RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 UBE2D2P62837 147 aa6.38□□□□□ -1.39
VPS35-211ENST00000569950 HBBP68871 147 aa6.38□□□□□ -1.39
VPS35-211ENST00000569950 RIGQ13278 110 aa6.38□□□□□ -1.39
VPS35-211ENST00000569950 ELOBQ15370 118 aa6.38□□□□□ -1.39
VPS35-211ENST00000569950 ZNF56Q15929 161 aa6.38□□□□□ -1.39
VPS35-211ENST00000569950 MRPL51Q4U2R6 128 aaKnown RBP6.38□□□□□ -1.39
VPS35-211ENST00000569950 LCE2CQ5TA81 110 aa6.38□□□□□ -1.39
VPS35-211ENST00000569950 FAM104BQ5XKR9 115 aa6.38□□□□□ -1.39
VPS35-211ENST00000569950 TMEM136Q6ZRR5 245 aa6.38□□□□□ -1.39
VPS35-211ENST00000569950 NRACQ8N912 160 aa6.38□□□□□ -1.39
VPS35-211ENST00000569950 RPL39LQ96EH5 51 aaKnown RBP6.38□□□□□ -1.39
VPS35-211ENST00000569950 TRAV9-1A0A075B6T8 112 aa6.37□□□□□ -1.39
VPS35-211ENST00000569950 LCE6AA0A183 80 aa6.37□□□□□ -1.39
VPS35-211ENST00000569950 A0A1B0GW15 77 aa6.37□□□□□ -1.39
VPS35-211ENST00000569950 GAGE12JA6NER3 117 aa6.37□□□□□ -1.39
VPS35-211ENST00000569950 SMKR1H3BMG3 65 aa6.37□□□□□ -1.39
VPS35-211ENST00000569950 GAGE1Q13065 139 aa6.37□□□□□ -1.39
VPS35-211ENST00000569950 GAGE4Q13068 117 aa6.37□□□□□ -1.39
VPS35-211ENST00000569950 GAGE5Q13069 117 aa6.37□□□□□ -1.39
VPS35-211ENST00000569950 MRPL23Q16540 153 aaKnown RBP6.37□□□□□ -1.39
VPS35-211ENST00000569950 GAGE13Q4V321 117 aa6.37□□□□□ -1.39
VPS35-211ENST00000569950 LGALS9CQ6DKI2 356 aa6.37□□□□□ -1.39
VPS35-211ENST00000569950 LYPD5Q6UWN5 251 aa6.37□□□□□ -1.39
VPS35-211ENST00000569950 CBLN2Q8IUK8 224 aa6.37□□□□□ -1.39
VPS35-211ENST00000569950 BTF3L4Q96K17 158 aa6.37□□□□□ -1.39
VPS35-211ENST00000569950 ICOSQ9Y6W8 199 aa6.37□□□□□ -1.39
VPS35-211ENST00000569950 URGCP-MRPS24S4R325 110 aa6.37□□□□□ -1.39
VPS35-211ENST00000569950 DNAH17Q9UFH2 4485 aa6.37□□□□□ -1.39
VPS35-211ENST00000569950 TGIF2-C20orf24A0A0A6YYL0 155 aa6.36□□□□□ -1.39
VPS35-211ENST00000569950 F5H697 171 aa6.36□□□□□ -1.39
VPS35-211ENST00000569950 NCR2O95944 276 aa6.36□□□□□ -1.39
VPS35-211ENST00000569950 TIRAPP58753 221 aa6.36□□□□□ -1.39
VPS35-211ENST00000569950 RASL11AQ6T310 242 aa6.36□□□□□ -1.39
VPS35-211ENST00000569950 NTM-AS1Q6ZSK4 140 aa6.36□□□□□ -1.39
VPS35-211ENST00000569950 ZNRF2Q8NHG8 242 aa6.36□□□□□ -1.39
VPS35-211ENST00000569950 PRADC1Q9BSG0 188 aa6.36□□□□□ -1.39
VPS35-211ENST00000569950 TRBV7-3A0A075B6L6 115 aa6.35□□□□□ -1.39
VPS35-211ENST00000569950 TRBV24-1A0A075B6N3 115 aa6.35□□□□□ -1.39
VPS35-211ENST00000569950 TRBV6-5A0A0K0K1A5 114 aa6.35□□□□□ -1.39
VPS35-211ENST00000569950 SMIM17P0DL12 118 aa6.35□□□□□ -1.39
VPS35-211ENST00000569950 SRIP30626 198 aa6.35□□□□□ -1.39
VPS35-211ENST00000569950 NEGR1Q7Z3B1 354 aa6.35□□□□□ -1.39
VPS35-211ENST00000569950 FRZBQ92765 325 aa6.35□□□□□ -1.39
VPS35-211ENST00000569950 BORCS7Q96B45 105 aa6.35□□□□□ -1.39
VPS35-211ENST00000569950 UPK3BQ9BT76 320 aa6.35□□□□□ -1.39
VPS35-211ENST00000569950 KRTAP1-5Q9BYS1 174 aa6.35□□□□□ -1.39
VPS35-211ENST00000569950 NIT2Q9NQR4 276 aa6.35□□□□□ -1.39
VPS35-211ENST00000569950 MRPS16Q9Y3D3 137 aaKnown RBP6.35□□□□□ -1.39
VPS35-211ENST00000569950 FAT2Q9NYQ8 4349 aa6.35□□□□□ -1.39
VPS35-211ENST00000569950 ATP6V1G1O75348 118 aa6.34□□□□□ -1.39
VPS35-211ENST00000569950 SCO1O75880 301 aa6.34□□□□□ -1.39
VPS35-211ENST00000569950 POLR2KP53803 58 aaKnown RBP6.34□□□□□ -1.39
VPS35-211ENST00000569950 Q8N3U1 123 aa6.34□□□□□ -1.39
VPS35-211ENST00000569950 ATP6V0E2Q8NHE4 81 aa6.34□□□□□ -1.39
VPS35-211ENST00000569950 MRAP2Q96G30 205 aa6.34□□□□□ -1.39
VPS35-211ENST00000569950 DNAJC30Q96LL9 226 aa6.34□□□□□ -1.39
VPS35-211ENST00000569950 IGHV3-38A0A0C4DH36 116 aa6.33□□□□□ -1.4
VPS35-211ENST00000569950 D6R8Y8 96 aa6.33□□□□□ -1.4
VPS35-211ENST00000569950 NPYP01303 97 aa6.33□□□□□ -1.4
VPS35-211ENST00000569950 RPL36AP83881 106 aaKnown RBP6.33□□□□□ -1.4
VPS35-211ENST00000569950 KCNIP4Q6PIL6 250 aa6.33□□□□□ -1.4
VPS35-211ENST00000569950 WFDC10BQ8IUB3 73 aa6.33□□□□□ -1.4
VPS35-211ENST00000569950 RPL36ALQ969Q0 106 aaKnown RBP6.33□□□□□ -1.4
VPS35-211ENST00000569950 TMEM70Q9BUB7 260 aa6.33□□□□□ -1.4
VPS35-211ENST00000569950 GNB1LQ9BYB4 327 aa6.33□□□□□ -1.4
VPS35-211ENST00000569950 GTSF1LQ9H1H1 148 aa6.33□□□□□ -1.4
VPS35-211ENST00000569950 IGLV2-18A0A075B6J9 118 aa6.32□□□□□ -1.4
VPS35-211ENST00000569950 SDHAF1A6NFY7 115 aa6.32□□□□□ -1.4
VPS35-211ENST00000569950 H7C1H1 209 aa6.32□□□□□ -1.4
VPS35-211ENST00000569950 PHOX2AO14813 284 aa6.32□□□□□ -1.4
VPS35-211ENST00000569950 S100A8P05109 93 aa6.32□□□□□ -1.4
VPS35-211ENST00000569950 Q6ZR54 194 aa6.32□□□□□ -1.4
VPS35-211ENST00000569950 SMIM15Q7Z3B0 74 aa6.32□□□□□ -1.4
VPS35-211ENST00000569950 SH2D6Q7Z4S9 175 aa6.32□□□□□ -1.4
VPS35-211ENST00000569950 DEFB104AQ8WTQ1 72 aa6.32□□□□□ -1.4
VPS35-211ENST00000569950 TRBV27A0A0K0K1C4 114 aa6.31□□□□□ -1.4
VPS35-211ENST00000569950 COLCA2A8K830 154 aa6.31□□□□□ -1.4
VPS35-211ENST00000569950 PRSS47A8MTI9 375 aa6.31□□□□□ -1.4
VPS35-211ENST00000569950 TNFRSF6BO95407 300 aa6.31□□□□□ -1.4
VPS35-211ENST00000569950 TSHBP01222 138 aa6.31□□□□□ -1.4
VPS35-211ENST00000569950 S100PP25815 95 aa6.31□□□□□ -1.4
VPS35-211ENST00000569950 RPL32P62910 135 aaKnown RBP6.31□□□□□ -1.4
VPS35-211ENST00000569950 OR10J3Q5JRS4 329 aa6.31□□□□□ -1.4
VPS35-211ENST00000569950 LELP1Q5T871 98 aa6.31□□□□□ -1.4
VPS35-211ENST00000569950 SMCO4Q9NRQ5 59 aa6.31□□□□□ -1.4
VPS35-211ENST00000569950 DNAH11Q96DT5 4516 aa6.31□□□□□ -1.4
VPS35-211ENST00000569950 TRBV6-8A0A0A6YYG3 113 aa6.3□□□□□ -1.4
VPS35-211ENST00000569950 LY6G6CO95867 125 aa6.3□□□□□ -1.4
VPS35-211ENST00000569950 HLA-DQA1P01909 254 aa6.3□□□□□ -1.4
VPS35-211ENST00000569950 DNAH10OSP0CZ25 163 aa6.3□□□□□ -1.4
VPS35-211ENST00000569950 CCL18P55774 89 aa6.3□□□□□ -1.4
VPS35-211ENST00000569950 IQCJQ1A5X6 159 aa6.3□□□□□ -1.4
VPS35-211ENST00000569950 KIAA1644Q3SXP7 199 aa6.3□□□□□ -1.4
VPS35-211ENST00000569950 DAZ4Q86SG3 579 aaKnown RBP6.3□□□□□ -1.4
VPS35-211ENST00000569950 DAZ3Q9NR90 486 aaKnown RBP6.3□□□□□ -1.4
VPS35-211ENST00000569950 TNFRSF18Q9Y5U5 241 aa6.3□□□□□ -1.4
VPS35-211ENST00000569950 PPBPP02775 128 aa6.29□□□□□ -1.4
VPS35-211ENST00000569950 ESDP10768 282 aa6.29□□□□□ -1.4
VPS35-211ENST00000569950 CKS2P33552 79 aa6.29□□□□□ -1.4
VPS35-211ENST00000569950 SUMO2P61956 95 aaKnown RBP6.29□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 82.9 ms