37A0A075B6S9 117 aa2.13□□□□□ -2.07
NUP88-209ENST00000574855 TRBV6-6A0A0A6YYG2 114 aa2.13□□□□□ -2.07
NUP88-209ENST00000574855 TRAV17A0A0B4J275 112 aa2.13□□□□□ -2.07
NUP88-209ENST00000574855 COLCA2A8K830 154 aa2.13□□□□□ -2.07
NUP88-209ENST00000574855 UMAD1C9J7I0 102 aa2.13□□□□□ -2.07
NUP88-209ENST00000574855 TCL1BO95988 128 aa2.13□□□□□ -2.07
NUP88-209ENST00000574855 LHBP01229 141 aa2.13□□□□□ -2.07
NUP88-209ENST00000574855 XCL1P47992 114 aa2.13□□□□□ -2.07
NUP88-209ENST00000574855 FXYD4P59646 89 aa2.13□□□□□ -2.07
NUP88-209ENST00000574855 DEFA5Q01523 94 aa2.13□□□□□ -2.07
NUP88-209ENST00000574855 CIRBPQ14011 172 aaKnown RBP2.13□□□□□ -2.07
NUP88-209ENST00000574855 KHDC3LQ587J8 217 aa2.13□□□□□ -2.07
NUP88-209ENST00000574855 Q6P435 159 aa2.13□□□□□ -2.07
NUP88-209ENST00000574855 FP248Q71RG6 208 aaPredicted RBP2.13□□□□□ -2.07
NUP88-209ENST00000574855 MUC7Q8TAX7 377 aa2.13□□□□□ -2.07
NUP88-209ENST00000574855 CLEC2BQ92478 149 aa2.13□□□□□ -2.07
NUP88-209ENST00000574855 RAB37Q96AX2 223 aa2.13□□□□□ -2.07
NUP88-209ENST00000574855 CHCHD1Q96BP2 118 aaKnown RBP2.13□□□□□ -2.07
NUP88-209ENST00000574855 LINC00052Q96N35 136 aa2.13□□□□□ -2.07
NUP88-209ENST00000574855 IMMP2LQ96T52 175 aa2.13□□□□□ -2.07
NUP88-209ENST00000574855 REG4Q9BYZ8 158 aa2.13□□□□□ -2.07
NUP88-209ENST00000574855 NPVFQ9HCQ7 196 aa2.13□□□□□ -2.07
NUP88-209ENST00000574855 TMEM106BQ9NUM4 274 aa2.13□□□□□ -2.07
NUP88-209ENST00000574855 ASF1BQ9NVP2 202 aa2.13□□□□□ -2.07
NUP88-209ENST00000574855 CACFD1Q9UGQ2 172 aa2.13□□□□□ -2.07
NUP88-209ENST00000574855 TRAPPC1Q9Y5R8 145 aa2.13□□□□□ -2.07
NUP88-209ENST00000574855 CEP350Q5VT06 3117 aa2.13□□□□□ -2.07
NUP88-209ENST00000574855 CEP192Q8TEP8 1941 aa2.13□□□□□ -2.07
NUP88-209ENST00000574855 KIAA1549Q9HCM3 1950 aa2.12□□□□□ -2.07
NUP88-209ENST00000574855 COL27A1Q8IZC6 1860 aaPredicted RBP2.12□□□□□ -2.07
NUP88-209ENST00000574855 A6NN06 94 aa2.12□□□□□ -2.07
NUP88-209ENST00000574855 C17orf98A8MV24 154 aa2.12□□□□□ -2.07
NUP88-209ENST00000574855 K7EM74 188 aa2.12□□□□□ -2.07
NUP88-209ENST00000574855 TIMM17BO60830 172 aa2.12□□□□□ -2.07
NUP88-209ENST00000574855 HYPMO75409 117 aa2.12□□□□□ -2.07
NUP88-209ENST00000574855 PPYP01298 95 aa2.12□□□□□ -2.07
NUP88-209ENST00000574855 PRH1P02810 166 aa2.12□□□□□ -2.07
NUP88-209ENST00000574855 ZNF705BP0CI00 300 aaPredicted RBP2.12□□□□□ -2.07
NUP88-209ENST00000574855 SLC25A6P12236 298 aa2.12□□□□□ -2.07
NUP88-209ENST00000574855 RPS10P46783 165 aaKnown RBP2.12□□□□□ -2.07
NUP88-209ENST00000574855 IGFBP7Q16270 282 aa2.12□□□□□ -2.07
NUP88-209ENST00000574855 PIGYQ3MUY2 71 aa2.12□□□□□ -2.07
NUP88-209ENST00000574855 DPPA3Q6W0C5 159 aa2.12□□□□□ -2.07
NUP88-209ENST00000574855 LYZL2Q7Z4W2 148 aa2.12□□□□□ -2.07
NUP88-209ENST00000574855 SPANXA2-OT1Q8N9U9 137 aa2.12□□□□□ -2.07
NUP88-209ENST00000574855 C10orf105Q8TEF2 133 aa2.12□□□□□ -2.07
NUP88-209ENST00000574855 DSCR8Q96T75 97 aa2.12□□□□□ -2.07
NUP88-209ENST00000574855 NABP2Q9BQ15 211 aa2.12□□□□□ -2.07
NUP88-209ENST00000574855 CYTL1Q9NRR1 136 aa2.12□□□□□ -2.07
NUP88-209ENST00000574855 BET1LQ9NYM9 111 aa2.12□□□□□ -2.07
NUP88-209ENST00000574855 CENPFP49454 3210 aa2.12□□□□□ -2.07
NUP88-209ENST00000574855 ARID1AO14497 2285 aa2.12□□□□□ -2.07
NUP88-209ENST00000574855 KNL1Q8NG31 2342 aa2.12□□□□□ -2.07
NUP88-209ENST00000574855 PCNTO95613 3336 aa2.12□□□□□ -2.07
NUP88-209ENST00000574855 RP1P56715 2156 aa2.12□□□□□ -2.07
NUP88-209ENST00000574855 FREM3P0C091 2139 aa2.11□□□□□ -2.07
NUP88-209ENST00000574855 TMEM30CPA0ZSE6 113 aa2.11□□□□□ -2.07
NUP88-209ENST00000574855 IQCF6A8MYZ5 107 aa2.11□□□□□ -2.07
NUP88-209ENST00000574855 H3BQ15 152 aa2.11□□□□□ -2.07
NUP88-209ENST00000574855 YPEL1O60688 119 aa2.11□□□□□ -2.07
NUP88-209ENST00000574855 MSMBP08118 114 aa2.11□□□□□ -2.07
NUP88-209ENST00000574855 SAA1P0DJI8 122 aaPredicted RBP2.11□□□□□ -2.07
NUP88-209ENST00000574855 DEFA4P12838 97 aa2.11□□□□□ -2.07
NUP88-209ENST00000574855 CD24P25063 80 aa2.11□□□□□ -2.07
NUP88-209ENST00000574855 NPC2P61916 151 aa2.11□□□□□ -2.07
NUP88-209ENST00000574855 Q0VG73 95 aa2.11□□□□□ -2.07
NUP88-209ENST00000574855 RPL7L1Q6DKI1 246 aaKnown RBP2.11□□□□□ -2.07
NUP88-209ENST00000574855 Q6ZR03 302 aa2.11□□□□□ -2.07
NUP88-209ENST00000574855 DYNAPQ8N1N2 210 aa2.11□□□□□ -2.07
NUP88-209ENST00000574855 MUCL1Q96DR8 90 aa2.11□□□□□ -2.07
NUP88-209ENST00000574855 RETNLBQ9BQ08 111 aa2.11□□□□□ -2.07
NUP88-209ENST00000574855 SMCO4Q9NRQ5 59 aa2.11□□□□□ -2.07
NUP88-209ENST00000574855 HHLA3Q9XRX5 114 aa2.11□□□□□ -2.07
NUP88-209ENST00000574855 CACNA1CQ13936 2221 aa2.11□□□□□ -2.07
NUP88-209ENST00000574855 ASXL3Q9C0F0 2248 aa2.11□□□□□ -2.07
NUP88-209ENST00000574855 CABIN1Q9Y6J0 2220 aa2.11□□□□□ -2.07
NUP88-209ENST00000574855 CPAMD8Q8IZJ3 1885 aa2.11□□□□□ -2.07
NUP88-209ENST00000574855 MPDZO75970 2070 aa2.11□□□□□ -2.07
NUP88-209ENST00000574855 ALPK2Q86TB3 2170 aa2.1□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 100.1 ms